Wall clock time and date at job start Sun Mar 29 2020 22:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86807 * 119.99917 * 2 1 4 4 H 1.48496 * 109.47119 * 269.99784 * 3 2 1 5 5 H 1.48502 * 109.46778 * 29.99970 * 3 2 1 6 6 H 1.48496 * 109.47106 * 149.99592 * 3 2 1 7 7 C 1.40046 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00511 * 180.02562 * 7 2 1 9 9 C 1.46382 * 119.99455 * 0.02562 * 7 2 1 10 10 O 1.21683 * 120.00149 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99641 * 179.97438 * 9 7 2 12 12 C 1.46503 * 119.99802 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47023 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.25497 * 54.52248 * 13 12 11 15 15 C 1.50136 * 109.23220 * 295.06033 * 13 12 11 16 16 C 1.29926 * 124.13456 * 232.64150 * 15 13 12 17 17 C 1.51731 * 120.91383 * 0.60507 * 16 15 13 18 18 H 1.09002 * 113.84838 * 201.15444 * 17 16 15 19 19 C 1.55343 * 106.32275 * 326.49529 * 17 16 15 20 20 C 1.53425 * 109.25793 * 174.00899 * 13 12 11 21 21 H 1.08996 * 112.51713 * 291.34019 * 20 13 12 22 22 C 1.54270 * 108.97192 * 57.04171 * 20 13 12 23 23 O 1.43385 * 107.49320 * 92.15737 * 22 20 13 24 24 H 0.97004 * 119.99999 * 0.02562 * 1 2 3 25 25 H 0.97002 * 120.00512 * 0.02562 * 11 9 7 26 26 H 1.09006 * 109.46487 * 60.00804 * 12 11 9 27 27 H 1.08998 * 109.47420 * 300.00549 * 12 11 9 28 28 H 1.07998 * 117.93137 * 52.61434 * 15 13 12 29 29 H 1.08008 * 119.54482 * 180.60662 * 16 15 13 30 30 H 1.09002 * 111.44414 * 311.14208 * 19 17 16 31 31 H 1.09002 * 111.45049 * 186.14892 * 19 17 16 32 32 H 1.08999 * 109.84585 * 211.63676 * 22 20 13 33 33 H 1.08996 * 109.84979 * 332.56189 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4381 2.6527 0.7001 6 1 3.5382 1.4403 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9490 -3.6476 0.0005 12 6 1.2165 -4.9164 0.0011 13 6 2.2108 -6.0793 0.0016 14 1 2.8983 -5.9640 0.8396 15 6 2.9886 -6.0655 -1.2825 16 6 3.1089 -7.0896 -2.0730 17 6 2.4369 -8.4101 -1.7458 18 1 2.8820 -9.2679 -2.2500 19 6 2.4505 -8.5351 -0.1975 20 6 1.4448 -7.3999 0.1534 21 1 0.9946 -7.5104 1.1399 22 6 0.4125 -7.5149 -0.9872 23 8 1.0391 -8.2217 -2.0660 24 1 -0.4850 0.8401 -0.0004 25 1 2.9190 -3.6476 0.0009 26 1 0.5896 -4.9743 -0.8888 27 1 0.5901 -4.9739 0.8913 28 1 3.4786 -5.1462 -1.5673 29 1 3.6954 -6.9998 -2.9755 30 1 3.4405 -8.3305 0.2101 31 1 2.0821 -9.5083 0.1271 32 1 -0.4613 -8.0671 -0.6413 33 1 0.1143 -6.5201 -1.3182 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154429270.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:04 Heat of formation + Delta-G solvation = -90.405295 kcal Electronic energy + Delta-G solvation = -16867.908830 eV Core-core repulsion = 14085.671599 eV Total energy + Delta-G solvation = -2782.237231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.91294 -39.35995 -36.65964 -34.81900 -34.23733 -32.78994 -31.03250 -28.83280 -27.39205 -25.34398 -23.28737 -21.63829 -21.58142 -19.49049 -19.26228 -18.07402 -17.43097 -16.85191 -16.14458 -15.94020 -15.42578 -15.33808 -14.87729 -14.56432 -14.21789 -14.09855 -13.71230 -13.15769 -13.08541 -13.01195 -12.70707 -12.64979 -12.40967 -12.11021 -12.03057 -11.55637 -11.26696 -10.94252 -10.49128 -10.08981 -9.89309 -9.48060 -8.30481 -6.87347 1.19590 1.39523 1.41233 1.56664 2.23929 2.45938 3.00939 3.07581 3.40930 3.58171 3.64523 3.81281 3.97004 4.05726 4.18508 4.24760 4.36626 4.53890 4.59436 4.77228 4.84818 4.87947 4.93788 5.07614 5.15141 5.19384 5.30471 5.61419 5.83644 5.88191 5.96131 6.21640 6.25641 6.85279 7.53191 8.47668 8.66105 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.052262 B = 0.005322 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.632618 B = 5259.942704 C = 5470.897851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.535 3.465 10 O -0.634 6.634 11 N -0.753 5.753 12 C 0.142 3.858 13 C -0.054 4.054 14 H 0.103 0.897 15 C -0.141 4.141 16 C -0.183 4.183 17 C 0.099 3.901 18 H 0.145 0.855 19 C -0.134 4.134 20 C -0.114 4.114 21 H 0.119 0.881 22 C 0.040 3.960 23 O -0.397 6.397 24 H 0.275 0.725 25 H 0.395 0.605 26 H 0.029 0.971 27 H 0.039 0.961 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.275 -15.143 0.022 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.611 4.611 8 H 0.106 0.894 9 C 0.339 3.661 10 O -0.522 6.522 11 N -0.407 5.407 12 C 0.017 3.983 13 C -0.072 4.072 14 H 0.121 0.879 15 C -0.159 4.159 16 C -0.201 4.201 17 C 0.043 3.957 18 H 0.163 0.837 19 C -0.171 4.171 20 C -0.133 4.133 21 H 0.137 0.863 22 C -0.036 4.036 23 O -0.317 6.317 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.118 0.882 29 H 0.140 0.860 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.121 -15.139 -0.166 17.180 hybrid contribution 0.336 1.184 -0.037 1.231 sum 8.457 -13.955 -0.203 16.319 Atomic orbital electron populations 1.70195 1.09622 1.28971 1.36511 1.27006 0.95522 1.05060 0.91152 0.84996 0.78791 0.74947 0.79395 1.18698 1.19750 1.17058 1.21445 0.94755 0.90088 1.54776 0.89361 1.18654 0.86855 0.84485 0.76080 1.90549 1.16319 1.88046 1.57278 1.45796 1.09222 1.04648 1.81082 1.21045 0.94420 0.83789 0.99013 1.20404 0.96024 0.93427 0.97365 0.87946 1.22283 0.98804 0.98721 0.96131 1.23327 1.01056 0.96126 0.99637 1.22965 0.80970 0.95647 0.96132 0.83717 1.23467 1.00403 0.98848 0.94405 1.22913 0.95837 0.94317 1.00205 0.86254 1.23334 0.96557 0.96509 0.87194 1.88694 1.22777 1.77176 1.43082 0.91558 0.77133 0.95309 0.94317 0.88171 0.86005 0.88128 0.88208 0.89629 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.28 11.83 21.83 0.26 -51.02 16 2 C 0.03 1.55 5.50 85.30 0.47 2.02 16 3 Si 1.00 41.22 29.56 68.60 2.03 43.25 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 7 C -0.57 -32.95 9.54 24.83 0.24 -32.71 16 8 H 0.09 4.51 7.85 -2.91 -0.02 4.48 16 9 C 0.54 31.72 7.75 86.36 0.67 32.39 16 10 O -0.63 -43.64 15.02 -4.30 -0.06 -43.70 16 11 N -0.75 -34.25 5.29 -467.39 -2.47 -36.72 16 12 C 0.14 5.57 4.57 86.38 0.39 5.96 16 13 C -0.05 -1.47 2.17 -11.57 -0.03 -1.49 16 14 H 0.10 2.48 8.14 -2.39 -0.02 2.47 16 15 C -0.14 -3.82 8.40 26.58 0.22 -3.60 16 16 C -0.18 -4.35 9.31 27.08 0.25 -4.10 16 17 C 0.10 2.05 4.99 30.98 0.15 2.20 16 18 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 19 C -0.13 -2.27 6.27 32.32 0.20 -2.07 16 20 C -0.11 -2.56 3.75 -9.30 -0.03 -2.60 16 21 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 22 C 0.04 1.10 6.79 72.41 0.49 1.60 16 23 O -0.40 -11.16 11.02 -148.98 -1.64 -12.80 16 24 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 25 H 0.39 15.33 7.87 -92.71 -0.73 14.60 16 26 H 0.03 1.28 6.11 -2.38 -0.01 1.27 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 2.89 7.54 -2.91 -0.02 2.87 16 29 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.10 1.47 7.92 -2.39 -0.02 1.45 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 33 H 0.05 1.58 5.46 -2.39 -0.01 1.57 16 Total: -1.00 -78.13 271.02 1.53 -76.59 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.39 Total: 26.80 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 3.03 Total: -2.40 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -2.21 Total: -87.74 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -1.71 Total: -56.50 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -78.13 1.53 -76.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154429270.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.811 kcal (2) G-P(sol) polarization free energy of solvation -78.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds