Wall clock time and date at job start Sun Mar 29 2020 21:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47272 * 2 1 4 4 O 1.21295 * 119.99850 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00473 * 180.02562 * 3 2 1 6 6 C 1.40003 * 120.00769 * 175.68401 * 5 3 2 7 7 C 1.39365 * 119.91580 * 215.20778 * 6 5 3 8 8 C 1.38360 * 120.47246 * 180.02562 * 7 6 5 9 9 C 1.38014 * 120.28760 * 0.02562 * 8 7 6 10 10 F 1.35098 * 120.09172 * 179.97438 * 9 8 7 11 11 C 1.41002 * 119.80996 * 359.97438 * 9 8 7 12 12 C 1.41295 * 120.22791 * 179.97438 * 11 9 8 13 13 H 1.08003 * 120.00114 * 324.96033 * 12 11 9 14 14 C 1.39916 * 120.00135 * 145.23432 * 12 11 9 15 15 N 1.30852 * 120.00143 * 4.44322 * 14 12 11 16 16 Si 1.86800 * 120.00133 * 184.44249 * 14 12 11 17 17 H 1.48501 * 109.47194 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.47252 * 120.00195 * 16 14 12 19 19 H 1.48499 * 109.47449 * 240.00061 * 16 14 12 20 20 C 1.38146 * 119.90757 * 35.44206 * 6 5 3 21 21 H 1.09001 * 109.46713 * 299.99843 * 1 2 3 22 22 H 1.08998 * 109.47062 * 59.99782 * 1 2 3 23 23 H 1.08999 * 109.47129 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46713 * 240.00157 * 2 1 3 25 25 H 1.08998 * 109.47062 * 120.00218 * 2 1 3 26 26 H 0.97001 * 119.99423 * 355.68190 * 5 3 2 27 27 H 1.08002 * 119.76322 * 359.97438 * 7 6 5 28 28 H 1.07999 * 119.85990 * 179.97438 * 8 7 6 29 29 H 0.97005 * 120.00444 * 179.97438 * 15 14 12 30 30 H 1.08000 * 120.14562 * 0.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8248 2.9837 -0.0918 7 6 4.9964 3.2581 -0.7948 8 6 5.4690 4.5549 -0.8919 9 6 4.7841 5.5921 -0.2918 10 9 5.2494 6.8567 -0.3887 11 6 3.5974 5.3280 0.4225 12 6 2.8895 6.3831 1.0406 13 1 3.4274 7.2144 1.4720 14 6 1.4920 6.3481 1.0990 15 7 0.8448 5.2992 0.6597 16 14 0.5501 7.7989 1.8042 17 1 1.5075 8.8519 2.2282 18 1 -0.3618 8.3478 0.7685 19 1 -0.2446 7.3509 2.9760 20 6 3.1259 4.0066 0.5195 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.9873 0.9321 0.0624 27 1 5.5397 2.4528 -1.2666 28 1 6.3782 4.7563 -1.4388 29 1 -0.1240 5.2747 0.7005 30 1 2.2203 3.7927 1.0678 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142719656.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:43 Heat of formation + Delta-G solvation = -68.996849 kcal Electronic energy + Delta-G solvation = -16553.515948 eV Core-core repulsion = 13648.746752 eV Total energy + Delta-G solvation = -2904.769196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.15731 -39.48241 -37.01672 -34.19738 -33.06670 -32.43539 -29.68279 -27.98844 -25.33654 -24.13061 -21.59308 -20.65185 -19.39313 -17.66926 -16.52612 -15.98277 -15.75652 -15.26018 -14.86670 -14.22744 -13.94528 -13.60088 -13.00212 -12.91351 -12.51285 -12.13811 -11.76428 -11.66207 -11.50886 -11.43146 -11.07540 -11.00969 -10.86750 -10.56580 -10.23659 -9.64659 -9.19051 -9.01516 -8.76716 -7.40537 -6.85978 -6.46040 -4.36405 2.55217 2.82562 3.12877 3.15757 3.21256 3.41433 3.82478 4.02912 4.69361 5.10006 5.28879 5.29334 5.48886 5.75980 5.91005 5.93173 6.12128 6.14028 6.40840 6.42700 6.83313 6.97237 7.03040 7.28952 7.47651 7.60166 7.77258 8.07719 8.19273 8.37207 8.57303 8.89038 8.90415 8.98630 10.34002 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.010472 C = 0.006907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.898867 B = 2673.196183 C = 4052.722002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 C 0.485 3.515 4 O -0.481 6.481 5 N -0.675 5.675 6 C 0.130 3.870 7 C -0.236 4.236 8 C -0.116 4.116 9 C -0.033 4.033 10 F -0.164 7.164 11 C 0.089 3.911 12 C -0.457 4.457 13 H 0.079 0.921 14 C 0.066 3.934 15 N -0.770 5.770 16 Si 0.913 3.087 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.131 4.131 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.395 0.605 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.280 0.720 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 -9.436 -0.072 9.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.181 4.181 3 C 0.271 3.729 4 O -0.352 6.352 5 N -0.320 5.320 6 C 0.038 3.962 7 C -0.257 4.257 8 C -0.136 4.136 9 C -0.053 4.053 10 F -0.143 7.143 11 C 0.086 3.914 12 C -0.487 4.487 13 H 0.098 0.902 14 C -0.153 4.153 15 N -0.394 5.394 16 Si 0.738 3.262 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.200 1.200 20 C -0.153 4.153 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.229 0.771 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.092 0.908 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.178 -8.840 -0.114 8.843 hybrid contribution 0.075 0.362 0.102 0.384 sum -0.103 -8.478 -0.011 8.479 Atomic orbital electron populations 1.21502 0.93297 1.00839 1.03633 1.21602 0.98485 0.94514 1.03520 1.20838 0.82560 0.91762 0.77764 1.90942 1.54375 1.45029 1.44864 1.43440 1.07127 1.07465 1.73986 1.17713 0.95607 0.83454 0.99454 1.19911 1.00455 0.95484 1.09860 1.20249 0.99443 0.92215 1.01678 1.18038 1.00666 0.78113 1.08532 1.91265 1.88657 1.38890 1.95477 1.17586 0.89474 0.93486 0.90901 1.19430 0.91237 1.05164 1.32888 0.90236 1.25953 0.98272 0.97150 0.93877 1.69871 1.09753 1.26484 1.33265 0.86172 0.79562 0.81441 0.79011 1.18531 1.19916 1.19962 1.21695 1.02247 0.89653 1.01658 0.91881 0.91961 0.92705 0.89596 0.89585 0.77124 0.88384 0.87890 0.90838 0.82449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.20 37.16 0.34 -1.38 16 2 C -0.14 -1.76 6.42 -27.88 -0.18 -1.94 16 3 C 0.49 8.94 7.67 -10.99 -0.08 8.86 16 4 O -0.48 -11.33 13.37 5.54 0.07 -11.25 16 5 N -0.68 -12.19 5.34 -9.90 -0.05 -12.24 16 6 C 0.13 2.98 6.29 -83.74 -0.53 2.45 16 7 C -0.24 -5.07 9.96 -39.12 -0.39 -5.46 16 8 C -0.12 -2.66 10.00 -39.62 -0.40 -3.06 16 9 C -0.03 -0.87 7.31 -38.62 -0.28 -1.15 16 10 F -0.16 -4.26 16.82 2.25 0.04 -4.22 16 11 C 0.09 2.50 5.55 -106.78 -0.59 1.91 16 12 C -0.46 -12.83 8.69 -37.79 -0.33 -13.16 16 13 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 14 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 15 N -0.77 -21.06 10.55 55.55 0.59 -20.47 16 16 Si 0.91 19.87 29.56 -169.99 -5.03 14.85 16 17 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 20 C -0.13 -3.49 7.30 -38.71 -0.28 -3.78 16 21 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 22 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.40 5.37 8.82 -40.82 -0.36 5.01 16 27 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.28 7.15 8.30 -40.82 -0.34 6.81 16 30 H 0.16 4.47 4.34 -52.49 -0.23 4.24 16 LS Contribution 266.81 15.07 4.02 4.02 Total: -1.00 -31.44 266.81 -6.26 -37.70 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.09 Total: 6.65 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.81 Total: -15.04 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.53 Total: -32.71 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.25 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.04 Total: -4.22 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.44 -6.26 -37.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142719656.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.292 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds