Wall clock time and date at job start Sun Mar 29 2020 22:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34440 * 125.45627 * 2 1 4 4 C 1.46741 * 106.37782 * 179.97438 * 3 2 1 5 5 C 1.47103 * 127.02652 * 179.97438 * 4 3 2 6 6 O 1.21549 * 119.99918 * 180.02562 * 5 4 3 7 7 O 1.34788 * 120.00130 * 0.02901 * 5 4 3 8 8 C 1.45200 * 116.99930 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46683 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46839 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99976 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99778 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00291 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99938 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47077 * 59.99769 * 14 12 10 16 16 H 1.48497 * 109.47094 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46808 * 299.99900 * 14 12 10 18 18 C 1.37848 * 105.94799 * 0.02562 * 4 3 2 19 19 C 1.50703 * 125.89415 * 179.97438 * 18 4 3 20 20 N 1.34626 * 108.20636 * 0.26227 * 18 4 3 21 21 H 0.97000 * 124.80625 * 179.71920 * 20 18 4 22 22 H 1.09002 * 109.47090 * 90.02505 * 1 2 3 23 23 H 1.09002 * 109.46952 * 210.02096 * 1 2 3 24 24 H 1.09001 * 109.47321 * 330.02512 * 1 2 3 25 25 H 1.08000 * 126.81182 * 359.97438 * 3 2 1 26 26 H 1.08995 * 109.46919 * 299.99507 * 8 7 5 27 27 H 1.08995 * 109.47494 * 59.99901 * 8 7 5 28 28 H 1.08995 * 109.47164 * 299.99508 * 9 8 7 29 29 H 1.08995 * 109.47113 * 59.99818 * 9 8 7 30 30 H 0.96994 * 119.99799 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47152 * 89.99938 * 19 18 4 32 32 H 1.09001 * 109.46980 * 330.00038 * 19 18 4 33 33 H 1.09004 * 109.47113 * 210.00019 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2868 1.0951 0.0000 4 6 3.6736 0.6154 0.0006 5 6 4.8947 1.4358 0.0003 6 8 5.9862 0.9009 0.0005 7 8 4.8031 2.7806 0.0000 8 6 6.0491 3.5261 -0.0009 9 6 5.7460 5.0258 -0.0018 10 6 7.0392 5.7996 -0.0020 11 1 7.9828 5.2742 -0.0012 12 6 7.0176 7.1782 -0.0023 13 7 5.8685 7.8179 -0.0029 14 14 8.6206 8.1374 -0.0019 15 1 9.4053 7.7906 -1.2141 16 1 8.3264 9.5929 -0.0029 17 1 9.4043 7.7911 1.2110 18 6 3.5984 -0.7610 0.0004 19 6 4.7691 -1.7099 0.0003 20 7 2.2984 -1.1111 -0.0062 21 1 1.9710 -2.0242 -0.0117 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3634 0.8902 0.5134 25 1 1.9579 2.1238 -0.0004 26 1 6.6251 3.2720 0.8889 27 1 6.6243 3.2715 -0.8910 28 1 5.1703 5.2795 -0.8918 29 1 5.1707 5.2807 0.8881 30 1 5.8534 8.7877 -0.0035 31 1 5.0513 -1.9388 1.0279 32 1 5.6118 -1.2471 -0.5134 33 1 4.4910 -2.6300 -0.5138 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914968114.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:50 Heat of formation + Delta-G solvation = -65.871651 kcal Electronic energy + Delta-G solvation = -16010.017660 eV Core-core repulsion = 13228.844288 eV Total energy + Delta-G solvation = -2781.173372 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.29890 -39.21984 -35.79040 -33.24719 -32.70773 -31.27370 -30.03097 -29.27255 -25.59445 -24.54533 -22.61889 -20.75792 -20.40076 -19.23694 -17.24650 -16.40031 -15.74149 -15.71186 -15.31893 -14.90268 -14.42164 -13.75618 -13.41694 -13.38946 -12.95534 -12.72640 -12.52905 -12.29567 -12.27121 -12.20970 -11.53236 -11.10908 -10.93804 -10.62102 -10.60577 -10.01357 -9.49695 -9.48285 -9.22287 -8.84435 -8.36596 -8.05255 -6.03110 -4.06977 1.68156 2.35075 2.93484 3.35069 3.38423 3.40960 3.64324 3.65156 4.46102 4.70058 4.78817 4.97891 5.13776 5.33190 5.35396 5.44589 5.50791 5.59291 5.69387 5.89678 5.96243 6.19161 6.24465 6.32060 6.75194 6.78011 6.90804 7.22900 7.34649 7.66863 7.73736 7.96449 8.31292 8.54336 8.98573 9.56780 11.08481 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.041735 B = 0.004473 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.734008 B = 6258.614701 C = 6898.296213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.004 4.004 3 C -0.136 4.136 4 C -0.216 4.216 5 C 0.533 3.467 6 O -0.532 6.532 7 O -0.352 6.352 8 C 0.077 3.923 9 C 0.025 3.975 10 C -0.525 4.525 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.106 3.894 19 C -0.095 4.095 20 N -0.547 5.547 21 H 0.414 0.586 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.153 0.847 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.263 0.737 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.274 -18.730 -0.015 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C -0.159 4.159 4 C -0.224 4.224 5 C 0.380 3.620 6 O -0.425 6.425 7 O -0.268 6.268 8 C 0.004 3.996 9 C -0.012 4.012 10 C -0.563 4.563 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.529 5.529 14 Si 0.727 3.273 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.012 4.012 19 C -0.152 4.152 20 N -0.143 5.143 21 H 0.250 0.750 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.171 0.829 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.102 -18.735 -0.017 21.285 hybrid contribution 0.792 0.223 0.011 0.823 sum -9.309 -18.512 -0.007 20.721 Atomic orbital electron populations 1.20307 0.87655 1.03284 1.02664 1.20213 0.93551 0.85820 1.11641 1.21977 0.90399 0.98279 1.05288 1.19574 0.92083 0.91003 1.19716 1.20076 0.87662 0.81906 0.72405 1.90742 1.29443 1.73974 1.48301 1.86593 1.39333 1.17822 1.83012 1.23571 0.81726 0.93547 1.00751 1.19152 0.97952 0.85318 0.98818 1.20969 0.92103 0.91263 1.52001 0.92329 1.24978 0.96535 0.97668 0.94962 1.69970 1.24726 1.08321 1.49928 0.86544 0.83404 0.78647 0.78751 1.20100 1.21170 1.20095 1.20517 0.84976 0.93835 1.01843 1.20588 0.94681 0.96344 1.03583 1.41433 1.05176 1.08779 1.58954 0.74977 0.91072 0.91971 0.89829 0.82907 0.92492 0.92498 0.95386 0.95391 0.92736 0.90278 0.87968 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.41 36.00 0.37 -0.21 16 2 C 0.00 -0.05 7.11 -81.89 -0.58 -0.63 16 3 C -0.14 -1.97 10.89 -37.49 -0.41 -2.37 16 4 C -0.22 -3.58 6.33 -103.01 -0.65 -4.23 16 5 C 0.53 10.78 7.95 34.33 0.27 11.05 16 6 O -0.53 -11.35 14.67 -19.30 -0.28 -11.63 16 7 O -0.35 -7.84 10.12 -40.73 -0.41 -8.26 16 8 C 0.08 1.83 5.42 37.16 0.20 2.03 16 9 C 0.02 0.68 5.35 -27.88 -0.15 0.53 16 10 C -0.53 -15.23 9.11 -34.44 -0.31 -15.54 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 14 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.11 1.37 7.22 -81.51 -0.59 0.78 16 19 C -0.09 -1.01 9.90 36.01 0.36 -0.65 16 20 N -0.55 -5.39 5.89 -5.20 -0.03 -5.42 16 21 H 0.41 2.47 8.96 -40.82 -0.37 2.10 16 22 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.33 6.51 -51.93 -0.34 1.00 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 292.82 15.07 4.41 4.41 Total: -1.00 -33.69 292.82 -6.66 -40.34 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.47 Total: -2.46 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.59 Total: -7.59 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.71 Total: -31.64 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.70 Total: -19.89 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.69 -6.66 -40.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914968114.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.529 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds