Wall clock time and date at job start Sun Mar 29 2020 21:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 115.56240 * 2 1 4 4 C 1.52994 * 117.49650 * 214.30698 * 2 1 3 5 5 C 1.52999 * 60.00263 * 252.51025 * 4 2 1 6 6 H 1.09001 * 117.49604 * 107.50832 * 5 4 2 7 7 C 1.52994 * 117.50033 * 252.51496 * 5 4 2 8 8 N 1.46906 * 109.46817 * 243.60688 * 7 5 4 9 9 C 1.46903 * 110.99973 * 179.97438 * 8 7 5 10 10 H 1.09003 * 109.46808 * 325.00209 * 9 8 7 11 11 C 1.50694 * 109.47066 * 204.99831 * 9 8 7 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 9 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.53000 * 109.47120 * 84.99803 * 9 8 7 20 20 F 1.39903 * 109.47440 * 180.02562 * 19 9 8 21 21 F 1.39899 * 109.47255 * 299.99970 * 19 9 8 22 22 F 1.39900 * 109.47102 * 59.99836 * 19 9 8 23 23 H 1.09005 * 109.46733 * 274.31678 * 1 2 3 24 24 H 1.09002 * 109.47076 * 34.31144 * 1 2 3 25 25 H 1.08994 * 109.47538 * 154.31426 * 1 2 3 26 26 H 1.08998 * 117.49860 * 145.02414 * 4 2 1 27 27 H 1.08999 * 117.51987 * 359.97438 * 4 2 1 28 28 H 1.08993 * 109.47410 * 123.60762 * 7 5 4 29 29 H 1.08998 * 109.47442 * 3.60037 * 7 5 4 30 30 H 1.00894 * 111.00400 * 56.04110 * 8 7 5 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7649 5 6 2.2365 -1.1210 0.7651 6 1 1.6115 -1.8586 1.2684 7 6 3.5490 -0.7758 1.4715 8 7 4.0096 -1.9376 2.2437 9 6 5.2708 -1.6426 2.9367 10 1 5.8796 -0.9832 2.3181 11 6 6.0180 -2.9268 3.1884 12 1 5.5978 -3.8681 2.8662 13 6 7.2376 -2.9003 3.8310 14 7 7.7491 -1.7541 4.2238 15 14 8.1634 -4.4923 4.1436 16 1 9.4385 -4.1941 4.8440 17 1 7.3335 -5.3903 4.9862 18 1 8.4547 -5.1580 2.8485 19 6 4.9712 -0.9569 4.2713 20 9 6.1723 -0.6754 4.9310 21 9 4.2776 0.2353 4.0376 22 9 4.1897 -1.8032 5.0652 23 1 -0.3633 0.0774 1.0248 24 1 -0.3633 0.8489 -0.5793 25 1 -0.3634 -0.9260 -0.4454 26 1 3.1715 -0.8753 -1.2682 27 1 1.6115 -1.8589 -1.2679 28 1 3.3891 0.0670 2.1437 29 1 4.3023 -0.5111 0.7295 30 1 4.1033 -2.7502 1.6532 31 1 8.6070 -1.7355 4.6762 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896699209.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:16 Heat of formation + Delta-G solvation = -138.548621 kcal Electronic energy + Delta-G solvation = -17690.822072 eV Core-core repulsion = 14364.640450 eV Total energy + Delta-G solvation = -3326.181623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.34449 -47.98710 -47.64667 -39.19236 -36.93459 -34.48108 -30.83032 -28.94964 -26.53916 -25.84946 -22.75571 -21.91113 -21.16868 -19.24205 -18.77852 -18.60498 -17.33511 -16.80606 -16.47531 -15.48985 -15.37141 -14.97141 -14.79708 -14.72485 -14.40739 -14.23805 -14.07147 -13.93715 -13.82654 -13.49161 -13.01799 -12.81992 -12.65647 -12.58722 -12.23125 -12.17922 -11.85722 -11.37319 -10.81129 -10.67769 -10.56440 -9.35284 -8.18536 -6.45890 1.44364 1.47365 1.55124 2.36180 2.55822 2.83984 2.97016 3.22046 3.79645 3.88626 3.97612 4.04844 4.09736 4.36778 4.44960 4.54831 4.67579 4.79628 4.93850 4.96102 4.99467 5.03046 5.23261 5.34510 5.48934 5.56513 5.69974 6.11977 6.53906 6.72543 7.24573 8.74060 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.033346 B = 0.007415 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.476880 B = 3775.393642 C = 4267.775078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.149 4.149 3 H 0.100 0.900 4 C -0.168 4.168 5 C -0.156 4.156 6 H 0.107 0.893 7 C 0.082 3.918 8 N -0.679 5.679 9 C 0.192 3.808 10 H 0.018 0.982 11 C -0.556 4.556 12 H 0.079 0.921 13 C 0.013 3.987 14 N -0.876 5.876 15 Si 0.976 3.024 16 H -0.282 1.282 17 H -0.272 1.272 18 H -0.262 1.262 19 C 0.435 3.565 20 F -0.155 7.155 21 F -0.221 7.221 22 F -0.203 7.203 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.024 0.976 30 H 0.354 0.646 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 1.350 -7.167 11.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.167 4.167 3 H 0.118 0.882 4 C -0.204 4.204 5 C -0.175 4.175 6 H 0.125 0.875 7 C -0.047 4.047 8 N -0.311 5.311 9 C 0.080 3.920 10 H 0.035 0.965 11 C -0.593 4.593 12 H 0.097 0.903 13 C -0.191 4.191 14 N -0.511 5.511 15 Si 0.800 3.200 16 H -0.208 1.208 17 H -0.198 1.198 18 H -0.186 1.186 19 C 0.379 3.621 20 F -0.137 7.137 21 F -0.203 7.203 22 F -0.185 7.185 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.174 0.826 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.716 1.608 -6.508 10.996 hybrid contribution 1.280 -0.299 0.054 1.315 sum -7.437 1.309 -6.455 9.934 Atomic orbital electron populations 1.21355 0.91397 1.02711 1.02038 1.22473 0.96309 0.94248 1.03704 0.88193 1.23277 1.02641 1.01485 0.93032 1.22275 0.97934 1.03174 0.94074 0.87536 1.21723 0.94489 0.93541 0.94968 1.60166 1.30193 1.07040 1.33732 1.19854 0.87859 0.97007 0.87267 0.96489 1.21196 1.03818 0.92437 1.41823 0.90264 1.25963 0.98394 1.00480 0.94289 1.70506 1.17734 1.26320 1.36554 0.85326 0.77298 0.78568 0.78817 1.20778 1.19754 1.18623 1.22713 0.73326 0.75146 0.90901 1.93368 1.43341 1.93622 1.83345 1.92960 1.81299 1.51340 1.94716 1.92977 1.76286 1.71934 1.77322 0.92500 0.90906 0.91857 0.89107 0.87364 0.91796 0.95768 0.82558 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 10.19 71.98 0.73 -1.48 16 2 C -0.15 -3.47 6.13 -10.79 -0.07 -3.54 16 3 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 4 C -0.17 -3.86 9.82 30.59 0.30 -3.56 16 5 C -0.16 -4.46 5.67 -10.79 -0.06 -4.52 16 6 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 7 C 0.08 2.96 5.67 86.30 0.49 3.45 16 8 N -0.68 -28.51 6.22 -495.46 -3.08 -31.60 16 9 C 0.19 9.62 2.26 44.17 0.10 9.71 16 10 H 0.02 0.95 7.80 -2.39 -0.02 0.93 16 11 C -0.56 -29.34 8.33 25.60 0.21 -29.13 16 12 H 0.08 4.01 7.62 -2.91 -0.02 3.99 16 13 C 0.01 0.71 5.20 84.66 0.44 1.15 16 14 N -0.88 -49.18 9.50 21.45 0.20 -48.98 16 15 Si 0.98 42.00 29.54 68.60 2.03 44.02 16 16 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 18 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 19 C 0.43 22.70 2.81 71.98 0.20 22.90 16 20 F -0.16 -8.80 12.91 44.97 0.58 -8.22 16 21 F -0.22 -10.70 15.04 44.97 0.68 -10.02 16 22 F -0.20 -10.73 16.94 44.97 0.76 -9.96 16 23 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.08 7.90 -2.39 -0.02 1.06 16 26 H 0.09 2.10 8.03 -2.39 -0.02 2.08 16 27 H 0.11 2.12 8.05 -2.39 -0.02 2.10 16 28 H 0.06 2.50 6.03 -2.39 -0.01 2.49 16 29 H 0.02 0.87 7.79 -2.39 -0.02 0.85 16 30 H 0.35 13.94 8.22 -89.70 -0.74 13.20 16 31 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -58.01 269.86 3.92 -54.09 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.40 Total: 15.68 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 2.35 Total: -5.01 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -2.88 Total: -80.58 kcal Atomic # 9 Polarization: -30.23 SS G_CDS: 2.02 Total: -28.21 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -58.01 3.92 -54.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896699209.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.456 kcal (2) G-P(sol) polarization free energy of solvation -58.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds