Wall clock time and date at job start Sun Mar 29 2020 21:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 115.56151 * 2 1 4 4 C 1.53006 * 117.49682 * 214.31167 * 2 1 3 5 5 C 1.52999 * 117.49984 * 145.68893 * 2 1 3 6 6 H 1.09002 * 117.49803 * 214.97824 * 5 2 1 7 7 C 1.53005 * 117.51737 * 0.02562 * 5 2 1 8 8 N 1.46896 * 109.46910 * 184.88136 * 7 5 2 9 9 C 1.46899 * 110.99820 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.47123 * 325.00397 * 9 8 7 11 11 C 1.50705 * 109.47266 * 205.00223 * 9 8 7 12 12 H 1.07994 * 119.99825 * 359.97438 * 11 9 8 13 13 C 1.37876 * 119.99867 * 180.02562 * 11 9 8 14 14 N 1.31513 * 120.00242 * 359.97438 * 13 11 9 15 15 Si 1.86808 * 119.99722 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47111 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47020 * 119.99693 * 15 13 11 18 18 H 1.48498 * 109.46789 * 239.99425 * 15 13 11 19 19 C 1.53002 * 109.47087 * 85.00535 * 9 8 7 20 20 F 1.39901 * 109.47135 * 59.99660 * 19 9 8 21 21 F 1.39894 * 109.47263 * 179.97438 * 19 9 8 22 22 F 1.39899 * 109.46754 * 299.99869 * 19 9 8 23 23 H 1.09000 * 109.47146 * 274.30840 * 1 2 3 24 24 H 1.08999 * 109.47670 * 34.31422 * 1 2 3 25 25 H 1.09001 * 109.47304 * 154.31393 * 1 2 3 26 26 H 1.09004 * 117.49624 * 145.02427 * 4 2 1 27 27 H 1.08995 * 117.52013 * 359.97438 * 4 2 1 28 28 H 1.08995 * 109.46863 * 304.88457 * 7 5 2 29 29 H 1.09005 * 109.46844 * 64.88440 * 7 5 2 30 30 H 1.00903 * 110.99862 * 56.05175 * 8 7 5 31 31 H 0.96996 * 120.00132 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2365 -1.1210 0.7650 6 1 3.1716 -0.8751 1.2683 7 6 1.3592 -2.1568 1.4711 8 7 2.2091 -3.0751 2.2406 9 6 1.3991 -4.0855 2.9342 10 1 0.4579 -3.6391 3.2548 11 6 2.1508 -4.5919 4.1383 12 1 3.1321 -4.2025 4.3653 13 6 1.5859 -5.5532 4.9495 14 7 0.3910 -6.0278 4.6727 15 14 2.5173 -6.1803 6.4424 16 1 3.8297 -5.4912 6.5325 17 1 1.7280 -5.9052 7.6698 18 1 2.7349 -7.6434 6.3113 19 6 1.1138 -5.2504 1.9842 20 9 2.3219 -5.8233 1.5727 21 9 0.3429 -6.2129 2.6449 22 9 0.4160 -4.7803 0.8665 23 1 -0.3633 0.0772 1.0248 24 1 -0.3634 0.8488 -0.5793 25 1 -0.3634 -0.9261 -0.4454 26 1 3.1716 -0.8752 -1.2683 27 1 1.6115 -1.8589 -1.2681 28 1 0.6691 -1.6494 2.1451 29 1 0.7939 -2.7206 0.7290 30 1 2.7910 -2.5695 2.8917 31 1 -0.0065 -6.7037 5.2436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896699207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:11 Heat of formation + Delta-G solvation = -137.826360 kcal Electronic energy + Delta-G solvation = -17878.225196 eV Core-core repulsion = 14552.074893 eV Total energy + Delta-G solvation = -3326.150303 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.34700 -47.99058 -47.64926 -39.28353 -36.90827 -34.44922 -30.54091 -29.15388 -26.56595 -26.02814 -22.71068 -22.38934 -20.51027 -19.14374 -18.74775 -18.59207 -17.33138 -16.86314 -16.63767 -15.85971 -15.18892 -14.97996 -14.80930 -14.63513 -14.41346 -14.23715 -14.17881 -13.92900 -13.75202 -13.41441 -13.03794 -12.85280 -12.67519 -12.55512 -12.32060 -12.16171 -11.76442 -11.33662 -10.81963 -10.64229 -10.63491 -9.30692 -8.18938 -6.45954 1.42712 1.45412 1.57635 2.35736 2.55564 2.84690 2.96369 3.28800 3.79565 3.86377 3.95514 4.00393 4.12278 4.43982 4.47547 4.53042 4.69140 4.74057 4.93680 4.96737 4.97473 5.02025 5.19620 5.36243 5.48172 5.56276 5.69977 6.12127 6.54674 6.73062 7.24562 8.74075 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.033864 B = 0.007793 C = 0.007143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.631048 B = 3592.006203 C = 3919.172874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.140 4.140 3 H 0.122 0.878 4 C -0.172 4.172 5 C -0.156 4.156 6 H 0.110 0.890 7 C 0.084 3.916 8 N -0.680 5.680 9 C 0.191 3.809 10 H 0.018 0.982 11 C -0.554 4.554 12 H 0.079 0.921 13 C 0.013 3.987 14 N -0.876 5.876 15 Si 0.976 3.024 16 H -0.261 1.261 17 H -0.274 1.274 18 H -0.283 1.283 19 C 0.435 3.565 20 F -0.204 7.204 21 F -0.156 7.156 22 F -0.221 7.221 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.026 0.974 29 H 0.062 0.938 30 H 0.354 0.646 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 8.921 -5.675 10.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.159 4.159 3 H 0.140 0.860 4 C -0.209 4.209 5 C -0.174 4.174 6 H 0.128 0.872 7 C -0.045 4.045 8 N -0.312 5.312 9 C 0.079 3.921 10 H 0.035 0.965 11 C -0.591 4.591 12 H 0.098 0.902 13 C -0.192 4.192 14 N -0.511 5.511 15 Si 0.800 3.200 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.209 1.209 19 C 0.380 3.620 20 F -0.185 7.185 21 F -0.137 7.137 22 F -0.203 7.203 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.124 0.876 27 H 0.101 0.899 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.174 0.826 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.389 8.365 -6.170 10.487 hybrid contribution -0.293 -0.459 1.137 1.260 sum 1.097 7.905 -5.034 9.436 Atomic orbital electron populations 1.21378 0.92898 1.02144 1.01858 1.22493 0.95546 0.94510 1.03319 0.85961 1.23168 1.02898 1.01368 0.93507 1.22261 1.01140 0.99334 0.94688 0.87181 1.21682 0.94119 0.92285 0.96393 1.60173 1.23586 1.16791 1.30677 1.19866 0.95010 0.87591 0.89587 0.96477 1.21256 1.04252 1.25194 1.08358 0.90243 1.25962 0.96162 0.95870 1.01190 1.70516 1.16013 1.27897 1.36685 0.85227 0.78879 0.77838 0.78084 1.18470 1.19951 1.20859 1.22710 0.72977 0.87305 0.79052 1.92977 1.47378 1.86808 1.91373 1.93366 1.75700 1.66344 1.78290 1.92956 1.80699 1.88665 1.58027 0.92656 0.90342 0.93557 0.87564 0.89896 0.95602 0.91926 0.82597 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.20 71.98 0.66 -2.12 16 2 C -0.14 -3.18 6.41 -10.79 -0.07 -3.25 16 3 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.17 -4.33 9.82 30.60 0.30 -4.03 16 5 C -0.16 -4.42 5.95 -10.79 -0.06 -4.48 16 6 H 0.11 2.97 8.13 -2.39 -0.02 2.95 16 7 C 0.08 3.02 4.75 86.31 0.41 3.43 16 8 N -0.68 -28.48 6.22 -495.44 -3.08 -31.56 16 9 C 0.19 9.57 2.26 44.17 0.10 9.67 16 10 H 0.02 0.95 7.80 -2.39 -0.02 0.93 16 11 C -0.55 -29.20 8.33 25.60 0.21 -28.98 16 12 H 0.08 4.04 7.62 -2.91 -0.02 4.02 16 13 C 0.01 0.67 5.20 84.65 0.44 1.11 16 14 N -0.88 -49.12 9.50 21.45 0.20 -48.91 16 15 Si 0.98 42.04 29.54 68.60 2.03 44.06 16 16 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 19 C 0.44 22.71 2.81 71.98 0.20 22.91 16 20 F -0.20 -10.74 16.94 44.97 0.76 -9.98 16 21 F -0.16 -8.82 12.91 44.97 0.58 -8.24 16 22 F -0.22 -10.70 15.04 44.97 0.68 -10.03 16 23 H 0.05 1.27 7.84 -2.39 -0.02 1.26 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.13 7.90 -2.39 -0.02 1.11 16 26 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.08 2.26 7.94 -2.39 -0.02 2.24 16 28 H 0.03 0.93 7.69 -2.39 -0.02 0.92 16 29 H 0.06 2.44 5.76 -2.38 -0.01 2.43 16 30 H 0.35 13.79 8.21 -89.69 -0.74 13.05 16 31 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -58.32 267.81 3.77 -54.56 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.41 Total: 15.84 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 2.19 Total: -5.74 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -2.88 Total: -80.48 kcal Atomic # 9 Polarization: -30.27 SS G_CDS: 2.02 Total: -28.25 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -58.32 3.77 -54.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896699207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.268 kcal (2) G-P(sol) polarization free energy of solvation -58.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds