Wall clock time and date at job start Sun Mar 29 2020 21:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 115.56219 * 2 1 4 4 C 1.53003 * 117.49877 * 214.32023 * 2 1 3 5 5 C 1.53002 * 60.03150 * 252.51724 * 4 2 1 6 6 H 1.08998 * 117.50362 * 107.49529 * 5 4 2 7 7 C 1.53002 * 117.49888 * 252.50091 * 5 4 2 8 8 N 1.46895 * 109.46938 * 243.60229 * 7 5 4 9 9 C 1.46904 * 110.99915 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.47030 * 35.00346 * 9 8 7 11 11 C 1.50705 * 109.47036 * 155.00305 * 9 8 7 12 12 H 1.07997 * 120.00013 * 115.89950 * 11 9 8 13 13 C 1.37881 * 119.99766 * 295.89619 * 11 9 8 14 14 N 1.31510 * 119.99865 * 175.53554 * 13 11 9 15 15 Si 1.86801 * 120.00221 * 355.53049 * 13 11 9 16 16 H 1.48502 * 109.46714 * 85.01671 * 15 13 11 17 17 H 1.48499 * 109.47205 * 205.01482 * 15 13 11 18 18 H 1.48497 * 109.47248 * 325.02014 * 15 13 11 19 19 C 1.53000 * 109.47265 * 275.00187 * 9 8 7 20 20 F 1.39898 * 109.47092 * 65.23024 * 19 9 8 21 21 F 1.39905 * 109.46911 * 185.22641 * 19 9 8 22 22 F 1.39890 * 109.47164 * 305.22898 * 19 9 8 23 23 H 1.09008 * 109.47299 * 154.29747 * 1 2 3 24 24 H 1.09003 * 109.46889 * 274.28920 * 1 2 3 25 25 H 1.08995 * 109.47410 * 34.29575 * 1 2 3 26 26 H 1.08995 * 117.49941 * 145.02121 * 4 2 1 27 27 H 1.09000 * 117.49997 * 0.02562 * 4 2 1 28 28 H 1.09002 * 109.46993 * 3.60754 * 7 5 4 29 29 H 1.09001 * 109.47360 * 123.60519 * 7 5 4 30 30 H 1.00901 * 111.00305 * 56.04755 * 8 7 5 31 31 H 0.97000 * 120.00392 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1209 -0.7652 5 6 2.2367 -1.1219 0.7648 6 1 1.6117 -1.8597 1.2678 7 6 3.5495 -0.7776 1.4712 8 7 4.0099 -1.9399 2.2426 9 6 5.2713 -1.6457 2.9356 10 1 5.2761 -0.6034 3.2546 11 6 5.4028 -2.5406 4.1410 12 1 6.2023 -3.2649 4.1912 13 6 4.5024 -2.4345 5.1798 14 7 4.5634 -3.2731 6.1911 15 14 3.1960 -1.0996 5.1509 16 1 2.0234 -1.5715 4.3714 17 1 2.7743 -0.7896 6.5406 18 1 3.7517 0.1232 4.5177 19 6 6.4449 -1.8938 1.9858 20 9 6.3884 -0.9817 0.9265 21 9 7.6488 -1.7291 2.6792 22 9 6.3707 -3.1972 1.4834 23 1 -0.3634 -0.9260 -0.4457 24 1 -0.3633 0.0769 1.0248 25 1 -0.3634 0.8489 -0.5790 26 1 3.1715 -0.8750 -1.2684 27 1 1.6112 -1.8581 -1.2690 28 1 4.3027 -0.5124 0.7293 29 1 3.3900 0.0649 2.1442 30 1 4.1034 -2.7523 1.6515 31 1 3.9302 -3.1983 6.9221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896699208.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:14 Heat of formation + Delta-G solvation = -140.052768 kcal Electronic energy + Delta-G solvation = -17736.411663 eV Core-core repulsion = 14410.164816 eV Total energy + Delta-G solvation = -3326.246847 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.27741 -46.84121 -46.67266 -38.09950 -35.52438 -32.38429 -29.75376 -27.93193 -24.87723 -24.42023 -21.04589 -20.85496 -20.06357 -18.13146 -17.61419 -17.05449 -16.37584 -15.33566 -14.68217 -14.19442 -13.88107 -13.69802 -13.39905 -13.31912 -13.20896 -12.99973 -12.91303 -12.84374 -12.61525 -12.51829 -11.95818 -11.50717 -11.32919 -11.05590 -10.73638 -10.55042 -10.06547 -9.88614 -9.58664 -9.40406 -8.69671 -7.75866 -6.19293 -4.31388 3.37206 3.42822 3.51606 3.69637 3.86108 4.42779 4.44930 4.85783 4.90389 4.98815 5.04740 5.09645 5.23143 5.33600 5.47510 5.67703 5.77023 5.80848 5.90504 6.00800 6.01198 6.13609 6.30122 6.31736 6.55971 7.16129 7.73646 7.94667 8.25411 8.77914 9.39481 10.89973 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.019376 B = 0.011221 C = 0.007827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.720696 B = 2494.619785 C = 3576.528009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.157 4.157 3 H 0.101 0.899 4 C -0.179 4.179 5 C -0.140 4.140 6 H 0.112 0.888 7 C 0.065 3.935 8 N -0.667 5.667 9 C 0.155 3.845 10 H 0.077 0.923 11 C -0.523 4.523 12 H 0.083 0.917 13 C 0.099 3.901 14 N -0.883 5.883 15 Si 0.912 3.088 16 H -0.264 1.264 17 H -0.304 1.304 18 H -0.276 1.276 19 C 0.421 3.579 20 F -0.208 7.208 21 F -0.184 7.184 22 F -0.188 7.188 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.342 0.658 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 5.850 -11.001 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.176 4.176 3 H 0.119 0.881 4 C -0.216 4.216 5 C -0.159 4.159 6 H 0.130 0.870 7 C -0.064 4.064 8 N -0.299 5.299 9 C 0.046 3.954 10 H 0.095 0.905 11 C -0.561 4.561 12 H 0.101 0.899 13 C -0.108 4.108 14 N -0.519 5.519 15 Si 0.741 3.259 16 H -0.189 1.189 17 H -0.232 1.232 18 H -0.202 1.202 19 C 0.365 3.635 20 F -0.190 7.190 21 F -0.166 7.166 22 F -0.170 7.170 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.770 5.916 -10.313 12.811 hybrid contribution 0.190 0.530 -0.909 1.069 sum -4.580 6.446 -11.222 13.728 Atomic orbital electron populations 1.21337 0.93052 1.01531 1.01802 1.22359 0.95066 0.94675 1.05485 0.88116 1.23205 1.02343 1.01311 0.94765 1.22487 0.99058 1.01481 0.92834 0.86960 1.21864 0.93665 0.95040 0.95858 1.61233 1.30763 1.05462 1.32468 1.21082 0.80786 1.01706 0.91829 0.90517 1.20489 1.15688 1.21552 0.98409 0.89863 1.24798 0.96316 0.95511 0.94143 1.69911 1.36685 1.35812 1.09452 0.86317 0.82781 0.81465 0.75370 1.18875 1.23170 1.20164 1.22487 0.87338 0.73127 0.80556 1.93056 1.96597 1.68102 1.61248 1.93110 1.49224 1.95155 1.79104 1.93075 1.96421 1.38879 1.88631 0.92669 0.92207 0.92507 0.89107 0.89071 0.94404 0.91137 0.83708 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.19 37.16 0.38 -0.93 16 2 C -0.16 -2.00 6.13 -90.58 -0.56 -2.55 16 3 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 4 C -0.18 -2.28 9.82 -26.73 -0.26 -2.54 16 5 C -0.14 -2.12 5.67 -90.58 -0.51 -2.64 16 6 H 0.11 1.82 8.14 -51.93 -0.42 1.39 16 7 C 0.06 1.14 5.50 -3.83 -0.02 1.12 16 8 N -0.67 -13.76 4.50 -107.95 -0.49 -14.24 16 9 C 0.16 3.53 1.46 -68.86 -0.10 3.43 16 10 H 0.08 1.75 6.49 -51.93 -0.34 1.41 16 11 C -0.52 -14.20 8.78 -34.44 -0.30 -14.50 16 12 H 0.08 2.48 7.93 -52.49 -0.42 2.06 16 13 C 0.10 2.75 5.47 -17.82 -0.10 2.66 16 14 N -0.88 -26.11 13.96 55.43 0.77 -25.34 16 15 Si 0.91 21.96 25.86 -169.99 -4.40 17.56 16 16 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 18 H -0.28 -6.36 6.53 56.52 0.37 -5.99 16 19 C 0.42 8.93 2.76 37.16 0.10 9.03 16 20 F -0.21 -4.00 15.24 2.25 0.03 -3.96 16 21 F -0.18 -4.07 16.84 2.25 0.04 -4.03 16 22 F -0.19 -4.01 16.22 2.25 0.04 -3.97 16 23 H 0.05 0.57 7.90 -51.92 -0.41 0.16 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.09 1.14 8.03 -51.93 -0.42 0.72 16 27 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 28 H 0.04 0.64 5.91 -51.93 -0.31 0.34 16 29 H 0.07 1.29 7.74 -51.93 -0.40 0.89 16 30 H 0.34 6.81 7.70 -39.29 -0.30 6.50 16 31 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 269.76 15.07 4.07 4.07 Total: -1.00 -28.16 269.76 -5.17 -33.34 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.87 Total: 3.53 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.37 Total: -6.93 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.29 Total: -39.58 kcal Atomic # 9 Polarization: -12.08 SS G_CDS: 0.11 Total: -11.97 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.40 Total: 17.56 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.16 -5.17 -33.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896699208.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.717 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds