Wall clock time and date at job start Sun Mar 29 2020 22:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35131 * 126.44412 * 2 1 4 4 O 1.33923 * 108.76792 * 180.02562 * 3 2 1 5 5 C 1.34922 * 109.38768 * 359.72883 * 4 3 2 6 6 C 1.46656 * 125.98976 * 180.31424 * 5 4 3 7 7 O 1.21696 * 119.99746 * 172.81662 * 6 5 4 8 8 N 1.34770 * 119.99992 * 352.80434 * 6 5 4 9 9 C 1.46504 * 120.00321 * 3.48200 * 8 6 5 10 10 C 1.46505 * 120.00012 * 183.47450 * 8 6 5 11 11 C 1.50695 * 109.47053 * 90.00423 * 10 8 6 12 12 H 1.08007 * 119.99789 * 0.02562 * 11 10 8 13 13 C 1.37878 * 120.00046 * 180.02562 * 11 10 8 14 14 N 1.31509 * 119.99992 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99875 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47127 * 90.00246 * 15 13 11 17 17 H 1.48498 * 109.46914 * 209.99945 * 15 13 11 18 18 H 1.48497 * 109.47094 * 329.99972 * 15 13 11 19 19 C 1.36548 * 108.01585 * 0.43372 * 5 4 3 20 20 C 1.50702 * 126.63969 * 179.83672 * 19 5 4 21 21 H 1.09009 * 109.46884 * 269.97943 * 1 2 3 22 22 H 1.09002 * 109.47421 * 29.97469 * 1 2 3 23 23 H 1.08995 * 109.47245 * 149.98118 * 1 2 3 24 24 H 1.07998 * 125.61153 * 359.97438 * 3 2 1 25 25 H 1.08991 * 109.47594 * 83.93006 * 9 8 6 26 26 H 1.08994 * 109.47006 * 203.93500 * 9 8 6 27 27 H 1.09001 * 109.46691 * 323.92976 * 9 8 6 28 28 H 1.08993 * 109.47185 * 210.00406 * 10 8 6 29 29 H 1.09005 * 109.46686 * 330.00420 * 10 8 6 30 30 H 0.97003 * 120.00017 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.47538 * 269.71841 * 20 19 5 32 32 H 1.08999 * 109.47347 * 149.71398 * 20 19 5 33 33 H 1.09005 * 109.47295 * 29.71708 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5857 0.6804 -0.0006 5 6 3.6260 -0.6682 0.0051 6 6 4.8378 -1.4942 0.0129 7 8 4.7512 -2.7003 0.1493 8 7 6.0473 -0.9174 -0.1312 9 6 6.1578 0.5408 -0.2190 10 6 7.2518 -1.7487 -0.1998 11 6 7.5324 -2.1089 -1.6359 12 1 6.8791 -1.7537 -2.4192 13 6 8.6230 -2.8918 -1.9498 14 7 9.4181 -3.3247 -0.9960 15 14 8.9712 -3.3377 -3.7302 16 1 9.8505 -2.3057 -4.3360 17 1 9.6470 -4.6588 -3.7865 18 1 7.6930 -3.4029 -4.4832 19 6 2.3407 -1.1291 -0.0005 20 6 1.9023 -2.5710 -0.0007 21 1 -0.3633 -0.0004 1.0278 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3633 -0.8898 -0.5141 24 1 1.9770 2.1145 -0.0004 25 1 6.1727 0.9653 0.7847 26 1 7.0788 0.8047 -0.7388 27 1 5.3041 0.9373 -0.7686 28 1 8.0982 -1.1964 0.2083 29 1 7.0984 -2.6590 0.3799 30 1 10.1857 -3.8752 -1.2169 31 1 1.7967 -2.9186 -1.0283 32 1 0.9451 -2.6598 0.5131 33 1 2.6481 -3.1776 0.5132 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117135557.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:13 Heat of formation + Delta-G solvation = -46.520004 kcal Electronic energy + Delta-G solvation = -16854.710540 eV Core-core repulsion = 14074.376319 eV Total energy + Delta-G solvation = -2780.334222 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.70651 -40.39261 -36.95964 -35.64682 -34.72612 -32.42198 -30.17157 -28.66357 -28.02075 -27.29705 -25.33024 -22.89150 -21.09390 -20.21224 -18.74522 -18.06576 -17.50742 -17.27445 -16.96912 -16.23424 -15.77329 -15.03608 -14.65635 -14.33834 -14.23897 -13.89863 -13.76955 -13.66045 -13.54786 -13.39282 -13.06844 -13.01936 -12.73232 -12.50522 -12.40454 -12.22004 -11.76086 -10.97136 -10.66690 -10.32055 -9.68349 -9.34270 -8.25387 -6.41122 0.12150 1.35836 1.38880 1.39601 1.49712 1.77983 2.15531 2.35169 2.44525 3.04143 3.63551 3.78863 3.95895 4.27579 4.38958 4.45312 4.60646 4.70884 4.72628 4.85265 4.92144 4.98137 5.05546 5.08021 5.13682 5.15700 5.31300 5.47979 5.61894 5.75496 5.99057 6.00714 6.57490 6.66423 7.13792 7.32009 8.82010 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036832 B = 0.006209 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.017720 B = 4508.816805 C = 4716.832678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.204 4.204 3 C -0.003 4.003 4 O -0.161 6.161 5 C -0.105 4.105 6 C 0.578 3.422 7 O -0.569 6.569 8 N -0.601 5.601 9 C 0.081 3.919 10 C 0.259 3.741 11 C -0.548 4.548 12 H 0.051 0.949 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.971 3.029 16 H -0.262 1.262 17 H -0.278 1.278 18 H -0.274 1.274 19 C -0.100 4.100 20 C -0.093 4.093 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.066 0.934 24 H 0.256 0.744 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.030 0.970 29 H 0.006 0.994 30 H 0.269 0.731 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.525 11.669 1.197 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.205 4.205 3 C -0.072 4.072 4 O -0.057 6.057 5 C -0.156 4.156 6 C 0.367 3.633 7 O -0.451 6.451 8 N -0.330 5.330 9 C -0.061 4.061 10 C 0.138 3.862 11 C -0.587 4.587 12 H 0.069 0.931 13 C -0.188 4.188 14 N -0.565 5.565 15 Si 0.795 3.205 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.199 1.199 19 C -0.103 4.103 20 C -0.149 4.149 21 H 0.097 0.903 22 H 0.109 0.891 23 H 0.085 0.915 24 H 0.272 0.728 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.048 0.952 29 H 0.024 0.976 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.076 11.137 1.309 19.601 hybrid contribution 0.656 -0.634 -0.652 1.121 sum -15.420 10.504 0.657 18.669 Atomic orbital electron populations 1.20239 0.86138 1.03855 1.03150 1.20713 0.99168 0.90900 1.09714 1.25217 0.79338 1.01675 1.00958 1.84271 1.30141 1.20311 1.70941 1.21601 0.95156 0.81378 1.17494 1.17156 0.82202 0.86328 0.77569 1.90748 1.86090 1.14866 1.53431 1.48125 1.06695 1.09040 1.69150 1.22017 1.03679 0.77856 1.02500 1.18901 0.81148 0.89732 0.96407 1.21646 1.10945 1.32984 0.93091 0.93086 1.25856 0.95427 0.95020 1.02539 1.70045 1.16198 1.35903 1.34371 0.85371 0.78284 0.78117 0.78769 1.18655 1.20273 1.19927 1.20845 0.90927 0.98539 1.00034 1.20389 1.02165 0.89717 1.02677 0.90347 0.89139 0.91473 0.72776 0.91325 0.90484 0.89484 0.95201 0.97634 0.92186 0.91115 0.88735 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.16 71.24 0.72 -0.38 16 2 C -0.20 -4.65 6.14 -20.06 -0.12 -4.77 16 3 C 0.00 -0.06 12.00 67.10 0.81 0.74 16 4 O -0.16 -4.71 7.30 -5.05 -0.04 -4.74 16 5 C -0.10 -3.94 6.76 24.07 0.16 -3.77 16 6 C 0.58 27.60 7.64 86.44 0.66 28.26 16 7 O -0.57 -31.32 14.27 -4.33 -0.06 -31.38 16 8 N -0.60 -28.46 2.86 -855.93 -2.45 -30.91 16 9 C 0.08 2.89 9.62 127.77 1.23 4.12 16 10 C 0.26 14.63 5.16 85.63 0.44 15.08 16 11 C -0.55 -32.66 9.39 25.60 0.24 -32.42 16 12 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 13 C 0.01 0.64 5.46 84.66 0.46 1.11 16 14 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 15 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 16 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 19 C -0.10 -3.23 6.20 -19.74 -0.12 -3.35 16 20 C -0.09 -2.87 9.67 71.24 0.69 -2.18 16 21 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 22 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.07 0.98 8.05 -2.39 -0.02 0.96 16 24 H 0.26 2.14 8.06 -2.91 -0.02 2.12 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.08 2.70 8.03 -2.39 -0.02 2.68 16 27 H 0.09 2.78 5.41 -2.39 -0.01 2.76 16 28 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 29 H 0.01 0.35 7.37 -2.38 -0.02 0.34 16 30 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.09 2.19 8.06 -2.39 -0.02 2.17 16 33 H 0.06 2.21 6.31 -2.38 -0.02 2.20 16 Total: -1.00 -75.75 284.81 6.04 -69.71 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.10 Total: 3.64 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 5.17 Total: 2.43 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -2.16 Total: -87.20 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.10 Total: -36.13 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -75.75 6.04 -69.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117135557.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.187 kcal (2) G-P(sol) polarization free energy of solvation -75.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds