Wall clock time and date at job start Sun Mar 29 2020 22:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35131 * 126.44412 * 2 1 4 4 O 1.33923 * 108.76792 * 180.02562 * 3 2 1 5 5 C 1.34922 * 109.38768 * 359.72883 * 4 3 2 6 6 C 1.46656 * 125.98976 * 180.31424 * 5 4 3 7 7 O 1.21696 * 119.99746 * 172.81662 * 6 5 4 8 8 N 1.34770 * 119.99992 * 352.80434 * 6 5 4 9 9 C 1.46504 * 120.00321 * 3.48200 * 8 6 5 10 10 C 1.46505 * 120.00012 * 183.47450 * 8 6 5 11 11 C 1.50695 * 109.47053 * 90.00423 * 10 8 6 12 12 H 1.08007 * 119.99789 * 0.02562 * 11 10 8 13 13 C 1.37878 * 120.00046 * 180.02562 * 11 10 8 14 14 N 1.31509 * 119.99992 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99875 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47127 * 90.00246 * 15 13 11 17 17 H 1.48498 * 109.46914 * 209.99945 * 15 13 11 18 18 H 1.48497 * 109.47094 * 329.99972 * 15 13 11 19 19 C 1.36548 * 108.01585 * 0.43372 * 5 4 3 20 20 C 1.50702 * 126.63969 * 179.83672 * 19 5 4 21 21 H 1.09009 * 109.46884 * 269.97943 * 1 2 3 22 22 H 1.09002 * 109.47421 * 29.97469 * 1 2 3 23 23 H 1.08995 * 109.47245 * 149.98118 * 1 2 3 24 24 H 1.07998 * 125.61153 * 359.97438 * 3 2 1 25 25 H 1.08991 * 109.47594 * 83.93006 * 9 8 6 26 26 H 1.08994 * 109.47006 * 203.93500 * 9 8 6 27 27 H 1.09001 * 109.46691 * 323.92976 * 9 8 6 28 28 H 1.08993 * 109.47185 * 210.00406 * 10 8 6 29 29 H 1.09005 * 109.46686 * 330.00420 * 10 8 6 30 30 H 0.97003 * 120.00017 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.47538 * 269.71841 * 20 19 5 32 32 H 1.08999 * 109.47347 * 149.71398 * 20 19 5 33 33 H 1.09005 * 109.47295 * 29.71708 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5857 0.6804 -0.0006 5 6 3.6260 -0.6682 0.0051 6 6 4.8378 -1.4942 0.0129 7 8 4.7512 -2.7003 0.1493 8 7 6.0473 -0.9174 -0.1312 9 6 6.1578 0.5408 -0.2190 10 6 7.2518 -1.7487 -0.1998 11 6 7.5324 -2.1089 -1.6359 12 1 6.8791 -1.7537 -2.4192 13 6 8.6230 -2.8918 -1.9498 14 7 9.4181 -3.3247 -0.9960 15 14 8.9712 -3.3377 -3.7302 16 1 9.8505 -2.3057 -4.3360 17 1 9.6470 -4.6588 -3.7865 18 1 7.6930 -3.4029 -4.4832 19 6 2.3407 -1.1291 -0.0005 20 6 1.9023 -2.5710 -0.0007 21 1 -0.3633 -0.0004 1.0278 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3633 -0.8898 -0.5141 24 1 1.9770 2.1145 -0.0004 25 1 6.1727 0.9653 0.7847 26 1 7.0788 0.8047 -0.7388 27 1 5.3041 0.9373 -0.7686 28 1 8.0982 -1.1964 0.2083 29 1 7.0984 -2.6590 0.3799 30 1 10.1857 -3.8752 -1.2169 31 1 1.7967 -2.9186 -1.0283 32 1 0.9451 -2.6598 0.5131 33 1 2.6481 -3.1776 0.5132 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117135557.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:14 Heat of formation + Delta-G solvation = -24.957183 kcal Electronic energy + Delta-G solvation = -16853.775506 eV Core-core repulsion = 14074.376319 eV Total energy + Delta-G solvation = -2779.399188 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.51956 -38.64566 -35.32398 -34.30916 -32.60676 -31.24302 -28.32557 -27.34646 -26.94895 -25.64365 -23.46262 -21.35213 -19.93182 -18.72051 -16.64974 -16.60743 -16.15386 -15.77694 -15.29628 -14.31130 -14.09297 -13.93044 -13.28385 -13.07668 -12.79285 -12.58420 -12.43460 -12.32278 -12.09149 -11.99706 -11.56799 -11.35576 -11.17817 -10.88230 -10.57286 -10.16279 -9.65947 -9.25187 -9.15754 -8.44767 -8.32474 -7.66160 -6.05553 -4.10786 1.44092 2.47588 3.05514 3.30379 3.36802 3.41589 3.78843 3.98727 4.44270 4.82931 4.86916 5.02245 5.27940 5.35226 5.49505 5.54990 5.71480 5.81974 5.91443 5.97756 6.00196 6.04324 6.21495 6.34677 6.43728 6.69737 6.96189 7.20409 7.39660 7.49292 7.90469 8.20090 8.31426 8.82011 8.98590 9.54269 11.02489 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036832 B = 0.006209 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.017720 B = 4508.816805 C = 4716.832678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.193 4.193 3 C -0.033 4.033 4 O -0.155 6.155 5 C -0.059 4.059 6 C 0.586 3.414 7 O -0.520 6.520 8 N -0.589 5.589 9 C 0.080 3.920 10 C 0.244 3.756 11 C -0.529 4.529 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.894 5.894 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.274 1.274 19 C -0.104 4.104 20 C -0.093 4.093 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.202 0.798 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.423 9.426 2.245 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.194 4.194 3 C -0.102 4.102 4 O -0.050 6.050 5 C -0.111 4.111 6 C 0.372 3.628 7 O -0.399 6.399 8 N -0.319 5.319 9 C -0.063 4.063 10 C 0.125 3.875 11 C -0.568 4.568 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.107 4.107 20 C -0.149 4.149 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.219 0.781 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.969 8.850 2.350 16.702 hybrid contribution 0.134 -0.019 -1.041 1.050 sum -13.835 8.831 1.310 16.465 Atomic orbital electron populations 1.20129 0.89163 1.02457 1.01891 1.20289 0.97203 0.92308 1.09622 1.24087 0.81116 0.99612 1.05435 1.84339 1.28060 1.22046 1.70604 1.22452 0.96486 0.80075 1.12080 1.16637 0.81150 0.86219 0.78746 1.90798 1.85058 1.12659 1.51370 1.48123 1.07652 1.07373 1.68800 1.21832 1.02919 0.80750 1.00820 1.19407 0.79583 0.90678 0.97804 1.21428 1.10619 1.32224 0.92508 0.92372 1.24928 0.95855 0.95478 0.97737 1.69932 1.15746 1.35539 1.32055 0.86473 0.78382 0.77846 0.84609 1.20591 1.21016 1.19864 1.20427 0.90889 0.97157 1.02232 1.20387 1.01569 0.90354 1.02607 0.91629 0.91794 0.91493 0.78142 0.93539 0.90416 0.91253 0.94575 0.93419 0.92644 0.91267 0.92076 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.16 36.00 0.37 -0.38 16 2 C -0.19 -2.55 6.14 -104.93 -0.64 -3.19 16 3 C -0.03 -0.41 12.00 29.63 0.36 -0.05 16 4 O -0.15 -2.44 7.30 4.99 0.04 -2.41 16 5 C -0.06 -1.10 6.76 -36.80 -0.25 -1.35 16 6 C 0.59 13.35 7.64 -12.87 -0.10 13.25 16 7 O -0.52 -13.34 14.27 5.19 0.07 -13.26 16 8 N -0.59 -13.41 2.86 -184.52 -0.53 -13.94 16 9 C 0.08 1.43 9.62 59.85 0.58 2.01 16 10 C 0.24 6.53 5.16 -5.19 -0.03 6.50 16 11 C -0.53 -15.22 9.39 -34.44 -0.32 -15.55 16 12 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 15 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.10 -1.73 6.20 -104.43 -0.65 -2.38 16 20 C -0.09 -1.43 9.67 36.01 0.35 -1.08 16 21 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 24 H 0.20 1.54 8.06 -52.49 -0.42 1.11 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.36 8.03 -51.93 -0.42 0.95 16 27 H 0.07 1.15 5.41 -51.93 -0.28 0.86 16 28 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 29 H 0.05 1.41 7.37 -51.93 -0.38 1.03 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 33 H 0.09 1.62 6.31 -51.93 -0.33 1.29 16 LS Contribution 284.81 15.07 4.29 4.29 Total: -1.00 -32.84 284.81 -5.17 -38.02 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -4.32 Total: -3.23 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.44 Total: -0.53 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.21 Total: -39.84 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.11 Total: -15.67 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.84 -5.17 -38.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117135557.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.058 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds