Wall clock time and date at job start Sun Mar 29 2020 22:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00038 * 2 1 4 4 H 1.48498 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46710 * 299.99659 * 3 2 1 6 6 H 1.48497 * 109.46848 * 59.99299 * 3 2 1 7 7 C 1.37876 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00319 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99897 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46802 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99697 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99953 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99842 * 179.97438 * 11 10 9 14 14 H 1.09002 * 110.66582 * 59.29865 * 13 11 10 15 15 C 1.54997 * 110.74845 * 296.08080 * 13 11 10 16 16 C 1.55825 * 102.78890 * 241.49069 * 15 13 11 17 17 H 1.08999 * 115.38476 * 158.11338 * 16 15 13 18 18 O 1.46532 * 101.24178 * 32.42384 * 16 15 13 19 19 C 1.46778 * 99.83258 * 305.92420 * 18 16 15 20 20 H 1.09001 * 116.43975 * 179.80675 * 19 18 16 21 21 C 1.58722 * 100.81925 * 306.53034 * 19 18 16 22 22 H 1.08996 * 118.99267 * 171.84887 * 21 19 18 23 23 C 1.53004 * 116.91291 * 329.77732 * 21 19 18 24 24 C 1.52997 * 60.86444 * 89.30165 * 23 21 19 25 25 H 1.09001 * 120.88201 * 112.81250 * 24 23 21 26 26 H 0.96997 * 119.99997 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47067 * 59.99853 * 9 7 2 28 28 H 1.08998 * 109.46625 * 299.99575 * 9 7 2 29 29 H 0.96994 * 120.00294 * 359.97438 * 10 9 7 30 30 H 1.08999 * 110.75371 * 359.81858 * 15 13 11 31 31 H 1.09009 * 110.74822 * 123.16893 * 15 13 11 32 32 H 1.09001 * 117.40835 * 341.56286 * 23 21 19 33 33 H 1.09006 * 117.40761 * 197.04257 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5614 -5.1050 0.0020 13 6 2.7331 -6.0288 0.0005 14 1 3.3796 -5.9826 0.8769 15 6 3.5733 -6.0322 -1.3020 16 6 3.2034 -7.4013 -1.9475 17 1 3.3720 -7.4721 -3.0221 18 8 1.8131 -7.5565 -1.5113 19 6 1.9854 -7.3944 -0.0627 20 1 1.0822 -7.4611 0.5439 21 6 3.1074 -8.4790 0.2271 22 1 3.5617 -8.5176 1.2171 23 6 3.1298 -9.7115 -0.6793 24 6 3.9331 -8.4741 -1.0846 25 1 5.0227 -8.4958 -1.1032 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 3.1567 -3.4354 0.0002 30 1 3.2815 -5.2074 -1.9521 31 1 4.6385 -5.9878 -1.0746 32 1 2.2268 -9.9322 -1.2485 33 1 3.6882 -10.5804 -0.3309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935694911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:02 Heat of formation + Delta-G solvation = -37.760994 kcal Electronic energy + Delta-G solvation = -16796.532078 eV Core-core repulsion = 14016.577676 eV Total energy + Delta-G solvation = -2779.954403 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.39282 -38.41374 -34.36971 -34.14836 -32.54437 -31.73837 -29.31430 -27.28054 -24.30427 -23.01069 -21.89923 -20.48107 -20.11870 -19.32124 -17.33256 -16.73288 -16.28929 -15.62103 -15.03036 -14.52863 -14.24486 -14.12458 -13.63085 -12.84400 -12.53221 -12.48743 -12.06440 -11.94270 -11.55440 -11.42787 -11.25488 -11.10973 -10.95263 -10.88513 -10.32342 -10.28542 -9.94838 -9.76883 -9.37664 -8.94453 -8.73790 -7.86910 -6.16597 -4.23584 3.23135 3.30015 3.33056 3.36000 3.42977 3.65440 4.14567 4.35233 4.48613 4.53499 4.58867 4.73398 4.84611 5.02612 5.17683 5.19522 5.26965 5.43604 5.58400 5.63020 5.67346 5.79705 5.86824 5.99820 6.10328 6.14710 6.54388 7.31840 7.45153 7.52763 7.66850 7.97364 8.63653 8.78537 9.11687 9.43255 10.93705 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.058901 B = 0.005025 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.258807 B = 5571.041334 C = 5785.408666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.712 5.712 11 C 0.508 3.492 12 O -0.550 6.550 13 C -0.137 4.137 14 H 0.104 0.896 15 C -0.133 4.133 16 C 0.088 3.912 17 H 0.130 0.870 18 O -0.361 6.361 19 C 0.120 3.880 20 H 0.141 0.859 21 C -0.198 4.198 22 H 0.122 0.878 23 C -0.136 4.136 24 C -0.198 4.198 25 H 0.121 0.879 26 H 0.265 0.735 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.390 0.610 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.590 -15.318 -0.925 18.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.360 5.360 11 C 0.292 3.708 12 O -0.428 6.428 13 C -0.159 4.159 14 H 0.122 0.878 15 C -0.171 4.171 16 C 0.030 3.970 17 H 0.148 0.852 18 O -0.280 6.280 19 C 0.062 3.938 20 H 0.159 0.841 21 C -0.216 4.216 22 H 0.140 0.860 23 C -0.173 4.173 24 C -0.216 4.216 25 H 0.139 0.861 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.222 0.778 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.339 -15.328 -1.060 17.981 hybrid contribution 1.217 1.165 0.226 1.700 sum 10.556 -14.164 -0.834 17.684 Atomic orbital electron populations 1.69986 1.06118 1.27189 1.48969 1.24957 0.94903 0.99456 0.94711 0.86365 0.79808 0.82989 0.77764 1.19650 1.20781 1.20793 1.21262 0.93260 0.90456 1.53108 0.91888 1.19112 0.88339 0.81987 0.97740 1.46436 1.11020 1.06063 1.72469 1.20126 0.89100 0.84115 0.77422 1.90663 1.16741 1.84813 1.50603 1.22960 0.97730 0.95124 1.00101 0.87796 1.23164 0.99927 0.98262 0.95778 1.24194 0.81484 0.92430 0.98875 0.85245 1.90175 1.24988 1.92628 1.20173 1.24596 0.96429 0.89891 0.82858 0.84135 1.24908 1.01332 0.99837 0.95514 0.85967 1.22789 1.02029 0.91055 1.01421 1.24303 0.98510 0.99835 0.98934 0.86076 0.92493 0.95549 0.95559 0.77805 0.89696 0.89820 0.88217 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 9 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 10 N -0.71 -15.16 5.53 -61.47 -0.34 -15.50 16 11 C 0.51 10.37 6.99 -10.98 -0.08 10.29 16 12 O -0.55 -13.64 15.90 5.56 0.09 -13.56 16 13 C -0.14 -2.02 2.87 -89.21 -0.26 -2.27 16 14 H 0.10 1.28 8.03 -51.93 -0.42 0.86 16 15 C -0.13 -1.67 6.14 -24.17 -0.15 -1.82 16 16 C 0.09 1.07 5.61 -23.72 -0.13 0.94 16 17 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 18 O -0.36 -5.85 10.81 -35.23 -0.38 -6.23 16 19 C 0.12 1.75 4.73 -22.05 -0.10 1.65 16 20 H 0.14 2.17 7.76 -51.93 -0.40 1.77 16 21 C -0.20 -2.15 6.73 -86.39 -0.58 -2.73 16 22 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 23 C -0.14 -1.35 9.81 -26.73 -0.26 -1.61 16 24 C -0.20 -1.98 6.62 -88.06 -0.58 -2.57 16 25 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.39 7.10 8.32 -40.82 -0.34 6.76 16 30 H 0.08 1.20 7.76 -51.93 -0.40 0.80 16 31 H 0.08 0.81 8.02 -51.92 -0.42 0.40 16 32 H 0.10 1.11 7.67 -51.93 -0.40 0.71 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 278.37 15.07 4.19 4.19 Total: -1.00 -32.97 278.37 -7.76 -40.73 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.45 Total: 4.95 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.59 Total: -4.90 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.40 Total: -41.04 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.29 Total: -19.79 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.97 -7.76 -40.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.973 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds