Wall clock time and date at job start Sun Mar 29 2020 21:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 S 1.81393 * 109.47041 * 120.00602 * 2 1 3 14 14 C 1.81396 * 103.00113 * 294.99698 * 13 2 1 15 15 C 1.50699 * 109.47496 * 179.97438 * 14 13 2 16 16 C 1.38648 * 120.79433 * 269.72276 * 15 14 13 17 17 C 1.38205 * 119.16751 * 179.79945 * 16 15 14 18 18 N 1.31867 * 120.75719 * 0.48294 * 17 16 15 19 19 C 1.31868 * 121.73134 * 359.74565 * 18 17 16 20 20 C 1.38203 * 120.76310 * 0.02562 * 19 18 17 21 21 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 23 23 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 24 24 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 25 25 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 26 26 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 27 27 H 1.09000 * 109.47483 * 300.00248 * 14 13 2 28 28 H 1.09007 * 109.47229 * 60.00371 * 14 13 2 29 29 H 1.08000 * 120.41299 * 359.97438 * 16 15 14 30 30 H 1.07993 * 119.62164 * 180.20543 * 17 16 15 31 31 H 1.07999 * 119.61915 * 180.02562 * 19 18 17 32 32 H 1.07995 * 120.41738 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 16 2.1347 -0.8553 1.4810 14 6 1.5665 0.2150 2.8309 15 6 1.9974 -0.3699 4.1512 16 6 1.1799 -1.2564 4.8353 17 6 1.6103 -1.7758 6.0416 18 7 2.7784 -1.4298 6.5465 19 6 3.5796 -0.5860 5.9260 20 6 3.2183 -0.0298 4.7135 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 1.6054 -0.2616 -2.1370 25 1 1.7516 -1.7714 -1.2057 26 1 2.6101 -1.9094 -3.2568 27 1 2.0002 1.2082 2.7142 28 1 0.4792 0.2879 2.8038 29 1 0.2201 -1.5398 4.4293 30 1 0.9809 -2.4695 6.5791 31 1 4.5291 -0.3266 6.3704 32 1 3.8786 0.6610 4.2104 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901631267.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:51 Heat of formation + Delta-G solvation = -8.093326 kcal Electronic energy + Delta-G solvation = -13895.733275 eV Core-core repulsion = 11559.818230 eV Total energy + Delta-G solvation = -2335.915045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.04029 -36.71771 -34.98886 -34.08661 -32.14035 -29.43448 -28.55046 -25.15265 -24.40638 -23.38325 -22.37200 -19.00544 -17.83120 -17.36721 -16.99994 -16.51612 -16.20301 -15.67270 -15.36870 -14.92945 -14.72702 -14.58805 -14.08701 -13.78397 -13.40064 -13.09985 -12.98913 -12.64058 -12.48065 -12.32190 -11.99888 -11.75273 -10.90144 -10.69362 -10.52653 -10.46274 -10.31187 -10.09170 -8.68462 -8.52605 -6.34100 -0.06001 0.20311 1.06968 1.51504 1.59963 1.78101 1.79206 2.56787 2.91270 3.18939 3.48557 3.61505 3.71075 3.96410 4.11273 4.14581 4.19767 4.31292 4.40822 4.49622 4.69863 4.77402 4.87064 4.89219 4.99551 5.03916 5.13882 5.30877 5.34148 5.75370 5.97858 6.21305 6.58850 7.00234 7.44302 8.75309 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.027805 B = 0.006036 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.771349 B = 4637.615035 C = 5347.494858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 H 0.075 0.925 4 C 0.029 3.971 5 C -0.599 4.599 6 H 0.055 0.945 7 C -0.039 4.039 8 N -0.942 5.942 9 Si 1.112 2.888 10 H -0.285 1.285 11 H -0.266 1.266 12 H -0.275 1.275 13 S -0.270 6.270 14 C -0.049 4.049 15 C -0.034 4.034 16 C -0.161 4.161 17 C 0.091 3.909 18 N -0.510 5.510 19 C 0.091 3.909 20 C -0.165 4.165 21 H 0.057 0.943 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.007 0.993 25 H -0.009 1.009 26 H 0.254 0.746 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.152 0.848 30 H 0.181 0.819 31 H 0.179 0.821 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.348 5.274 16.638 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 H 0.093 0.907 4 C -0.009 4.009 5 C -0.637 4.637 6 H 0.073 0.927 7 C -0.236 4.236 8 N -0.580 5.580 9 Si 0.934 3.066 10 H -0.210 1.210 11 H -0.191 1.191 12 H -0.200 1.200 13 S -0.041 6.041 14 C -0.197 4.197 15 C -0.043 4.043 16 C -0.183 4.183 17 C -0.066 4.066 18 N -0.220 5.220 19 C -0.065 4.065 20 C -0.186 4.186 21 H 0.077 0.923 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.025 0.975 25 H 0.009 0.991 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.125 0.875 29 H 0.170 0.830 30 H 0.198 0.802 31 H 0.196 0.804 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.203 3.573 16.571 17.252 hybrid contribution -2.353 1.693 -0.516 2.945 sum -5.557 5.267 16.055 17.787 Atomic orbital electron populations 1.22057 0.92163 1.02638 1.02751 1.23042 0.98391 1.00298 0.94359 0.90701 1.18987 0.96289 0.93958 0.91671 1.22373 0.92868 1.37746 1.10704 0.92715 1.27271 1.11039 0.92848 0.92423 1.70926 1.09578 1.41807 1.35657 0.82995 0.69646 0.77544 0.76444 1.21026 1.19124 1.20004 1.87595 1.76806 1.38685 1.01012 1.22347 1.04787 1.00690 0.91841 1.19815 0.94868 0.95935 0.93669 1.22284 1.01979 0.97460 0.96558 1.23178 0.92699 0.97475 0.93214 1.67698 1.05371 1.13426 1.35535 1.23124 0.99378 0.92121 0.91921 1.22282 0.96708 1.02205 0.97455 0.92342 0.90555 0.91528 0.97501 0.99099 0.93629 0.88425 0.87454 0.83009 0.80155 0.80434 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.10 71.98 0.66 -3.53 16 2 C -0.03 -1.27 2.77 30.60 0.08 -1.19 16 3 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 4 C 0.03 1.47 3.76 29.85 0.11 1.58 16 5 C -0.60 -33.96 8.53 25.60 0.22 -33.74 16 6 H 0.05 3.07 7.60 -2.91 -0.02 3.05 16 7 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 8 N -0.94 -58.96 13.65 21.45 0.29 -58.67 16 9 Si 1.11 51.37 29.90 68.60 2.05 53.42 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 S -0.27 -10.16 20.44 -56.49 -1.15 -11.31 16 14 C -0.05 -1.27 5.81 71.24 0.41 -0.86 16 15 C -0.03 -0.83 5.18 -19.67 -0.10 -0.93 16 16 C -0.16 -3.54 9.82 22.36 0.22 -3.32 16 17 C 0.09 1.95 11.18 84.68 0.95 2.89 16 18 N -0.51 -12.61 10.36 -195.85 -2.03 -14.64 16 19 C 0.09 2.04 11.18 84.68 0.95 2.99 16 20 C -0.16 -3.89 9.82 22.36 0.22 -3.67 16 21 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.08 1.83 6.92 -2.39 -0.02 1.81 16 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.01 0.37 8.01 -2.39 -0.02 0.35 16 25 H -0.01 -0.52 8.00 -2.39 -0.02 -0.54 16 26 H 0.25 16.05 7.22 -92.71 -0.67 15.38 16 27 H 0.10 2.33 8.10 -2.39 -0.02 2.31 16 28 H 0.11 2.30 7.10 -2.39 -0.02 2.29 16 29 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 30 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -69.02 287.91 4.52 -64.49 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 1.19 Total: 8.30 kcal Atomic # 6 Polarization: -45.76 SS G_CDS: 4.18 Total: -41.59 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -1.74 Total: -73.31 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.05 Total: 53.42 kcal Atomic # 16 Polarization: -10.16 SS G_CDS: -1.15 Total: -11.31 kcal Total: -69.02 4.52 -64.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901631267.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.398 kcal (2) G-P(sol) polarization free energy of solvation -69.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds