Wall clock time and date at job start Sun Mar 29 2020 21:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 115.56603 * 2 1 4 4 C 1.53074 * 117.50784 * 214.30158 * 2 1 3 5 5 C 1.52993 * 59.98346 * 252.51958 * 4 2 1 6 6 H 1.08996 * 117.50145 * 252.49448 * 5 4 2 7 7 C 1.53006 * 117.49552 * 107.50448 * 5 4 2 8 8 N 1.46898 * 109.47006 * 116.25205 * 7 5 4 9 9 C 1.46903 * 110.99673 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.47201 * 35.00469 * 9 8 7 11 11 C 1.50708 * 109.46830 * 155.00071 * 9 8 7 12 12 H 1.07999 * 120.00002 * 0.02562 * 11 9 8 13 13 C 1.37873 * 120.00015 * 180.02562 * 11 9 8 14 14 N 1.31519 * 120.00060 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 120.00249 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47140 * 59.99689 * 15 13 11 17 17 H 1.48494 * 109.47715 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46957 * 300.00209 * 15 13 11 19 19 C 1.53003 * 109.47458 * 274.99797 * 9 8 7 20 20 F 1.39905 * 109.46679 * 60.00052 * 19 9 8 21 21 F 1.39897 * 109.47069 * 179.97438 * 19 9 8 22 22 F 1.39899 * 109.47325 * 300.00394 * 19 9 8 23 23 H 1.09004 * 109.46859 * 274.30795 * 1 2 3 24 24 H 1.08995 * 109.46989 * 34.30216 * 1 2 3 25 25 H 1.09001 * 109.47291 * 154.31019 * 1 2 3 26 26 H 1.09007 * 117.49399 * 145.03406 * 4 2 1 27 27 H 1.09004 * 117.53800 * 359.97438 * 4 2 1 28 28 H 1.09001 * 109.47002 * 236.24988 * 7 5 4 29 29 H 1.08993 * 109.46955 * 356.25425 * 7 5 4 30 30 H 1.00906 * 111.00348 * 56.04933 * 8 7 5 31 31 H 0.96997 * 120.00033 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2370 -1.1216 -0.7651 5 6 2.2365 -1.1211 0.7648 6 1 3.1714 -0.8753 1.2684 7 6 1.3588 -2.1563 1.4712 8 7 2.2083 -3.0746 2.2413 9 6 1.3979 -4.0845 2.9352 10 1 0.5390 -4.3478 2.3180 11 6 2.2330 -5.3140 3.1846 12 1 3.2629 -5.3422 2.8605 13 6 1.6824 -6.4028 3.8265 14 7 0.4284 -6.3684 4.2217 15 14 2.7176 -7.9265 4.1363 16 1 3.8872 -7.5675 4.9780 17 1 1.8981 -8.9479 4.8365 18 1 3.1905 -8.4755 2.8401 19 6 0.9119 -3.5186 4.2710 20 9 0.1366 -2.3772 4.0395 21 9 0.1396 -4.4802 4.9315 22 9 2.0143 -3.1807 5.0632 23 1 -0.3633 0.0772 1.0248 24 1 -0.3633 0.8489 -0.5791 25 1 -0.3634 -0.9261 -0.4455 26 1 3.1723 -0.8756 -1.2682 27 1 1.6125 -1.8598 -1.2682 28 1 0.6687 -1.6485 2.1450 29 1 0.7935 -2.7203 0.7293 30 1 2.7903 -2.5689 2.8923 31 1 0.0409 -7.1345 4.6730 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896699210.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:18 Heat of formation + Delta-G solvation = -136.729017 kcal Electronic energy + Delta-G solvation = -17866.819229 eV Core-core repulsion = 14540.716511 eV Total energy + Delta-G solvation = -3326.102719 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.51063 -48.15741 -47.74148 -39.28421 -36.89388 -34.46503 -30.54588 -29.15053 -26.59928 -25.87242 -22.88432 -22.37676 -20.49258 -19.21767 -18.75794 -18.74730 -17.77810 -16.86285 -16.63716 -15.58205 -15.37948 -15.10288 -14.76161 -14.56399 -14.41887 -14.21808 -14.11858 -13.97240 -13.81937 -13.57380 -13.01641 -12.86868 -12.64692 -12.47025 -12.33159 -12.14107 -11.94670 -11.49127 -10.78368 -10.66166 -10.57585 -9.29598 -8.14847 -6.39006 1.45728 1.47614 1.55914 2.38310 2.42408 2.84083 2.96644 3.30399 3.73401 3.78189 3.82979 4.01038 4.08826 4.19028 4.46597 4.49343 4.67485 4.81256 4.87767 4.97180 4.98152 5.02504 5.19983 5.35113 5.47822 5.63596 5.78567 6.23714 6.47932 6.69811 7.29979 8.77158 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.032000 B = 0.007951 C = 0.007037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.776986 B = 3520.877598 C = 3978.134663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.144 4.144 3 H 0.119 0.881 4 C -0.166 4.166 5 C -0.159 4.159 6 H 0.105 0.895 7 C 0.082 3.918 8 N -0.667 5.667 9 C 0.196 3.804 10 H 0.049 0.951 11 C -0.535 4.535 12 H 0.074 0.926 13 C 0.010 3.990 14 N -0.880 5.880 15 Si 0.974 3.026 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.265 1.265 19 C 0.395 3.605 20 F -0.221 7.221 21 F -0.153 7.153 22 F -0.207 7.207 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.033 0.967 29 H 0.061 0.939 30 H 0.338 0.662 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 9.069 -5.711 10.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 H 0.137 0.863 4 C -0.202 4.202 5 C -0.178 4.178 6 H 0.123 0.877 7 C -0.047 4.047 8 N -0.297 5.297 9 C 0.084 3.916 10 H 0.067 0.933 11 C -0.572 4.572 12 H 0.093 0.907 13 C -0.193 4.193 14 N -0.515 5.515 15 Si 0.798 3.202 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.190 1.190 19 C 0.338 3.662 20 F -0.203 7.203 21 F -0.134 7.134 22 F -0.189 7.189 23 H 0.069 0.931 24 H 0.096 0.904 25 H 0.069 0.931 26 H 0.124 0.876 27 H 0.108 0.892 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.156 0.844 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.164 8.563 -6.147 10.605 hybrid contribution -0.270 -0.219 1.454 1.495 sum 0.894 8.344 -4.693 9.615 Atomic orbital electron populations 1.21372 0.92831 1.02345 1.01677 1.22507 0.95604 0.94530 1.03578 0.86258 1.23186 1.02848 1.01124 0.93087 1.22247 1.01008 0.99517 0.95011 0.87668 1.21702 0.94280 0.92421 0.96310 1.60609 1.22807 1.16804 1.29445 1.20219 0.95032 0.91846 0.84477 0.93282 1.21065 0.98979 0.97380 1.39747 0.90743 1.25950 0.96602 1.02201 0.94581 1.70484 1.13705 1.30227 1.37106 0.85360 0.78302 0.77892 0.78653 1.19684 1.20741 1.19011 1.24235 0.74832 0.74552 0.92570 1.92993 1.77406 1.55193 1.94724 1.93381 1.75930 1.60675 1.83423 1.92978 1.55325 1.92830 1.77741 0.93052 0.90393 0.93084 0.87590 0.89242 0.94854 0.92030 0.84384 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.20 71.98 0.66 -2.10 16 2 C -0.14 -3.25 6.41 -10.77 -0.07 -3.32 16 3 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.17 -3.96 9.83 30.62 0.30 -3.66 16 5 C -0.16 -4.52 5.95 -10.80 -0.06 -4.58 16 6 H 0.11 2.93 8.13 -2.39 -0.02 2.91 16 7 C 0.08 2.91 4.75 86.31 0.41 3.32 16 8 N -0.67 -28.03 6.23 -495.43 -3.09 -31.12 16 9 C 0.20 9.77 2.26 44.17 0.10 9.87 16 10 H 0.05 2.64 7.80 -2.39 -0.02 2.62 16 11 C -0.53 -28.74 8.58 25.60 0.22 -28.52 16 12 H 0.07 3.97 7.81 -2.91 -0.02 3.95 16 13 C 0.01 0.55 5.20 84.65 0.44 0.99 16 14 N -0.88 -49.37 9.50 21.45 0.20 -49.17 16 15 Si 0.97 42.71 29.54 68.60 2.03 44.74 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 C 0.40 19.77 2.74 71.98 0.20 19.96 16 20 F -0.22 -10.13 15.04 44.97 0.68 -9.45 16 21 F -0.15 -8.48 12.91 44.97 0.58 -7.90 16 22 F -0.21 -10.16 16.31 44.97 0.73 -9.43 16 23 H 0.05 1.23 7.84 -2.38 -0.02 1.21 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.18 7.90 -2.39 -0.02 1.16 16 26 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.09 2.22 7.94 -2.39 -0.02 2.20 16 28 H 0.03 1.24 5.65 -2.39 -0.01 1.23 16 29 H 0.06 2.26 7.79 -2.39 -0.02 2.24 16 30 H 0.34 13.73 7.87 -89.69 -0.71 13.02 16 31 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -57.37 267.24 3.77 -53.60 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.44 Total: 16.77 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 2.20 Total: -8.04 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -2.88 Total: -80.29 kcal Atomic # 9 Polarization: -28.78 SS G_CDS: 1.99 Total: -26.79 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -57.37 3.77 -53.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896699210.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.130 kcal (2) G-P(sol) polarization free energy of solvation -57.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds