Wall clock time and date at job start Sun Mar 29 2020 21:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 H 1.08002 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00273 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00148 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47300 * 89.99362 * 9 7 5 11 11 H 1.48494 * 109.47121 * 209.99735 * 9 7 5 12 12 H 1.48502 * 109.46604 * 329.99774 * 9 7 5 13 13 S 1.81396 * 109.47360 * 239.99820 * 2 1 3 14 14 C 1.81396 * 102.99849 * 64.99961 * 13 2 1 15 15 C 1.50701 * 109.47105 * 180.02562 * 14 13 2 16 16 C 1.38656 * 120.78888 * 269.71815 * 15 14 13 17 17 C 1.38204 * 119.15721 * 179.79642 * 16 15 14 18 18 N 1.31872 * 120.76828 * 0.49364 * 17 16 15 19 19 C 1.31866 * 121.72370 * 359.73252 * 18 17 16 20 20 C 1.38209 * 120.76484 * 0.03377 * 19 18 17 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 25 25 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 26 26 H 0.97001 * 120.00015 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.47618 * 299.99997 * 14 13 2 28 28 H 1.09003 * 109.47509 * 60.00592 * 14 13 2 29 29 H 1.07995 * 120.42045 * 0.02562 * 16 15 14 30 30 H 1.08003 * 119.61721 * 180.20557 * 17 16 15 31 31 H 1.08005 * 119.61898 * 179.97438 * 19 18 17 32 32 H 1.07998 * 120.41261 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5411 -1.1010 2.4131 9 14 3.3016 -2.1097 3.6948 10 1 3.1710 -3.5395 3.3157 11 1 4.0449 -2.0031 4.9759 12 1 1.9505 -1.5148 3.8554 13 16 2.1347 -0.8551 -1.4810 14 6 1.5665 0.2152 -2.8308 15 6 1.9974 -0.3696 -4.1511 16 6 3.2158 -0.0251 -4.7162 17 6 3.5792 -0.5850 -5.9263 18 7 2.7784 -1.4294 -6.5466 19 6 1.6109 -1.7762 -6.0412 20 6 1.1824 -1.2606 -4.8325 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7517 -1.7714 1.2056 26 1 6.0256 -1.5084 3.1481 27 1 0.4793 0.2881 -2.8037 28 1 2.0002 1.2084 -2.7142 29 1 3.8741 0.6692 -4.2152 30 1 4.5281 -0.3243 -6.3716 31 1 0.9817 -2.4704 -6.5784 32 1 0.2249 -1.5482 -4.4241 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901631265.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:49 Heat of formation + Delta-G solvation = 17.698440 kcal Electronic energy + Delta-G solvation = -13881.783634 eV Core-core repulsion = 11546.987004 eV Total energy + Delta-G solvation = -2334.796630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.06360 -34.71834 -33.93468 -32.11164 -31.18631 -28.44041 -27.51468 -23.44639 -23.15193 -22.22888 -20.40360 -16.77216 -16.72202 -16.35296 -15.64809 -15.53063 -14.83546 -14.40077 -13.78598 -13.60330 -13.35233 -13.04971 -12.72073 -12.48889 -12.21310 -11.83277 -11.53616 -11.32622 -11.02234 -10.51448 -10.06186 -9.74454 -9.54312 -9.41462 -9.24918 -9.13923 -9.04768 -8.54290 -7.00944 -6.03739 -4.01675 1.05809 1.15816 2.38297 3.18950 3.29651 3.37057 3.38156 3.89660 4.43626 4.45952 4.58020 4.69603 5.10621 5.14832 5.29417 5.29817 5.45245 5.51361 5.57535 5.68809 5.79777 5.80870 5.98049 6.18273 6.33688 6.37504 6.47270 6.70097 7.00812 7.16418 7.70891 7.96549 8.51654 9.03554 9.57046 11.09211 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.034404 B = 0.005671 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.659597 B = 4936.226828 C = 5367.772173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 H 0.080 0.920 4 C 0.004 3.996 5 C -0.516 4.516 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.874 3.126 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.267 1.267 13 S -0.206 6.206 14 C -0.075 4.075 15 C -0.014 4.014 16 C -0.156 4.156 17 C 0.097 3.903 18 N -0.491 5.491 19 C 0.095 3.905 20 C -0.161 4.161 21 H 0.062 0.938 22 H 0.044 0.956 23 H 0.060 0.940 24 H 0.032 0.968 25 H 0.020 0.980 26 H 0.263 0.737 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.075 2.451 -12.447 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 H 0.099 0.901 4 C -0.035 4.035 5 C -0.554 4.554 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.191 1.191 13 S 0.023 5.977 14 C -0.223 4.223 15 C -0.023 4.023 16 C -0.177 4.177 17 C -0.059 4.059 18 N -0.201 5.201 19 C -0.062 4.062 20 C -0.182 4.182 21 H 0.081 0.919 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.156 0.844 30 H 0.173 0.827 31 H 0.171 0.829 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.078 1.115 -13.165 16.030 hybrid contribution -1.272 0.971 1.809 2.415 sum -10.350 2.086 -11.356 15.506 Atomic orbital electron populations 1.22158 0.95232 1.02309 1.00980 1.23212 0.95864 1.01865 0.96018 0.90121 1.19485 0.98119 0.95339 0.90529 1.21115 0.89164 1.35466 1.09669 0.90075 1.24979 0.94700 0.95818 0.97720 1.69903 1.06459 1.45239 1.32227 0.86872 0.80405 0.80798 0.81794 1.20236 1.21324 1.19135 1.87558 1.75491 1.36058 0.98562 1.22403 1.03579 1.02008 0.94285 1.19712 0.94058 0.94810 0.93739 1.22108 0.96694 1.01889 0.97053 1.22727 0.98577 0.92530 0.92091 1.67643 1.04603 1.12913 1.34907 1.22691 0.92840 0.97483 0.93151 1.22028 1.01403 0.98215 0.96584 0.91895 0.93686 0.92101 0.95042 0.96157 0.92746 0.89598 0.89286 0.84422 0.82711 0.82868 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.10 37.16 0.34 -1.88 16 2 C -0.04 -0.78 2.77 -26.73 -0.07 -0.85 16 3 H 0.08 1.54 8.14 -51.92 -0.42 1.12 16 4 C 0.00 0.08 3.51 -27.89 -0.10 -0.01 16 5 C -0.52 -14.41 9.09 -34.44 -0.31 -14.73 16 6 H 0.08 2.46 7.84 -52.49 -0.41 2.05 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 9 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 S -0.21 -3.88 20.44 -107.50 -2.20 -6.08 16 14 C -0.08 -1.05 5.81 36.01 0.21 -0.84 16 15 C -0.01 -0.19 5.18 -104.32 -0.54 -0.73 16 16 C -0.16 -2.03 9.82 -39.44 -0.39 -2.41 16 17 C 0.10 1.22 11.18 -17.55 -0.20 1.02 16 18 N -0.49 -6.64 10.36 -13.25 -0.14 -6.77 16 19 C 0.10 1.14 11.18 -17.55 -0.20 0.94 16 20 C -0.16 -1.95 9.82 -39.44 -0.39 -2.34 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 22 H 0.04 0.57 6.92 -51.93 -0.36 0.21 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 25 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 27 H 0.09 1.04 7.10 -51.92 -0.37 0.67 16 28 H 0.09 1.18 8.10 -51.92 -0.42 0.75 16 29 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 31 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 285.62 15.07 4.30 4.30 Total: -1.00 -31.62 285.62 -8.12 -39.75 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.45 Total: -1.23 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -1.74 Total: -19.93 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.64 Total: -33.68 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -2.20 Total: -6.08 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.62 -8.12 -39.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901631265.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.444 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds