Wall clock time and date at job start Sun Mar 29 2020 21:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 120.00085 * 2 1 4 4 H 1.48498 * 109.47109 * 269.99921 * 3 2 1 5 5 H 1.48498 * 109.47278 * 30.00351 * 3 2 1 6 6 H 1.48502 * 109.46821 * 150.00534 * 3 2 1 7 7 C 1.37876 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00510 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21283 * 119.99990 * 359.71991 * 12 11 10 14 14 C 1.50698 * 119.99538 * 179.72653 * 12 11 10 15 15 H 1.09003 * 115.52931 * 325.48437 * 14 12 11 16 16 C 1.52956 * 117.46227 * 110.93776 * 14 12 11 17 17 H 1.08999 * 119.08994 * 356.61548 * 16 14 12 18 18 C 1.51825 * 118.42647 * 201.33096 * 16 14 12 19 19 O 1.20756 * 127.57401 * 139.66602 * 18 16 14 20 20 C 1.52486 * 104.84845 * 319.71216 * 18 16 14 21 21 C 1.54909 * 102.93921 * 321.66548 * 20 18 16 22 22 C 1.53052 * 117.45879 * 179.97438 * 14 12 11 23 23 H 1.09003 * 119.43073 * 5.16303 * 22 14 12 24 24 H 0.97004 * 119.99239 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 26 26 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 30 30 H 1.08998 * 110.72016 * 203.30434 * 20 18 16 31 31 H 1.08997 * 110.71937 * 80.02678 * 20 18 16 32 32 H 1.09002 * 110.58682 * 279.28147 * 21 20 18 33 33 H 1.08998 * 110.58264 * 156.36515 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 7 5.4865 -2.6368 -0.0009 12 6 6.1602 -3.8040 -0.0065 13 8 5.5537 -4.8543 -0.0064 14 6 7.6672 -3.8040 -0.0127 15 1 8.1347 -2.9922 -0.5700 16 6 8.3778 -4.2921 1.2508 17 1 7.7820 -4.5664 2.1214 18 6 9.8156 -3.8633 1.4828 19 8 10.3257 -3.5305 2.5255 20 6 10.4738 -3.9440 0.1097 21 6 9.8373 -5.2151 -0.5059 22 6 8.3729 -5.1621 -0.0182 23 1 7.7805 -6.0732 -0.1030 24 1 -0.4849 0.8401 0.0004 25 1 3.8752 -0.6806 0.8888 26 1 3.8745 -0.6801 -0.8912 27 1 3.6577 -3.1507 -0.8908 28 1 3.6584 -3.1503 0.8892 29 1 5.9715 -1.7967 -0.0014 30 1 11.5532 -4.0610 0.2057 31 1 10.2317 -3.0641 -0.4864 32 1 10.3332 -6.1112 -0.1327 33 1 9.8809 -5.1767 -1.5943 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907320562.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:36 Heat of formation + Delta-G solvation = -55.739980 kcal Electronic energy + Delta-G solvation = -15999.907694 eV Core-core repulsion = 13219.173664 eV Total energy + Delta-G solvation = -2780.734030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.07205 -39.14093 -37.45565 -35.05806 -32.84989 -31.66334 -30.17024 -26.84602 -25.94869 -23.96114 -21.09327 -20.79346 -19.93275 -19.29655 -17.70603 -16.93227 -16.02659 -15.87294 -15.47916 -15.09119 -14.63330 -14.22531 -14.07789 -13.65147 -13.33329 -13.16018 -12.70290 -12.62868 -12.01229 -11.72485 -11.53653 -11.26668 -10.77429 -10.62077 -10.43852 -10.36591 -10.00309 -9.78612 -9.56846 -9.34688 -8.70202 -8.60751 -6.13927 -4.14452 1.37928 2.58160 3.15603 3.23092 3.31187 3.32171 3.51871 3.83226 4.12025 4.19980 4.35143 4.43781 4.63574 4.70674 4.91616 4.95798 5.08606 5.18983 5.39009 5.44538 5.56577 5.64699 5.80660 6.04599 6.13962 6.49882 6.64057 7.07282 7.13040 7.18132 7.62676 7.77974 8.37661 8.44337 8.90061 9.46007 10.99084 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039209 B = 0.004492 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.950500 B = 6231.249980 C = 6626.844400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.129 3.871 11 N -0.718 5.718 12 C 0.536 3.464 13 O -0.541 6.541 14 C -0.131 4.131 15 H 0.128 0.872 16 C -0.218 4.218 17 H 0.132 0.868 18 C 0.399 3.601 19 O -0.433 6.433 20 C -0.187 4.187 21 C -0.092 4.092 22 C -0.108 4.108 23 H 0.138 0.862 24 H 0.265 0.735 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.398 0.602 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.235 -6.586 -2.155 22.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.007 3.993 11 N -0.367 5.367 12 C 0.321 3.679 13 O -0.418 6.418 14 C -0.152 4.152 15 H 0.146 0.854 16 C -0.237 4.237 17 H 0.150 0.850 18 C 0.273 3.727 19 O -0.304 6.304 20 C -0.225 4.225 21 C -0.129 4.129 22 C -0.127 4.127 23 H 0.156 0.844 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.232 0.768 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 20.874 -7.041 -1.583 22.086 hybrid contribution 0.379 1.414 -0.014 1.464 sum 21.253 -5.627 -1.597 22.043 Atomic orbital electron populations 1.69908 1.06300 1.27095 1.50289 1.24999 0.94766 0.99154 0.94309 0.86752 0.80278 0.83536 0.78512 1.20193 1.21220 1.19091 1.20907 0.88593 0.94927 1.51839 0.90604 1.19802 0.98072 0.91223 0.96913 1.21570 0.75588 1.00341 1.01788 1.46256 1.09293 1.07718 1.73446 1.19316 0.87309 0.84365 0.76924 1.90705 1.69695 1.31410 1.50022 1.22175 0.93065 1.00392 0.99580 0.85449 1.23713 0.97820 1.07614 0.94587 0.85046 1.24362 0.88683 0.70291 0.89392 1.90433 1.72074 1.35365 1.32509 1.23137 1.02304 1.00828 0.96205 1.22010 0.91943 0.97202 1.01776 1.23211 0.96918 0.95360 0.97218 0.84426 0.92508 0.95935 0.96366 0.91728 0.91789 0.76836 0.88600 0.87248 0.89453 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 10 C 0.13 2.56 5.61 -4.04 -0.02 2.54 16 11 N -0.72 -11.24 5.56 -60.29 -0.33 -11.58 16 12 C 0.54 8.15 7.61 -10.99 -0.08 8.07 16 13 O -0.54 -10.26 16.33 5.55 0.09 -10.17 16 14 C -0.13 -1.37 5.48 -91.77 -0.50 -1.87 16 15 H 0.13 0.98 7.18 -51.93 -0.37 0.61 16 16 C -0.22 -2.28 6.66 -90.79 -0.60 -2.88 16 17 H 0.13 1.55 8.14 -51.93 -0.42 1.12 16 18 C 0.40 4.05 7.85 -27.59 -0.22 3.83 16 19 O -0.43 -5.93 17.99 6.00 0.11 -5.82 16 20 C -0.19 -1.19 6.33 -25.99 -0.16 -1.35 16 21 C -0.09 -0.55 6.81 -24.97 -0.17 -0.72 16 22 C -0.11 -0.98 6.56 -89.39 -0.59 -1.57 16 23 H 0.14 1.39 7.80 -51.93 -0.40 0.98 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 26 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 27 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.40 5.13 8.47 -40.82 -0.35 4.79 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.11 0.54 7.34 -51.93 -0.38 0.16 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 284.98 15.07 4.29 4.29 Total: -1.00 -33.22 284.98 -7.03 -40.24 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.39 Total: 0.79 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.90 Total: -7.56 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.44 Total: -37.95 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.20 Total: -15.99 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.22 -7.03 -40.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907320562.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.495 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds