Wall clock time and date at job start Sun Mar 29 2020 21:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 H 1.08002 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00273 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00148 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47300 * 89.99362 * 9 7 5 11 11 H 1.48494 * 109.47121 * 209.99735 * 9 7 5 12 12 H 1.48502 * 109.46604 * 329.99774 * 9 7 5 13 13 S 1.81396 * 109.47360 * 239.99820 * 2 1 3 14 14 C 1.81396 * 102.99849 * 64.99961 * 13 2 1 15 15 C 1.50701 * 109.47105 * 180.02562 * 14 13 2 16 16 C 1.38656 * 120.78888 * 269.71815 * 15 14 13 17 17 C 1.38204 * 119.15721 * 179.79642 * 16 15 14 18 18 N 1.31872 * 120.76828 * 0.49364 * 17 16 15 19 19 C 1.31866 * 121.72370 * 359.73252 * 18 17 16 20 20 C 1.38209 * 120.76484 * 0.03377 * 19 18 17 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 25 25 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 26 26 H 0.97001 * 120.00015 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.47618 * 299.99997 * 14 13 2 28 28 H 1.09003 * 109.47509 * 60.00592 * 14 13 2 29 29 H 1.07995 * 120.42045 * 0.02562 * 16 15 14 30 30 H 1.08003 * 119.61721 * 180.20557 * 17 16 15 31 31 H 1.08005 * 119.61898 * 179.97438 * 19 18 17 32 32 H 1.07998 * 120.41261 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5411 -1.1010 2.4131 9 14 3.3016 -2.1097 3.6948 10 1 3.1710 -3.5395 3.3157 11 1 4.0449 -2.0031 4.9759 12 1 1.9505 -1.5148 3.8554 13 16 2.1347 -0.8551 -1.4810 14 6 1.5665 0.2152 -2.8308 15 6 1.9974 -0.3696 -4.1511 16 6 3.2158 -0.0251 -4.7162 17 6 3.5792 -0.5850 -5.9263 18 7 2.7784 -1.4294 -6.5466 19 6 1.6109 -1.7762 -6.0412 20 6 1.1824 -1.2606 -4.8325 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7517 -1.7714 1.2056 26 1 6.0256 -1.5084 3.1481 27 1 0.4793 0.2881 -2.8037 28 1 2.0002 1.2084 -2.7142 29 1 3.8741 0.6692 -4.2152 30 1 4.5281 -0.3243 -6.3716 31 1 0.9817 -2.4704 -6.5784 32 1 0.2249 -1.5482 -4.4241 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901631265.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:49 Heat of formation + Delta-G solvation = -0.941452 kcal Electronic energy + Delta-G solvation = -13882.591920 eV Core-core repulsion = 11546.987004 eV Total energy + Delta-G solvation = -2335.604917 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02010 -36.42720 -34.95872 -34.12471 -32.12171 -30.06872 -28.74139 -24.93116 -24.38688 -23.29596 -22.02647 -18.89327 -17.83677 -17.34628 -16.95158 -16.51231 -16.44551 -16.06901 -14.99679 -14.73291 -14.63546 -14.36013 -14.21364 -13.93125 -13.64678 -13.33359 -12.85681 -12.67271 -12.45919 -12.17781 -11.78372 -11.59539 -11.40930 -10.82502 -10.67136 -10.45679 -10.28292 -10.07480 -8.48645 -8.23914 -6.27388 -0.02492 0.21968 1.12888 1.36038 1.36642 1.47258 1.84861 2.36890 2.93039 3.10632 3.51603 3.63140 3.74160 4.03567 4.15624 4.21351 4.21896 4.34415 4.48786 4.55651 4.72221 4.89050 4.90601 4.94603 5.02377 5.09035 5.23694 5.36188 5.38323 5.63545 5.77230 6.31086 6.79564 7.01733 7.34685 8.91575 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.034404 B = 0.005671 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.659597 B = 4936.226828 C = 5367.772173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 H 0.072 0.928 4 C 0.005 3.995 5 C -0.516 4.516 6 H 0.040 0.960 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.241 1.241 13 S -0.278 6.278 14 C -0.048 4.048 15 C -0.033 4.033 16 C -0.168 4.168 17 C 0.089 3.911 18 N -0.511 5.511 19 C 0.090 3.910 20 C -0.159 4.159 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.018 0.982 26 H 0.264 0.736 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.140 0.860 30 H 0.176 0.824 31 H 0.183 0.817 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.743 2.280 -12.781 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 H 0.091 0.909 4 C -0.033 4.033 5 C -0.554 4.554 6 H 0.058 0.942 7 C -0.193 4.193 8 N -0.593 5.593 9 Si 0.767 3.233 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.164 1.164 13 S -0.049 6.049 14 C -0.196 4.196 15 C -0.042 4.042 16 C -0.189 4.189 17 C -0.067 4.067 18 N -0.221 5.221 19 C -0.066 4.066 20 C -0.181 4.181 21 H 0.084 0.916 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.059 0.941 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.130 0.870 28 H 0.112 0.888 29 H 0.158 0.842 30 H 0.193 0.807 31 H 0.200 0.800 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.768 0.958 -13.500 17.935 hybrid contribution -0.389 1.071 1.749 2.088 sum -12.158 2.029 -11.750 17.029 Atomic orbital electron populations 1.22077 0.91512 1.03121 1.02977 1.23065 0.98713 1.00365 0.94006 0.90925 1.19414 0.94791 0.95885 0.93259 1.21391 0.91839 1.34013 1.08155 0.94179 1.25943 0.95527 0.97115 1.00672 1.70069 1.08504 1.47185 1.33517 0.85764 0.80025 0.79282 0.78238 1.19913 1.21111 1.16431 1.87695 1.77245 1.38450 1.01530 1.22329 1.04868 1.00539 0.91820 1.19837 0.94725 0.95887 0.93781 1.22270 0.96887 1.02269 0.97497 1.23082 0.99353 0.92231 0.91989 1.67699 1.05430 1.13386 1.35542 1.23213 0.92647 0.97483 0.93266 1.22293 1.02018 0.97292 0.96448 0.91641 0.90983 0.90807 0.94127 0.96325 0.92748 0.87032 0.88847 0.84173 0.80701 0.80004 0.82629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.10 71.98 0.66 -3.03 16 2 C -0.03 -1.21 2.77 30.59 0.08 -1.13 16 3 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 4 C 0.00 0.21 3.51 29.85 0.10 0.32 16 5 C -0.52 -29.42 9.09 25.60 0.23 -29.18 16 6 H 0.04 2.55 7.84 -2.91 -0.02 2.52 16 7 C 0.00 0.22 5.47 84.66 0.46 0.68 16 8 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 9 Si 0.94 44.27 27.47 68.60 1.88 46.16 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 13 S -0.28 -10.36 20.44 -56.49 -1.15 -11.52 16 14 C -0.05 -1.25 5.81 71.24 0.41 -0.84 16 15 C -0.03 -0.84 5.18 -19.67 -0.10 -0.94 16 16 C -0.17 -4.25 9.82 22.36 0.22 -4.03 16 17 C 0.09 2.15 11.18 84.68 0.95 3.10 16 18 N -0.51 -13.06 10.36 -195.83 -2.03 -15.09 16 19 C 0.09 1.96 11.18 84.68 0.95 2.91 16 20 C -0.16 -3.49 9.82 22.36 0.22 -3.27 16 21 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.07 1.54 6.92 -2.39 -0.02 1.52 16 23 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.04 1.77 7.20 -2.39 -0.02 1.76 16 25 H 0.02 0.85 7.57 -2.39 -0.02 0.84 16 26 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 27 H 0.11 2.31 7.10 -2.39 -0.02 2.29 16 28 H 0.09 2.33 8.10 -2.39 -0.02 2.31 16 29 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 30 H 0.18 3.26 8.06 -2.91 -0.02 3.23 16 31 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -69.89 285.62 4.22 -65.68 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.03 Total: 10.27 kcal Atomic # 6 Polarization: -39.59 SS G_CDS: 4.19 Total: -35.41 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -1.73 Total: -75.18 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Atomic # 16 Polarization: -10.36 SS G_CDS: -1.15 Total: -11.52 kcal Total: -69.89 4.22 -65.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901631265.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.737 kcal (2) G-P(sol) polarization free energy of solvation -69.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds