Wall clock time and date at job start Sun Mar 29 2020 21:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 119.99674 * 2 1 4 4 H 1.48497 * 109.47298 * 270.00248 * 3 2 1 5 5 H 1.48501 * 109.47186 * 30.00505 * 3 2 1 6 6 H 1.48503 * 109.46973 * 150.00156 * 3 2 1 7 7 C 1.38947 * 120.00748 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00511 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99659 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00154 * 180.27604 * 9 7 2 11 11 O 1.21298 * 120.00075 * 354.86010 * 10 9 7 12 12 C 1.50699 * 120.00032 * 174.85165 * 10 9 7 13 13 C 1.53093 * 119.79736 * 270.02787 * 12 10 9 14 14 C 1.54732 * 122.39987 * 197.75908 * 12 10 9 15 15 H 1.09000 * 122.22798 * 359.48179 * 14 12 10 16 16 C 1.54468 * 104.06437 * 223.50363 * 14 12 10 17 17 O 1.44610 * 105.15219 * 336.96437 * 16 14 12 18 18 C 1.43332 * 105.22199 * 38.93895 * 17 16 14 19 19 C 1.52806 * 115.73595 * 90.08245 * 18 17 16 20 20 C 1.53962 * 86.77565 * 92.98258 * 19 18 17 21 21 C 1.52761 * 115.79950 * 191.16416 * 18 17 16 22 22 H 0.96997 * 119.99815 * 359.97438 * 1 2 3 23 23 H 0.97005 * 119.99598 * 0.02562 * 9 7 2 24 24 H 1.08994 * 117.42668 * 355.38645 * 13 12 10 25 25 H 1.09004 * 117.42406 * 139.98321 * 13 12 10 26 26 H 1.08996 * 110.30581 * 218.04421 * 16 14 12 27 27 H 1.08997 * 110.38723 * 95.92140 * 16 14 12 28 28 H 1.08996 * 113.66617 * 207.45477 * 19 18 17 29 29 H 1.09001 * 113.66229 * 338.51738 * 19 18 17 30 30 H 1.08990 * 113.58971 * 270.09816 * 20 19 18 31 31 H 1.09004 * 113.65556 * 139.29403 * 20 19 18 32 32 H 1.09002 * 113.66448 * 21.54238 * 21 18 17 33 33 H 1.09004 * 113.66536 * 152.50615 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0090 -1.2032 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 0.0046 11 8 3.2072 -3.5600 -0.0850 12 6 1.2482 -4.8600 0.1217 13 6 0.9676 -5.4546 1.5042 14 6 1.9410 -6.1811 0.5327 15 1 3.0078 -6.2350 0.7496 16 6 1.3595 -7.2289 -0.4421 17 8 0.0984 -6.6757 -0.8834 18 6 0.3395 -5.2722 -1.0463 19 6 0.8135 -4.8368 -2.4322 20 6 -0.6686 -4.5857 -2.7648 21 6 -0.9004 -4.4043 -1.2535 22 1 -0.4850 0.8400 0.0004 23 1 0.3536 -2.3906 -0.0005 24 1 1.3941 -4.9427 2.3668 25 1 -0.0091 -5.9109 1.6657 26 1 1.1977 -8.1758 0.0729 27 1 2.0284 -7.3700 -1.2910 28 1 1.4194 -3.9308 -2.4227 29 1 1.2620 -5.6420 -3.0141 30 1 -1.1754 -5.4555 -3.1824 31 1 -0.8391 -3.6782 -3.3441 32 1 -1.8212 -4.8638 -0.8940 33 1 -0.7776 -3.3769 -0.9108 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931298464.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:07 Heat of formation + Delta-G solvation = -22.385248 kcal Electronic energy + Delta-G solvation = -17592.238552 eV Core-core repulsion = 14812.950892 eV Total energy + Delta-G solvation = -2779.287660 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.97683 -37.70940 -36.39544 -34.11591 -33.69932 -31.20515 -27.57176 -25.81889 -25.20879 -24.64285 -21.96813 -20.83893 -19.24239 -18.67983 -17.71476 -16.59452 -15.62084 -15.06116 -14.94123 -14.73787 -14.09378 -13.86394 -13.57769 -13.09977 -12.50358 -12.45466 -12.08026 -11.92577 -11.59913 -11.29293 -11.12394 -10.79680 -10.54143 -10.38647 -10.34986 -10.25505 -10.03232 -9.59243 -9.40292 -9.09722 -8.42322 -8.02700 -6.47121 -3.88075 3.13663 3.23733 3.29072 3.59901 3.82515 3.89344 4.14896 4.67766 4.79650 4.86872 4.99248 5.12862 5.15396 5.24798 5.45708 5.48747 5.56004 5.74325 5.78098 5.93179 5.98843 6.07779 6.19578 6.25332 6.27133 6.35911 6.46240 6.55025 6.62250 7.15584 7.50098 8.00440 8.54733 9.11270 9.49005 9.99725 10.70250 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033277 B = 0.008190 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.229902 B = 3418.135189 C = 3810.510002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.103 0.897 9 N -0.551 5.551 10 C 0.485 3.515 11 O -0.592 6.592 12 C -0.167 4.167 13 C -0.115 4.115 14 C -0.181 4.181 15 H 0.127 0.873 16 C 0.076 3.924 17 O -0.350 6.350 18 C 0.119 3.881 19 C -0.147 4.147 20 C -0.135 4.135 21 C -0.126 4.126 22 H 0.273 0.727 23 H 0.393 0.607 24 H 0.106 0.894 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.671 -9.582 -1.276 10.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.433 4.433 8 H 0.121 0.879 9 N -0.187 5.187 10 C 0.271 3.729 11 O -0.477 6.477 12 C -0.171 4.171 13 C -0.152 4.152 14 C -0.199 4.199 15 H 0.145 0.855 16 C -0.001 4.001 17 O -0.269 6.269 18 C 0.079 3.921 19 C -0.184 4.184 20 C -0.172 4.172 21 C -0.163 4.163 22 H 0.083 0.917 23 H 0.229 0.771 24 H 0.124 0.876 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.207 -9.504 -1.378 9.854 hybrid contribution 0.120 0.952 0.051 0.961 sum -2.087 -8.552 -1.327 8.902 Atomic orbital electron populations 1.69608 1.05921 1.28347 1.49859 1.25272 0.95648 0.99735 0.97036 0.85855 0.79251 0.80716 0.78466 1.20316 1.20828 1.19405 1.19742 0.93406 0.82178 1.48019 0.87880 1.41936 1.09329 1.04258 1.63146 1.18366 0.87017 0.83092 0.84458 1.90520 1.13971 1.86883 1.56360 1.22911 1.02601 0.95167 0.96430 1.23214 0.99799 1.00325 0.91871 1.24390 0.99827 0.93278 1.02441 0.85501 1.22909 0.85487 0.96203 0.95467 1.88912 1.31010 1.19391 1.87586 1.22061 0.95603 0.81863 0.92573 1.23247 0.97346 1.02402 0.95443 1.22826 0.96185 1.01751 0.96446 1.22966 0.96781 1.00110 0.96450 0.91700 0.77111 0.87588 0.88364 0.88898 0.91458 0.88400 0.91220 0.90252 0.90965 0.90618 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.94 13.05 55.50 0.72 -23.21 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 2.99 7.17 -52.49 -0.38 2.61 16 9 N -0.55 -14.02 5.23 -10.96 -0.06 -14.08 16 10 C 0.49 11.80 5.99 -10.99 -0.07 11.73 16 11 O -0.59 -16.43 16.50 5.54 0.09 -16.34 16 12 C -0.17 -3.25 2.27 -154.38 -0.35 -3.60 16 13 C -0.11 -1.91 9.86 -25.33 -0.25 -2.16 16 14 C -0.18 -3.00 7.09 -87.59 -0.62 -3.62 16 15 H 0.13 2.13 8.14 -51.93 -0.42 1.70 16 16 C 0.08 1.09 7.54 37.93 0.29 1.37 16 17 O -0.35 -5.77 11.18 -35.23 -0.39 -6.16 16 18 C 0.12 2.10 0.94 -90.53 -0.08 2.01 16 19 C -0.15 -2.56 7.44 -26.33 -0.20 -2.76 16 20 C -0.13 -2.08 8.09 -25.74 -0.21 -2.29 16 21 C -0.13 -2.11 7.61 -26.35 -0.20 -2.31 16 22 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 23 H 0.39 9.65 5.51 -40.82 -0.22 9.43 16 24 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 25 H 0.10 1.47 8.12 -51.93 -0.42 1.05 16 26 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 1.98 7.03 -51.93 -0.37 1.62 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.10 1.94 5.68 -51.93 -0.29 1.65 16 LS Contribution 275.78 15.07 4.16 4.16 Total: -1.00 -30.13 275.78 -6.63 -36.77 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -4.20 Total: 12.71 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -1.93 Total: -9.60 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.67 Total: -37.30 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.30 Total: -22.50 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.13 -6.63 -36.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298464.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.381 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds