Wall clock time and date at job start Sun Mar 29 2020 22:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00038 * 2 1 4 4 H 1.48498 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46710 * 299.99659 * 3 2 1 6 6 H 1.48497 * 109.46848 * 59.99299 * 3 2 1 7 7 C 1.37876 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00319 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99897 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46802 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99697 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99953 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99842 * 179.97438 * 11 10 9 14 14 H 1.09002 * 110.66582 * 59.29865 * 13 11 10 15 15 C 1.54997 * 110.74845 * 296.08080 * 13 11 10 16 16 C 1.55825 * 102.78890 * 241.49069 * 15 13 11 17 17 H 1.08999 * 115.38476 * 158.11338 * 16 15 13 18 18 O 1.46532 * 101.24178 * 32.42384 * 16 15 13 19 19 C 1.46778 * 99.83258 * 305.92420 * 18 16 15 20 20 H 1.09001 * 116.43975 * 179.80675 * 19 18 16 21 21 C 1.58722 * 100.81925 * 306.53034 * 19 18 16 22 22 H 1.08996 * 118.99267 * 171.84887 * 21 19 18 23 23 C 1.53004 * 116.91291 * 329.77732 * 21 19 18 24 24 C 1.52997 * 60.86444 * 89.30165 * 23 21 19 25 25 H 1.09001 * 120.88201 * 112.81250 * 24 23 21 26 26 H 0.96997 * 119.99997 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47067 * 59.99853 * 9 7 2 28 28 H 1.08998 * 109.46625 * 299.99575 * 9 7 2 29 29 H 0.96994 * 120.00294 * 359.97438 * 10 9 7 30 30 H 1.08999 * 110.75371 * 359.81858 * 15 13 11 31 31 H 1.09009 * 110.74822 * 123.16893 * 15 13 11 32 32 H 1.09001 * 117.40835 * 341.56286 * 23 21 19 33 33 H 1.09006 * 117.40761 * 197.04257 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5614 -5.1050 0.0020 13 6 2.7331 -6.0288 0.0005 14 1 3.3796 -5.9826 0.8769 15 6 3.5733 -6.0322 -1.3020 16 6 3.2034 -7.4013 -1.9475 17 1 3.3720 -7.4721 -3.0221 18 8 1.8131 -7.5565 -1.5113 19 6 1.9854 -7.3944 -0.0627 20 1 1.0822 -7.4611 0.5439 21 6 3.1074 -8.4790 0.2271 22 1 3.5617 -8.5176 1.2171 23 6 3.1298 -9.7115 -0.6793 24 6 3.9331 -8.4741 -1.0846 25 1 5.0227 -8.4958 -1.1032 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 3.1567 -3.4354 0.0002 30 1 3.2815 -5.2074 -1.9521 31 1 4.6385 -5.9878 -1.0746 32 1 2.2268 -9.9322 -1.2485 33 1 3.6882 -10.5804 -0.3309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935694911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:02 Heat of formation + Delta-G solvation = -62.148581 kcal Electronic energy + Delta-G solvation = -16797.589604 eV Core-core repulsion = 14016.577676 eV Total energy + Delta-G solvation = -2781.011928 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.44680 -40.09734 -36.18341 -35.27083 -34.45190 -33.11637 -30.35881 -29.29058 -25.72995 -24.37206 -23.39219 -21.42748 -21.24700 -20.75397 -18.94438 -18.00999 -17.55305 -17.27949 -16.72197 -16.23381 -15.85317 -15.34033 -14.92920 -14.33068 -14.12242 -13.94582 -13.57924 -13.35393 -12.93259 -12.84168 -12.72834 -12.38085 -12.24283 -12.20907 -12.06049 -11.48004 -11.21948 -10.99155 -10.83543 -10.63921 -10.57355 -9.86524 -8.30736 -6.48026 1.42479 1.44006 1.57554 1.72204 2.26731 2.44877 2.68526 2.87029 3.04250 3.46491 3.48762 3.64046 3.84143 3.89380 4.07844 4.18414 4.26043 4.42964 4.63612 4.67794 4.83903 4.89482 4.95154 4.99418 5.08821 5.17394 5.20182 5.35730 5.46628 5.57101 5.66659 5.82531 6.63181 6.87356 7.21549 7.46575 8.81976 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.058901 B = 0.005025 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.258807 B = 5571.041334 C = 5785.408666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.265 3.735 10 N -0.704 5.704 11 C 0.502 3.498 12 O -0.603 6.603 13 C -0.125 4.125 14 H 0.140 0.860 15 C -0.127 4.127 16 C 0.077 3.923 17 H 0.145 0.855 18 O -0.403 6.403 19 C 0.103 3.897 20 H 0.115 0.885 21 C -0.195 4.195 22 H 0.148 0.852 23 C -0.135 4.135 24 C -0.179 4.179 25 H 0.156 0.844 26 H 0.269 0.731 27 H -0.017 1.017 28 H -0.014 1.014 29 H 0.409 0.591 30 H 0.062 0.938 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.595 -15.826 -0.737 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.174 1.174 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.104 0.896 9 C 0.142 3.858 10 N -0.354 5.354 11 C 0.289 3.711 12 O -0.485 6.485 13 C -0.147 4.147 14 H 0.157 0.843 15 C -0.165 4.165 16 C 0.020 3.980 17 H 0.162 0.838 18 O -0.322 6.322 19 C 0.045 3.955 20 H 0.133 0.867 21 C -0.213 4.213 22 H 0.165 0.835 23 C -0.172 4.172 24 C -0.196 4.196 25 H 0.173 0.827 26 H 0.078 0.922 27 H 0.001 0.999 28 H 0.004 0.996 29 H 0.244 0.756 30 H 0.081 0.919 31 H 0.144 0.856 32 H 0.097 0.903 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.400 -15.867 -0.874 20.787 hybrid contribution -0.139 1.255 0.128 1.269 sum 13.261 -14.612 -0.746 19.746 Atomic orbital electron populations 1.70155 1.08412 1.28554 1.50024 1.26111 0.95769 1.04055 0.93771 0.85074 0.79129 0.77094 0.77678 1.17413 1.20492 1.20410 1.21641 0.94332 0.90408 1.52848 0.89630 1.18549 0.88778 0.84580 0.93861 1.46163 1.11108 1.05384 1.72714 1.21292 0.89572 0.84973 0.75229 1.90635 1.19687 1.85591 1.52552 1.22977 0.96700 0.92025 1.02949 0.84273 1.23209 1.01710 0.97775 0.93823 1.24529 0.79948 0.93193 1.00289 0.83771 1.90143 1.27955 1.92945 1.21202 1.24621 0.97029 0.91526 0.82285 0.86733 1.24808 0.99941 0.99407 0.97189 0.83473 1.22904 1.01695 0.91859 1.00717 1.24375 0.99789 0.98685 0.96799 0.82685 0.92236 0.99945 0.99561 0.75567 0.91876 0.85592 0.90305 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.99 42.43 29.54 68.60 2.03 44.46 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -30.50 9.28 25.60 0.24 -30.26 16 8 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.27 14.99 5.43 85.64 0.46 15.45 16 10 N -0.70 -30.60 5.53 -466.78 -2.58 -33.18 16 11 C 0.50 21.11 6.99 87.66 0.61 21.72 16 12 O -0.60 -31.96 15.90 -3.03 -0.05 -32.01 16 13 C -0.13 -3.51 2.87 -9.88 -0.03 -3.54 16 14 H 0.14 2.93 8.03 -2.39 -0.02 2.91 16 15 C -0.13 -2.86 6.14 32.25 0.20 -2.66 16 16 C 0.08 1.71 5.61 32.54 0.18 1.90 16 17 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 18 O -0.40 -13.20 10.81 -148.98 -1.61 -14.81 16 19 C 0.10 2.99 4.73 33.63 0.16 3.15 16 20 H 0.11 3.79 7.76 -2.39 -0.02 3.77 16 21 C -0.20 -3.65 6.73 -8.06 -0.05 -3.71 16 22 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 23 C -0.14 -2.26 9.81 30.59 0.30 -1.96 16 24 C -0.18 -2.83 6.62 -9.14 -0.06 -2.90 16 25 H 0.16 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 27 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 28 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H 0.41 14.45 8.32 -92.71 -0.77 13.68 16 30 H 0.06 1.71 7.76 -2.39 -0.02 1.69 16 31 H 0.13 1.79 8.02 -2.38 -0.02 1.77 16 32 H 0.08 1.67 7.67 -2.39 -0.02 1.65 16 33 H 0.13 1.43 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -77.04 278.37 0.89 -76.14 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.35 Total: 18.46 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 2.47 Total: -2.20 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -2.30 Total: -90.04 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -1.66 Total: -46.82 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -77.04 0.89 -76.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.996 kcal (2) G-P(sol) polarization free energy of solvation -77.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds