Wall clock time and date at job start Sun Mar 29 2020 21:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 119.99674 * 2 1 4 4 H 1.48497 * 109.47298 * 270.00248 * 3 2 1 5 5 H 1.48501 * 109.47186 * 30.00505 * 3 2 1 6 6 H 1.48503 * 109.46973 * 150.00156 * 3 2 1 7 7 C 1.38947 * 120.00748 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00511 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99659 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00154 * 180.27604 * 9 7 2 11 11 O 1.21298 * 120.00075 * 354.86010 * 10 9 7 12 12 C 1.50699 * 120.00032 * 174.85165 * 10 9 7 13 13 C 1.53093 * 119.79736 * 270.02787 * 12 10 9 14 14 C 1.54732 * 122.39987 * 197.75908 * 12 10 9 15 15 H 1.09000 * 122.22798 * 359.48179 * 14 12 10 16 16 C 1.54468 * 104.06437 * 223.50363 * 14 12 10 17 17 O 1.44610 * 105.15219 * 336.96437 * 16 14 12 18 18 C 1.43332 * 105.22199 * 38.93895 * 17 16 14 19 19 C 1.52806 * 115.73595 * 90.08245 * 18 17 16 20 20 C 1.53962 * 86.77565 * 92.98258 * 19 18 17 21 21 C 1.52761 * 115.79950 * 191.16416 * 18 17 16 22 22 H 0.96997 * 119.99815 * 359.97438 * 1 2 3 23 23 H 0.97005 * 119.99598 * 0.02562 * 9 7 2 24 24 H 1.08994 * 117.42668 * 355.38645 * 13 12 10 25 25 H 1.09004 * 117.42406 * 139.98321 * 13 12 10 26 26 H 1.08996 * 110.30581 * 218.04421 * 16 14 12 27 27 H 1.08997 * 110.38723 * 95.92140 * 16 14 12 28 28 H 1.08996 * 113.66617 * 207.45477 * 19 18 17 29 29 H 1.09001 * 113.66229 * 338.51738 * 19 18 17 30 30 H 1.08990 * 113.58971 * 270.09816 * 20 19 18 31 31 H 1.09004 * 113.65556 * 139.29403 * 20 19 18 32 32 H 1.09002 * 113.66448 * 21.54238 * 21 18 17 33 33 H 1.09004 * 113.66536 * 152.50615 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0090 -1.2032 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 0.0046 11 8 3.2072 -3.5600 -0.0850 12 6 1.2482 -4.8600 0.1217 13 6 0.9676 -5.4546 1.5042 14 6 1.9410 -6.1811 0.5327 15 1 3.0078 -6.2350 0.7496 16 6 1.3595 -7.2289 -0.4421 17 8 0.0984 -6.6757 -0.8834 18 6 0.3395 -5.2722 -1.0463 19 6 0.8135 -4.8368 -2.4322 20 6 -0.6686 -4.5857 -2.7648 21 6 -0.9004 -4.4043 -1.2535 22 1 -0.4850 0.8400 0.0004 23 1 0.3536 -2.3906 -0.0005 24 1 1.3941 -4.9427 2.3668 25 1 -0.0091 -5.9109 1.6657 26 1 1.1977 -8.1758 0.0729 27 1 2.0284 -7.3700 -1.2910 28 1 1.4194 -3.9308 -2.4227 29 1 1.2620 -5.6420 -3.0141 30 1 -1.1754 -5.4555 -3.1824 31 1 -0.8391 -3.6782 -3.3441 32 1 -1.8212 -4.8638 -0.8940 33 1 -0.7776 -3.3769 -0.9108 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298464.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:07 Heat of formation + Delta-G solvation = -42.363688 kcal Electronic energy + Delta-G solvation = -17593.104882 eV Core-core repulsion = 14812.950892 eV Total energy + Delta-G solvation = -2780.153991 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.37653 -39.59752 -37.72637 -36.02930 -35.21807 -33.25266 -28.89551 -27.45076 -26.78654 -26.06519 -23.65104 -22.15334 -20.74721 -20.42532 -19.54954 -18.18374 -16.96758 -16.86353 -16.41463 -16.20021 -15.87939 -15.43447 -15.20050 -14.77223 -14.02261 -13.81629 -13.62569 -13.37354 -13.33313 -12.95949 -12.65481 -12.46507 -12.16721 -12.11095 -11.78711 -11.63122 -11.59061 -11.40831 -10.79202 -10.45543 -10.31542 -10.07912 -8.51354 -6.01160 1.34114 1.39612 1.52214 1.88733 2.22277 2.35942 2.56906 3.12107 3.16464 3.34370 3.52221 3.67218 3.82159 3.87684 4.05102 4.09971 4.20713 4.37400 4.58377 4.66990 4.72962 4.76115 4.81203 4.86184 4.96321 5.01189 5.07046 5.20100 5.31461 5.36542 5.84008 5.94149 6.51803 7.04865 7.48445 8.02257 8.65768 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033277 B = 0.008190 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.229902 B = 3418.135189 C = 3810.510002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.007 4.007 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.341 4.341 8 H 0.079 0.921 9 N -0.556 5.556 10 C 0.485 3.515 11 O -0.636 6.636 12 C -0.201 4.201 13 C -0.101 4.101 14 C -0.167 4.167 15 H 0.121 0.879 16 C 0.077 3.923 17 O -0.347 6.347 18 C 0.127 3.873 19 C -0.154 4.154 20 C -0.120 4.120 21 C -0.128 4.128 22 H 0.280 0.720 23 H 0.396 0.604 24 H 0.101 0.899 25 H 0.123 0.877 26 H 0.132 0.868 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 -10.749 -1.338 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.208 4.208 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.471 4.471 8 H 0.097 0.903 9 N -0.192 5.192 10 C 0.273 3.727 11 O -0.525 6.525 12 C -0.204 4.204 13 C -0.138 4.138 14 C -0.186 4.186 15 H 0.139 0.861 16 C 0.001 3.999 17 O -0.265 6.265 18 C 0.087 3.913 19 C -0.192 4.192 20 C -0.158 4.158 21 C -0.165 4.165 22 H 0.090 0.910 23 H 0.233 0.767 24 H 0.119 0.881 25 H 0.141 0.859 26 H 0.150 0.850 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.347 -10.682 -1.439 11.286 hybrid contribution 0.507 1.277 0.087 1.376 sum -2.840 -9.406 -1.352 9.918 Atomic orbital electron populations 1.69668 1.06806 1.29570 1.49244 1.26061 0.96572 1.02373 0.95810 0.84926 0.77918 0.76729 0.78750 1.19552 1.19216 1.19779 1.19711 0.92724 0.83920 1.50695 0.90322 1.41983 1.09393 1.04342 1.63467 1.19151 0.86762 0.84430 0.82379 1.90471 1.16133 1.87889 1.57961 1.22804 1.04736 0.93709 0.99173 1.23319 1.01019 0.99197 0.90231 1.24604 0.99848 0.92181 1.01974 0.86078 1.23147 0.84780 0.96620 0.95372 1.88912 1.31891 1.18128 1.87603 1.21922 0.95275 0.82734 0.91394 1.23201 0.98383 1.01219 0.96408 1.22815 0.94475 1.02824 0.95643 1.22910 0.97417 0.98686 0.97513 0.91011 0.76738 0.88088 0.85881 0.85040 0.90585 0.92235 0.89801 0.87607 0.91015 0.88658 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.99 13.05 21.66 0.28 -48.71 16 2 C -0.01 -0.39 5.50 84.93 0.47 0.07 16 3 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.34 -19.64 9.68 84.04 0.81 -18.83 16 8 H 0.08 4.82 7.17 -2.91 -0.02 4.80 16 9 N -0.56 -29.49 5.23 -306.99 -1.61 -31.09 16 10 C 0.49 24.46 5.99 87.66 0.53 24.99 16 11 O -0.64 -36.94 16.50 -3.08 -0.05 -36.99 16 12 C -0.20 -7.73 2.27 -52.10 -0.12 -7.85 16 13 C -0.10 -3.19 9.86 31.50 0.31 -2.88 16 14 C -0.17 -5.27 7.09 -8.83 -0.06 -5.34 16 15 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 16 C 0.08 1.93 7.54 72.48 0.55 2.48 16 17 O -0.35 -10.24 11.18 -148.98 -1.66 -11.91 16 18 C 0.13 4.31 0.94 -10.74 -0.01 4.30 16 19 C -0.15 -5.33 7.44 30.85 0.23 -5.10 16 20 C -0.12 -3.53 8.09 31.24 0.25 -3.28 16 21 C -0.13 -4.15 7.61 30.84 0.23 -3.92 16 22 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 23 H 0.40 20.20 5.51 -92.70 -0.51 19.69 16 24 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 25 H 0.12 3.29 8.12 -2.38 -0.02 3.28 16 26 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 2.51 7.03 -2.39 -0.02 2.49 16 29 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.08 2.93 5.68 -2.39 -0.01 2.92 16 Total: -1.00 -66.24 275.78 2.79 -63.45 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.61 Total: 35.77 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 3.19 Total: -15.34 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -1.32 Total: -79.80 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -1.72 Total: -48.90 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -66.24 2.79 -63.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298464.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.087 kcal (2) G-P(sol) polarization free energy of solvation -66.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds