Wall clock time and date at job start Sun Mar 29 2020 21:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 S 1.81393 * 109.47041 * 120.00602 * 2 1 3 14 14 C 1.81396 * 103.00113 * 294.99698 * 13 2 1 15 15 C 1.50699 * 109.47496 * 179.97438 * 14 13 2 16 16 C 1.38648 * 120.79433 * 269.72276 * 15 14 13 17 17 C 1.38205 * 119.16751 * 179.79945 * 16 15 14 18 18 N 1.31867 * 120.75719 * 0.48294 * 17 16 15 19 19 C 1.31868 * 121.73134 * 359.74565 * 18 17 16 20 20 C 1.38203 * 120.76310 * 0.02562 * 19 18 17 21 21 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 23 23 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 24 24 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 25 25 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 26 26 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 27 27 H 1.09000 * 109.47483 * 300.00248 * 14 13 2 28 28 H 1.09007 * 109.47229 * 60.00371 * 14 13 2 29 29 H 1.08000 * 120.41299 * 359.97438 * 16 15 14 30 30 H 1.07993 * 119.62164 * 180.20543 * 17 16 15 31 31 H 1.07999 * 119.61915 * 180.02562 * 19 18 17 32 32 H 1.07995 * 120.41738 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 16 2.1347 -0.8553 1.4810 14 6 1.5665 0.2150 2.8309 15 6 1.9974 -0.3699 4.1512 16 6 1.1799 -1.2564 4.8353 17 6 1.6103 -1.7758 6.0416 18 7 2.7784 -1.4298 6.5465 19 6 3.5796 -0.5860 5.9260 20 6 3.2183 -0.0298 4.7135 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 1.6054 -0.2616 -2.1370 25 1 1.7516 -1.7714 -1.2057 26 1 2.6101 -1.9094 -3.2568 27 1 2.0002 1.2082 2.7142 28 1 0.4792 0.2879 2.8038 29 1 0.2201 -1.5398 4.4293 30 1 0.9809 -2.4695 6.5791 31 1 4.5291 -0.3266 6.3704 32 1 3.8786 0.6610 4.2104 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901631267.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:51 Heat of formation + Delta-G solvation = 9.793999 kcal Electronic energy + Delta-G solvation = -13894.957623 eV Core-core repulsion = 11559.818230 eV Total energy + Delta-G solvation = -2335.139393 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.10453 -34.84613 -33.97498 -32.15103 -31.22826 -28.08552 -26.97045 -23.48413 -23.13199 -22.29727 -20.77376 -16.98723 -16.63071 -16.39175 -15.66716 -15.56352 -14.80010 -13.83906 -13.77056 -13.64780 -13.42230 -13.39751 -12.98386 -12.50887 -11.85908 -11.58650 -11.36626 -11.18781 -10.96875 -10.58330 -10.16965 -9.94513 -9.58300 -9.41841 -9.18046 -9.11782 -8.58490 -8.33066 -7.05527 -6.35209 -4.04433 1.02167 1.11670 2.36000 3.18066 3.45245 3.48641 3.66292 3.85682 4.41982 4.54302 4.55705 4.65634 5.06821 5.10544 5.25961 5.41696 5.45391 5.50957 5.58494 5.65471 5.75537 5.81465 5.94124 6.19014 6.29713 6.42247 6.51630 6.65983 7.15998 7.30838 7.92578 8.13947 8.47747 8.86673 9.65768 11.04417 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.027805 B = 0.006036 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.771349 B = 4637.615035 C = 5347.494858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 H 0.076 0.924 4 C 0.027 3.973 5 C -0.594 4.594 6 H 0.057 0.943 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.287 1.287 13 S -0.209 6.209 14 C -0.076 4.076 15 C -0.014 4.014 16 C -0.160 4.160 17 C 0.096 3.904 18 N -0.491 5.491 19 C 0.097 3.903 20 C -0.157 4.157 21 H 0.062 0.938 22 H 0.042 0.958 23 H 0.060 0.940 24 H 0.023 0.977 25 H 0.017 0.983 26 H 0.267 0.733 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 4.365 14.870 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 H 0.094 0.906 4 C -0.011 4.011 5 C -0.633 4.633 6 H 0.075 0.925 7 C -0.188 4.188 8 N -0.550 5.550 9 Si 0.895 3.105 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.213 1.213 13 S 0.020 5.980 14 C -0.223 4.223 15 C -0.023 4.023 16 C -0.182 4.182 17 C -0.061 4.061 18 N -0.201 5.201 19 C -0.059 4.059 20 C -0.179 4.179 21 H 0.081 0.919 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.041 0.959 25 H 0.035 0.965 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.153 0.847 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.109 2.648 14.799 15.352 hybrid contribution -2.339 1.973 -0.092 3.061 sum -5.448 4.621 14.708 16.351 Atomic orbital electron populations 1.22140 0.95288 1.02279 1.00821 1.23274 0.95886 1.01528 0.96265 0.90607 1.19126 0.97627 0.95000 0.89380 1.22028 0.91184 1.38771 1.11283 0.92496 1.25812 1.06896 0.93423 0.92640 1.70800 1.10215 1.39696 1.34305 0.83563 0.74462 0.76255 0.76173 1.20848 1.21475 1.21295 1.87509 1.75452 1.36365 0.98672 1.22405 1.03658 1.01930 0.94328 1.19716 0.94034 0.94810 0.93722 1.22039 1.01405 0.98184 0.96570 1.22697 0.92804 0.97424 0.93137 1.67641 1.04623 1.12904 1.34889 1.22720 0.98592 0.92577 0.92044 1.22088 0.96714 1.01968 0.97114 0.91910 0.93846 0.92152 0.95950 0.96518 0.92269 0.89396 0.89593 0.84741 0.82811 0.82721 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.10 37.16 0.34 -2.02 16 2 C -0.04 -0.82 2.77 -26.73 -0.07 -0.89 16 3 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 4 C 0.03 0.67 3.76 -27.88 -0.10 0.56 16 5 C -0.59 -16.65 8.53 -34.44 -0.29 -16.94 16 6 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 7 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 8 N -0.91 -27.97 13.65 55.43 0.76 -27.21 16 9 Si 1.07 25.60 29.90 -169.99 -5.08 20.52 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 13 S -0.21 -4.02 20.44 -107.50 -2.20 -6.22 16 14 C -0.08 -1.07 5.81 36.01 0.21 -0.86 16 15 C -0.01 -0.18 5.18 -104.32 -0.54 -0.72 16 16 C -0.16 -1.96 9.82 -39.44 -0.39 -2.35 16 17 C 0.10 1.14 11.18 -17.55 -0.20 0.95 16 18 N -0.49 -6.56 10.36 -13.26 -0.14 -6.70 16 19 C 0.10 1.19 11.18 -17.55 -0.20 0.99 16 20 C -0.16 -2.01 9.82 -39.44 -0.39 -2.39 16 21 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.04 0.59 6.92 -51.93 -0.36 0.23 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.02 0.58 8.01 -51.93 -0.42 0.16 16 25 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 26 H 0.27 8.11 7.22 -40.82 -0.29 7.81 16 27 H 0.09 1.17 8.10 -51.92 -0.42 0.75 16 28 H 0.09 1.08 7.10 -51.92 -0.37 0.71 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 287.91 15.07 4.34 4.34 Total: -1.00 -31.72 287.91 -8.48 -40.20 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -4.43 Total: -1.61 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -1.73 Total: -23.32 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.62 Total: -33.91 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.52 kcal Atomic # 16 Polarization: -4.02 SS G_CDS: -2.20 Total: -6.22 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.72 -8.48 -40.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901631267.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.994 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds