Wall clock time and date at job start Sun Mar 29 2020 21:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 120.00085 * 2 1 4 4 H 1.48498 * 109.47109 * 269.99921 * 3 2 1 5 5 H 1.48498 * 109.47278 * 30.00351 * 3 2 1 6 6 H 1.48502 * 109.46821 * 150.00534 * 3 2 1 7 7 C 1.37876 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00510 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21283 * 119.99990 * 359.71991 * 12 11 10 14 14 C 1.50698 * 119.99538 * 179.72653 * 12 11 10 15 15 H 1.09003 * 115.52931 * 325.48437 * 14 12 11 16 16 C 1.52956 * 117.46227 * 110.93776 * 14 12 11 17 17 H 1.08999 * 119.08994 * 356.61548 * 16 14 12 18 18 C 1.51825 * 118.42647 * 201.33096 * 16 14 12 19 19 O 1.20756 * 127.57401 * 139.66602 * 18 16 14 20 20 C 1.52486 * 104.84845 * 319.71216 * 18 16 14 21 21 C 1.54909 * 102.93921 * 321.66548 * 20 18 16 22 22 C 1.53052 * 117.45879 * 179.97438 * 14 12 11 23 23 H 1.09003 * 119.43073 * 5.16303 * 22 14 12 24 24 H 0.97004 * 119.99239 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 26 26 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 30 30 H 1.08998 * 110.72016 * 203.30434 * 20 18 16 31 31 H 1.08997 * 110.71937 * 80.02678 * 20 18 16 32 32 H 1.09002 * 110.58682 * 279.28147 * 21 20 18 33 33 H 1.08998 * 110.58264 * 156.36515 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 7 5.4865 -2.6368 -0.0009 12 6 6.1602 -3.8040 -0.0065 13 8 5.5537 -4.8543 -0.0064 14 6 7.6672 -3.8040 -0.0127 15 1 8.1347 -2.9922 -0.5700 16 6 8.3778 -4.2921 1.2508 17 1 7.7820 -4.5664 2.1214 18 6 9.8156 -3.8633 1.4828 19 8 10.3257 -3.5305 2.5255 20 6 10.4738 -3.9440 0.1097 21 6 9.8373 -5.2151 -0.5059 22 6 8.3729 -5.1621 -0.0182 23 1 7.7805 -6.0732 -0.1030 24 1 -0.4849 0.8401 0.0004 25 1 3.8752 -0.6806 0.8888 26 1 3.8745 -0.6801 -0.8912 27 1 3.6577 -3.1507 -0.8908 28 1 3.6584 -3.1503 0.8892 29 1 5.9715 -1.7967 -0.0014 30 1 11.5532 -4.0610 0.2057 31 1 10.2317 -3.0641 -0.4864 32 1 10.3332 -6.1112 -0.1327 33 1 9.8809 -5.1767 -1.5943 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907320562.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:35 Heat of formation + Delta-G solvation = -79.558167 kcal Electronic energy + Delta-G solvation = -16000.940528 eV Core-core repulsion = 13219.173664 eV Total energy + Delta-G solvation = -2781.766864 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.93431 -40.29734 -38.38849 -36.64341 -34.81381 -32.56428 -31.75828 -27.53534 -27.45030 -25.25218 -22.70313 -21.96806 -20.78957 -20.14566 -19.05578 -18.68605 -16.97682 -16.77287 -16.67784 -16.33452 -16.21658 -15.64329 -15.23324 -14.83088 -14.60758 -14.33990 -14.20115 -13.38290 -13.29968 -13.06465 -12.57750 -12.30678 -12.23878 -12.18160 -11.77691 -11.58060 -11.53776 -11.41320 -10.93075 -10.79601 -10.44183 -10.10918 -8.31057 -6.38618 0.58519 1.38724 1.41685 1.47004 1.52637 2.04605 2.36186 2.66584 3.04237 3.04949 3.33644 3.49379 3.62459 3.91700 4.09914 4.15496 4.27512 4.33707 4.40140 4.53981 4.72689 4.72783 4.96757 5.05741 5.11174 5.15252 5.17987 5.38084 5.39916 5.62101 6.20630 6.38704 6.54228 6.69664 7.19814 7.26289 8.85806 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039209 B = 0.004492 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.950500 B = 6231.249980 C = 6626.844400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.238 1.238 7 C -0.541 4.541 8 H 0.028 0.972 9 C -0.013 4.013 10 C 0.143 3.857 11 N -0.709 5.709 12 C 0.533 3.467 13 O -0.585 6.585 14 C -0.124 4.124 15 H 0.168 0.832 16 C -0.234 4.234 17 H 0.106 0.894 18 C 0.402 3.598 19 O -0.477 6.477 20 C -0.175 4.175 21 C -0.081 4.081 22 C -0.097 4.097 23 H 0.123 0.877 24 H 0.268 0.732 25 H 0.035 0.965 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.416 0.584 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.099 0.901 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.869 -5.183 -3.464 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.781 3.219 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.161 1.161 7 C -0.579 4.579 8 H 0.047 0.953 9 C -0.051 4.051 10 C 0.020 3.980 11 N -0.360 5.360 12 C 0.320 3.680 13 O -0.465 6.465 14 C -0.145 4.145 15 H 0.186 0.814 16 C -0.254 4.254 17 H 0.124 0.876 18 C 0.279 3.721 19 O -0.351 6.351 20 C -0.212 4.212 21 C -0.118 4.118 22 C -0.116 4.116 23 H 0.141 0.859 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.253 0.747 30 H 0.131 0.869 31 H 0.153 0.847 32 H 0.117 0.883 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 24.547 -5.645 -2.905 25.355 hybrid contribution -0.870 0.833 0.417 1.274 sum 23.677 -4.813 -2.488 24.289 Atomic orbital electron populations 1.70082 1.08615 1.28455 1.51926 1.26083 0.95674 1.03875 0.93615 0.85538 0.79595 0.77304 0.79440 1.18703 1.21364 1.16108 1.21263 0.91635 0.93374 1.51666 0.95326 1.19658 0.94413 0.92874 0.98156 1.21064 0.78383 0.98528 1.00069 1.46007 1.07412 1.09102 1.73504 1.20122 0.89429 0.83226 0.75260 1.90689 1.71209 1.32940 1.51709 1.22098 0.89365 1.02894 1.00133 0.81432 1.23717 0.98363 1.09038 0.94258 0.87585 1.24828 0.88337 0.68505 0.90413 1.90421 1.72669 1.37513 1.34509 1.23193 1.02951 1.01909 0.93109 1.22089 0.88865 0.97586 1.03291 1.23358 0.98584 0.94002 0.95610 0.85894 0.92310 0.94674 0.94270 0.93332 0.94009 0.74724 0.86898 0.84741 0.88303 0.86824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 2 C 0.00 0.27 5.47 84.65 0.46 0.73 16 3 Si 0.96 41.93 27.47 68.60 1.88 43.81 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16 7 C -0.54 -30.71 9.66 25.60 0.25 -30.47 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 9 C -0.01 -0.58 4.16 29.85 0.12 -0.46 16 10 C 0.14 5.73 5.61 86.38 0.48 6.21 16 11 N -0.71 -21.19 5.56 -463.05 -2.57 -23.76 16 12 C 0.53 15.69 7.61 87.66 0.67 16.35 16 13 O -0.58 -22.58 16.33 -3.04 -0.05 -22.63 16 14 C -0.12 -2.27 5.48 -11.54 -0.06 -2.34 16 15 H 0.17 1.72 7.18 -2.39 -0.02 1.70 16 16 C -0.23 -4.59 6.66 -10.90 -0.07 -4.67 16 17 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 18 C 0.40 7.29 7.85 30.04 0.24 7.53 16 19 O -0.48 -12.64 17.99 -1.44 -0.03 -12.66 16 20 C -0.17 -1.41 6.33 31.08 0.20 -1.21 16 21 C -0.08 -0.60 6.81 31.74 0.22 -0.39 16 22 C -0.10 -1.53 6.56 -9.99 -0.07 -1.59 16 23 H 0.12 2.36 7.80 -2.39 -0.02 2.34 16 24 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 25 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 26 H 0.04 1.57 7.57 -2.38 -0.02 1.55 16 27 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.42 9.43 8.47 -92.71 -0.79 8.65 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.13 0.51 7.34 -2.39 -0.02 0.50 16 32 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -76.58 284.98 2.25 -74.33 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.28 Total: 10.05 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 2.43 Total: -10.29 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -2.27 Total: -82.61 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.08 Total: -35.29 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.81 kcal Total: -76.58 2.25 -74.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907320562.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.230 kcal (2) G-P(sol) polarization free energy of solvation -76.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds