Wall clock time and date at job start Sun Mar 29 2020 22:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86807 * 119.99917 * 2 1 4 4 H 1.48496 * 109.47119 * 269.99784 * 3 2 1 5 5 H 1.48502 * 109.46778 * 29.99970 * 3 2 1 6 6 H 1.48496 * 109.47106 * 149.99592 * 3 2 1 7 7 C 1.40046 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00511 * 180.02562 * 7 2 1 9 9 C 1.46382 * 119.99455 * 0.02562 * 7 2 1 10 10 O 1.21683 * 120.00149 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99641 * 179.97438 * 9 7 2 12 12 C 1.46503 * 119.99802 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47023 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.25497 * 54.52248 * 13 12 11 15 15 C 1.50136 * 109.23220 * 295.06033 * 13 12 11 16 16 C 1.29926 * 124.13456 * 232.64150 * 15 13 12 17 17 C 1.51731 * 120.91383 * 0.60507 * 16 15 13 18 18 H 1.09002 * 113.84838 * 201.15444 * 17 16 15 19 19 C 1.55343 * 106.32275 * 326.49529 * 17 16 15 20 20 C 1.53425 * 109.25793 * 174.00899 * 13 12 11 21 21 H 1.08996 * 112.51713 * 291.34019 * 20 13 12 22 22 C 1.54270 * 108.97192 * 57.04171 * 20 13 12 23 23 O 1.43385 * 107.49320 * 92.15737 * 22 20 13 24 24 H 0.97004 * 119.99999 * 0.02562 * 1 2 3 25 25 H 0.97002 * 120.00512 * 0.02562 * 11 9 7 26 26 H 1.09006 * 109.46487 * 60.00804 * 12 11 9 27 27 H 1.08998 * 109.47420 * 300.00549 * 12 11 9 28 28 H 1.07998 * 117.93137 * 52.61434 * 15 13 12 29 29 H 1.08008 * 119.54482 * 180.60662 * 16 15 13 30 30 H 1.09002 * 111.44414 * 311.14208 * 19 17 16 31 31 H 1.09002 * 111.45049 * 186.14892 * 19 17 16 32 32 H 1.08999 * 109.84585 * 211.63676 * 22 20 13 33 33 H 1.08996 * 109.84979 * 332.56189 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4381 2.6527 0.7001 6 1 3.5382 1.4403 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9490 -3.6476 0.0005 12 6 1.2165 -4.9164 0.0011 13 6 2.2108 -6.0793 0.0016 14 1 2.8983 -5.9640 0.8396 15 6 2.9886 -6.0655 -1.2825 16 6 3.1089 -7.0896 -2.0730 17 6 2.4369 -8.4101 -1.7458 18 1 2.8820 -9.2679 -2.2500 19 6 2.4505 -8.5351 -0.1975 20 6 1.4448 -7.3999 0.1534 21 1 0.9946 -7.5104 1.1399 22 6 0.4125 -7.5149 -0.9872 23 8 1.0391 -8.2217 -2.0660 24 1 -0.4850 0.8401 -0.0004 25 1 2.9190 -3.6476 0.0009 26 1 0.5896 -4.9743 -0.8888 27 1 0.5901 -4.9739 0.8913 28 1 3.4786 -5.1462 -1.5673 29 1 3.6954 -6.9998 -2.9755 30 1 3.4405 -8.3305 0.2101 31 1 2.0821 -9.5083 0.1271 32 1 -0.4613 -8.0671 -0.6413 33 1 0.1143 -6.5201 -1.3182 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154429270.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:04 Heat of formation + Delta-G solvation = -64.602444 kcal Electronic energy + Delta-G solvation = -16866.789934 eV Core-core repulsion = 14085.671599 eV Total energy + Delta-G solvation = -2781.118335 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.86028 -37.33264 -35.22993 -33.05009 -32.29813 -31.58440 -29.81262 -27.11610 -25.80542 -24.01406 -22.13645 -20.47605 -19.64803 -18.40002 -17.48779 -16.81681 -15.58925 -15.28340 -14.66866 -14.36929 -14.14560 -13.85691 -13.65361 -13.08414 -12.85213 -12.54204 -12.37595 -11.92206 -11.49689 -11.40135 -11.17527 -11.05956 -10.93141 -10.55850 -10.39772 -10.21829 -10.11970 -9.42525 -9.00355 -8.84839 -7.61620 -7.49156 -6.18227 -4.63876 2.26612 3.14202 3.20870 3.24201 3.99060 4.10092 4.35189 4.54132 4.59890 4.72879 4.87330 5.01146 5.15756 5.26011 5.31259 5.52582 5.57697 5.65821 5.73025 5.77738 5.86232 5.97939 6.02764 6.12437 6.42118 6.57655 6.69428 6.91502 6.97935 7.43450 7.92297 8.09188 8.32712 9.02781 9.53459 10.60556 10.79091 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.052262 B = 0.005322 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.632618 B = 5259.942704 C = 5470.897851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.767 5.767 12 C 0.139 3.861 13 C -0.068 4.068 14 H 0.087 0.913 15 C -0.118 4.118 16 C -0.194 4.194 17 C 0.107 3.893 18 H 0.116 0.884 19 C -0.147 4.147 20 C -0.116 4.116 21 H 0.102 0.898 22 C 0.045 3.955 23 O -0.376 6.376 24 H 0.268 0.732 25 H 0.379 0.621 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 -14.320 -0.317 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.464 6.464 11 N -0.423 5.423 12 C 0.014 3.986 13 C -0.087 4.087 14 H 0.105 0.895 15 C -0.136 4.136 16 C -0.212 4.212 17 C 0.050 3.950 18 H 0.134 0.866 19 C -0.185 4.185 20 C -0.135 4.135 21 H 0.120 0.880 22 C -0.032 4.032 23 O -0.296 6.296 24 H 0.079 0.921 25 H 0.211 0.789 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.731 -14.262 -0.505 15.378 hybrid contribution 1.079 1.013 0.128 1.485 sum 6.810 -13.248 -0.378 14.901 Atomic orbital electron populations 1.70021 1.07064 1.27243 1.35385 1.25705 0.94606 1.00277 0.92620 0.86381 0.80134 0.81450 0.78822 1.19754 1.20449 1.18941 1.20883 0.93539 0.89442 1.54471 0.91491 1.18222 0.87217 0.82453 0.76332 1.90598 1.14108 1.86874 1.54813 1.46143 1.08455 1.04855 1.82852 1.20972 0.93490 0.83320 1.00839 1.20526 0.96994 0.94663 0.96503 0.89486 1.22336 0.97456 0.98431 0.95425 1.23039 1.02252 0.95783 1.00152 1.22584 0.82464 0.95469 0.94457 0.86607 1.23468 1.00323 0.98855 0.95850 1.22862 0.95834 0.94733 1.00024 0.87959 1.23351 0.95266 0.97911 0.86652 1.88709 1.21195 1.77327 1.42386 0.92113 0.78946 0.92824 0.93018 0.87041 0.87126 0.89633 0.90430 0.91100 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.26 11.83 55.55 0.66 -22.61 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.21 29.56 -169.99 -5.02 15.19 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 7 C -0.55 -15.51 9.54 -35.63 -0.34 -15.85 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.55 15.87 7.75 -12.99 -0.10 15.77 16 10 O -0.58 -19.03 15.02 5.20 0.08 -18.95 16 11 N -0.77 -17.04 5.29 -61.72 -0.33 -17.37 16 12 C 0.14 2.63 4.57 -4.04 -0.02 2.62 16 13 C -0.07 -0.96 2.17 -91.82 -0.20 -1.16 16 14 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.12 -1.65 8.40 -36.00 -0.30 -1.96 16 16 C -0.19 -2.48 9.31 -35.21 -0.33 -2.81 16 17 C 0.11 1.26 4.99 -26.13 -0.13 1.13 16 18 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 19 C -0.15 -1.52 6.27 -24.07 -0.15 -1.67 16 20 C -0.12 -1.41 3.75 -88.32 -0.33 -1.74 16 21 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 22 C 0.04 0.62 6.79 37.82 0.26 0.87 16 23 O -0.38 -5.55 11.02 -35.23 -0.39 -5.93 16 24 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 25 H 0.38 7.35 7.87 -40.82 -0.32 7.03 16 26 H 0.05 1.12 6.11 -51.93 -0.32 0.80 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.11 1.62 7.54 -52.49 -0.40 1.22 16 29 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.09 0.81 7.92 -51.93 -0.41 0.40 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.27 5.46 -51.93 -0.28 0.99 16 LS Contribution 271.02 15.07 4.08 4.08 Total: -1.00 -34.60 271.02 -6.89 -41.50 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.23 Total: 6.52 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.74 Total: -2.43 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.33 Total: -39.98 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.31 Total: -24.89 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -34.60 -6.89 -41.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154429270.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.105 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds