Wall clock time and date at job start Sun Mar 29 2020 21:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 115.56603 * 2 1 4 4 C 1.53074 * 117.50784 * 214.30158 * 2 1 3 5 5 C 1.52993 * 59.98346 * 252.51958 * 4 2 1 6 6 H 1.08996 * 117.50145 * 252.49448 * 5 4 2 7 7 C 1.53006 * 117.49552 * 107.50448 * 5 4 2 8 8 N 1.46898 * 109.47006 * 116.25205 * 7 5 4 9 9 C 1.46903 * 110.99673 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.47201 * 35.00469 * 9 8 7 11 11 C 1.50708 * 109.46830 * 155.00071 * 9 8 7 12 12 H 1.07999 * 120.00002 * 0.02562 * 11 9 8 13 13 C 1.37873 * 120.00015 * 180.02562 * 11 9 8 14 14 N 1.31519 * 120.00060 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 120.00249 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47140 * 59.99689 * 15 13 11 17 17 H 1.48494 * 109.47715 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46957 * 300.00209 * 15 13 11 19 19 C 1.53003 * 109.47458 * 274.99797 * 9 8 7 20 20 F 1.39905 * 109.46679 * 60.00052 * 19 9 8 21 21 F 1.39897 * 109.47069 * 179.97438 * 19 9 8 22 22 F 1.39899 * 109.47325 * 300.00394 * 19 9 8 23 23 H 1.09004 * 109.46859 * 274.30795 * 1 2 3 24 24 H 1.08995 * 109.46989 * 34.30216 * 1 2 3 25 25 H 1.09001 * 109.47291 * 154.31019 * 1 2 3 26 26 H 1.09007 * 117.49399 * 145.03406 * 4 2 1 27 27 H 1.09004 * 117.53800 * 359.97438 * 4 2 1 28 28 H 1.09001 * 109.47002 * 236.24988 * 7 5 4 29 29 H 1.08993 * 109.46955 * 356.25425 * 7 5 4 30 30 H 1.00906 * 111.00348 * 56.04933 * 8 7 5 31 31 H 0.96997 * 120.00033 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2370 -1.1216 -0.7651 5 6 2.2365 -1.1211 0.7648 6 1 3.1714 -0.8753 1.2684 7 6 1.3588 -2.1563 1.4712 8 7 2.2083 -3.0746 2.2413 9 6 1.3979 -4.0845 2.9352 10 1 0.5390 -4.3478 2.3180 11 6 2.2330 -5.3140 3.1846 12 1 3.2629 -5.3422 2.8605 13 6 1.6824 -6.4028 3.8265 14 7 0.4284 -6.3684 4.2217 15 14 2.7176 -7.9265 4.1363 16 1 3.8872 -7.5675 4.9780 17 1 1.8981 -8.9479 4.8365 18 1 3.1905 -8.4755 2.8401 19 6 0.9119 -3.5186 4.2710 20 9 0.1366 -2.3772 4.0395 21 9 0.1396 -4.4802 4.9315 22 9 2.0143 -3.1807 5.0632 23 1 -0.3633 0.0772 1.0248 24 1 -0.3633 0.8489 -0.5791 25 1 -0.3634 -0.9261 -0.4455 26 1 3.1723 -0.8756 -1.2682 27 1 1.6125 -1.8598 -1.2682 28 1 0.6687 -1.6485 2.1450 29 1 0.7935 -2.7203 0.7293 30 1 2.7903 -2.5689 2.8923 31 1 0.0409 -7.1345 4.6730 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896699210.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:18 Heat of formation + Delta-G solvation = -120.647573 kcal Electronic energy + Delta-G solvation = -17866.121886 eV Core-core repulsion = 14540.716511 eV Total energy + Delta-G solvation = -3325.405375 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.50332 -46.17983 -45.65820 -38.08755 -35.17510 -32.52111 -28.93863 -27.93905 -24.69746 -24.14366 -21.29929 -20.92447 -19.28330 -17.24991 -16.78023 -16.73555 -15.88577 -15.65739 -14.73653 -13.99693 -13.82386 -13.26026 -13.04012 -12.83511 -12.67033 -12.59202 -12.38220 -12.16009 -12.04231 -11.87590 -11.72771 -11.34301 -11.03899 -10.85467 -10.66225 -10.56045 -10.11569 -9.79632 -9.50729 -9.44391 -8.54089 -7.57344 -6.10367 -4.27388 3.28789 3.32552 3.35840 3.95793 4.29796 4.42827 4.77401 4.90705 5.01117 5.12647 5.35062 5.46331 5.70205 5.76163 5.79652 5.88244 5.92764 6.02317 6.07572 6.12303 6.21242 6.31977 6.42670 6.60576 6.81875 7.60376 7.80487 8.10385 8.17274 8.78742 9.37595 10.82229 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.032000 B = 0.007951 C = 0.007037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.776986 B = 3520.877598 C = 3978.134663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.160 4.160 3 H 0.098 0.902 4 C -0.172 4.172 5 C -0.137 4.137 6 H 0.102 0.898 7 C 0.077 3.923 8 N -0.669 5.669 9 C 0.191 3.809 10 H 0.070 0.930 11 C -0.516 4.516 12 H 0.078 0.922 13 C 0.055 3.945 14 N -0.854 5.854 15 Si 0.912 3.088 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.394 3.606 20 F -0.232 7.232 21 F -0.137 7.137 22 F -0.208 7.208 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.334 0.666 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 8.446 -4.971 9.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.179 4.179 3 H 0.117 0.883 4 C -0.209 4.209 5 C -0.156 4.156 6 H 0.121 0.879 7 C -0.053 4.053 8 N -0.298 5.298 9 C 0.080 3.920 10 H 0.088 0.912 11 C -0.553 4.553 12 H 0.096 0.904 13 C -0.151 4.151 14 N -0.489 5.489 15 Si 0.739 3.261 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.337 3.663 20 F -0.214 7.214 21 F -0.118 7.118 22 F -0.190 7.190 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.152 0.848 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.374 7.919 -5.393 9.589 hybrid contribution 0.005 -0.093 1.252 1.255 sum 0.379 7.826 -4.141 8.862 Atomic orbital electron populations 1.21329 0.93081 1.01629 1.01900 1.22378 0.95375 0.94238 1.05927 0.88346 1.23109 1.02017 1.01077 0.94658 1.22350 1.00782 0.98574 0.93850 0.87943 1.21734 0.94179 0.92432 0.96927 1.60639 1.22830 1.16357 1.29971 1.20435 0.95666 0.91090 0.84792 0.91188 1.20808 0.98895 0.96224 1.39368 0.90382 1.25162 0.95546 0.99445 0.94933 1.70367 1.12396 1.29482 1.36629 0.86321 0.79864 0.81363 0.78545 1.19987 1.21184 1.19867 1.24305 0.74893 0.74452 0.92632 1.92979 1.77695 1.55966 1.94805 1.93418 1.75495 1.59774 1.83100 1.92984 1.55427 1.92868 1.77752 0.92113 0.92683 0.92398 0.89340 0.88821 0.93992 0.91255 0.84755 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.20 37.16 0.34 -1.12 16 2 C -0.16 -2.02 6.41 -90.58 -0.58 -2.60 16 3 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 4 C -0.17 -2.24 9.83 -26.70 -0.26 -2.51 16 5 C -0.14 -2.04 5.95 -90.62 -0.54 -2.58 16 6 H 0.10 1.51 8.13 -51.93 -0.42 1.09 16 7 C 0.08 1.38 4.75 -3.82 -0.02 1.36 16 8 N -0.67 -14.08 6.23 -107.94 -0.67 -14.75 16 9 C 0.19 4.72 2.26 -68.86 -0.16 4.56 16 10 H 0.07 1.83 7.80 -51.93 -0.41 1.43 16 11 C -0.52 -13.83 8.58 -34.44 -0.30 -14.13 16 12 H 0.08 2.09 7.81 -52.49 -0.41 1.68 16 13 C 0.06 1.49 5.20 -17.82 -0.09 1.40 16 14 N -0.85 -23.82 9.50 55.43 0.53 -23.29 16 15 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 C 0.39 9.82 2.74 37.16 0.10 9.92 16 20 F -0.23 -5.33 15.04 2.25 0.03 -5.30 16 21 F -0.14 -3.76 12.91 2.25 0.03 -3.73 16 22 F -0.21 -5.14 16.31 2.25 0.04 -5.11 16 23 H 0.06 0.76 7.84 -51.93 -0.41 0.36 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.09 1.24 7.94 -51.93 -0.41 0.82 16 28 H 0.04 0.78 5.65 -51.93 -0.29 0.49 16 29 H 0.07 1.26 7.79 -51.93 -0.40 0.86 16 30 H 0.33 6.85 7.87 -39.29 -0.31 6.55 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 267.24 15.07 4.03 4.03 Total: -1.00 -27.54 267.24 -6.42 -33.96 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -3.88 Total: 3.90 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -1.50 Total: -5.70 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.15 Total: -38.04 kcal Atomic # 9 Polarization: -14.24 SS G_CDS: 0.10 Total: -14.14 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.54 -6.42 -33.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896699210.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.687 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds