Wall clock time and date at job start Sun Mar 29 2020 21:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 115.56219 * 2 1 4 4 C 1.53003 * 117.49877 * 214.32023 * 2 1 3 5 5 C 1.53002 * 60.03150 * 252.51724 * 4 2 1 6 6 H 1.08998 * 117.50362 * 107.49529 * 5 4 2 7 7 C 1.53002 * 117.49888 * 252.50091 * 5 4 2 8 8 N 1.46895 * 109.46938 * 243.60229 * 7 5 4 9 9 C 1.46904 * 110.99915 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.47030 * 35.00346 * 9 8 7 11 11 C 1.50705 * 109.47036 * 155.00305 * 9 8 7 12 12 H 1.07997 * 120.00013 * 115.89950 * 11 9 8 13 13 C 1.37881 * 119.99766 * 295.89619 * 11 9 8 14 14 N 1.31510 * 119.99865 * 175.53554 * 13 11 9 15 15 Si 1.86801 * 120.00221 * 355.53049 * 13 11 9 16 16 H 1.48502 * 109.46714 * 85.01671 * 15 13 11 17 17 H 1.48499 * 109.47205 * 205.01482 * 15 13 11 18 18 H 1.48497 * 109.47248 * 325.02014 * 15 13 11 19 19 C 1.53000 * 109.47265 * 275.00187 * 9 8 7 20 20 F 1.39898 * 109.47092 * 65.23024 * 19 9 8 21 21 F 1.39905 * 109.46911 * 185.22641 * 19 9 8 22 22 F 1.39890 * 109.47164 * 305.22898 * 19 9 8 23 23 H 1.09008 * 109.47299 * 154.29747 * 1 2 3 24 24 H 1.09003 * 109.46889 * 274.28920 * 1 2 3 25 25 H 1.08995 * 109.47410 * 34.29575 * 1 2 3 26 26 H 1.08995 * 117.49941 * 145.02121 * 4 2 1 27 27 H 1.09000 * 117.49997 * 0.02562 * 4 2 1 28 28 H 1.09002 * 109.46993 * 3.60754 * 7 5 4 29 29 H 1.09001 * 109.47360 * 123.60519 * 7 5 4 30 30 H 1.00901 * 111.00305 * 56.04755 * 8 7 5 31 31 H 0.97000 * 120.00392 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1209 -0.7652 5 6 2.2367 -1.1219 0.7648 6 1 1.6117 -1.8597 1.2678 7 6 3.5495 -0.7776 1.4712 8 7 4.0099 -1.9399 2.2426 9 6 5.2713 -1.6457 2.9356 10 1 5.2761 -0.6034 3.2546 11 6 5.4028 -2.5406 4.1410 12 1 6.2023 -3.2649 4.1912 13 6 4.5024 -2.4345 5.1798 14 7 4.5634 -3.2731 6.1911 15 14 3.1960 -1.0996 5.1509 16 1 2.0234 -1.5715 4.3714 17 1 2.7743 -0.7896 6.5406 18 1 3.7517 0.1232 4.5177 19 6 6.4449 -1.8938 1.9858 20 9 6.3884 -0.9817 0.9265 21 9 7.6488 -1.7291 2.6792 22 9 6.3707 -3.1972 1.4834 23 1 -0.3634 -0.9260 -0.4457 24 1 -0.3633 0.0769 1.0248 25 1 -0.3634 0.8489 -0.5790 26 1 3.1715 -0.8750 -1.2684 27 1 1.6112 -1.8581 -1.2690 28 1 4.3027 -0.5124 0.7293 29 1 3.3900 0.0649 2.1442 30 1 4.1034 -2.7523 1.6515 31 1 3.9302 -3.1983 6.9221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896699208.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:13 Heat of formation + Delta-G solvation = -157.274676 kcal Electronic energy + Delta-G solvation = -17737.158461 eV Core-core repulsion = 14410.164816 eV Total energy + Delta-G solvation = -3326.993645 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.99204 -48.51639 -48.43020 -39.27201 -37.14305 -34.40892 -31.28374 -29.10033 -26.83752 -25.82911 -22.81953 -21.94679 -21.22199 -19.92172 -19.34416 -18.78356 -18.33123 -16.76737 -16.26791 -15.67684 -15.52635 -15.32041 -14.92711 -14.91002 -14.76266 -14.68071 -14.55834 -14.47722 -14.00201 -13.88083 -13.39309 -12.92547 -12.72603 -12.50876 -12.24512 -12.16933 -11.86315 -11.61862 -10.86716 -10.81326 -10.62032 -9.39450 -8.33429 -6.49880 1.43359 1.51875 1.58785 1.95051 2.42262 2.69868 2.90496 3.09099 3.26163 3.34345 3.55181 3.86374 3.98809 4.08293 4.39298 4.43496 4.51267 4.61734 4.81559 4.91492 4.96260 4.97618 5.18904 5.20680 5.31966 5.47007 5.99852 6.04885 6.42044 6.60702 7.24549 8.79684 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.019376 B = 0.011221 C = 0.007827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.720696 B = 2494.619785 C = 3576.528009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.145 4.145 3 H 0.107 0.893 4 C -0.167 4.167 5 C -0.164 4.164 6 H 0.100 0.900 7 C 0.069 3.931 8 N -0.675 5.675 9 C 0.161 3.839 10 H 0.083 0.917 11 C -0.528 4.528 12 H 0.043 0.957 13 C 0.049 3.951 14 N -0.931 5.931 15 Si 0.971 3.029 16 H -0.258 1.258 17 H -0.306 1.306 18 H -0.257 1.257 19 C 0.427 3.573 20 F -0.191 7.191 21 F -0.191 7.191 22 F -0.189 7.189 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.346 0.654 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.613 7.502 -12.830 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.164 4.164 3 H 0.126 0.874 4 C -0.204 4.204 5 C -0.183 4.183 6 H 0.118 0.882 7 C -0.060 4.060 8 N -0.307 5.307 9 C 0.051 3.949 10 H 0.101 0.899 11 C -0.566 4.566 12 H 0.061 0.939 13 C -0.153 4.153 14 N -0.569 5.569 15 Si 0.797 3.203 16 H -0.183 1.183 17 H -0.234 1.234 18 H -0.181 1.181 19 C 0.371 3.629 20 F -0.173 7.173 21 F -0.173 7.173 22 F -0.171 7.171 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.167 0.833 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.059 7.574 -12.170 15.563 hybrid contribution 0.646 -0.022 -0.400 0.760 sum -5.414 7.552 -12.570 15.631 Atomic orbital electron populations 1.21371 0.91725 1.02687 1.01961 1.22500 0.96116 0.94401 1.03391 0.87441 1.23272 1.02755 1.01473 0.92857 1.22325 0.98279 1.03375 0.94284 0.88222 1.21878 0.95075 0.93347 0.95696 1.60944 1.29157 1.06970 1.33649 1.20814 0.82390 1.00657 0.91080 0.89940 1.20597 1.14395 1.21121 1.00529 0.93893 1.25599 0.98479 0.97516 0.93685 1.70027 1.38228 1.38043 1.10588 0.85380 0.80199 0.79425 0.75323 1.18298 1.23423 1.18138 1.22201 0.86598 0.73355 0.80761 1.93084 1.96497 1.67421 1.60290 1.93100 1.49575 1.95193 1.79408 1.93075 1.96386 1.39074 1.88579 0.92160 0.92665 0.90667 0.88712 0.87770 0.93562 0.91646 0.83305 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 10.19 71.98 0.73 -1.50 16 2 C -0.15 -3.21 6.13 -10.77 -0.07 -3.27 16 3 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.17 -3.70 9.82 30.60 0.30 -3.40 16 5 C -0.16 -4.56 5.67 -10.77 -0.06 -4.62 16 6 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 7 C 0.07 2.24 5.50 86.30 0.47 2.71 16 8 N -0.67 -26.82 4.50 -495.44 -2.23 -29.05 16 9 C 0.16 7.16 1.46 44.17 0.06 7.22 16 10 H 0.08 3.61 6.49 -2.39 -0.02 3.59 16 11 C -0.53 -29.04 8.78 25.60 0.22 -28.82 16 12 H 0.04 2.65 7.93 -2.91 -0.02 2.63 16 13 C 0.05 2.75 5.47 84.66 0.46 3.22 16 14 N -0.93 -56.34 13.96 21.45 0.30 -56.04 16 15 Si 0.97 44.79 25.86 68.60 1.77 46.57 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 17 H -0.31 -14.17 7.11 99.48 0.71 -13.47 16 18 H -0.26 -10.93 6.53 99.48 0.65 -10.28 16 19 C 0.43 17.64 2.76 71.98 0.20 17.84 16 20 F -0.19 -6.90 15.24 44.97 0.69 -6.21 16 21 F -0.19 -8.35 16.84 44.97 0.76 -7.60 16 22 F -0.19 -7.94 16.22 44.97 0.73 -7.21 16 23 H 0.06 1.05 7.90 -2.38 -0.02 1.03 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.09 2.05 8.03 -2.39 -0.02 2.03 16 27 H 0.10 2.05 8.05 -2.39 -0.02 2.03 16 28 H 0.05 1.43 5.91 -2.39 -0.01 1.42 16 29 H 0.07 2.20 7.74 -2.39 -0.02 2.18 16 30 H 0.35 13.34 7.70 -89.69 -0.69 12.65 16 31 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -60.04 269.76 4.74 -55.30 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.40 Total: 14.85 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 2.33 Total: -10.61 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -1.93 Total: -85.09 kcal Atomic # 9 Polarization: -23.19 SS G_CDS: 2.17 Total: -21.01 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.77 Total: 46.57 kcal Total: -60.04 4.74 -55.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896699208.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.979 kcal (2) G-P(sol) polarization free energy of solvation -60.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds