Wall clock time and date at job start Sun Mar 29 2020 21:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86796 * 119.99805 * 2 1 4 4 H 1.48503 * 109.47370 * 270.00053 * 3 2 1 5 5 H 1.48501 * 109.47421 * 30.00725 * 3 2 1 6 6 H 1.48506 * 109.46863 * 150.00176 * 3 2 1 7 7 C 1.40055 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99619 * 185.92618 * 7 2 1 9 9 C 1.41267 * 120.00077 * 6.19284 * 7 2 1 10 10 C 1.40721 * 120.15823 * 173.08272 * 9 7 2 11 11 N 1.31907 * 119.93158 * 179.75546 * 10 9 7 12 12 C 1.32161 * 120.26718 * 0.53085 * 11 10 9 13 13 C 1.39921 * 120.32184 * 359.72618 * 12 11 10 14 14 N 1.38830 * 119.96689 * 179.97438 * 13 12 11 15 15 C 1.46502 * 119.99927 * 0.02562 * 14 13 12 16 16 C 1.53785 * 113.61820 * 252.50198 * 15 14 13 17 17 C 1.53778 * 87.08086 * 220.02222 * 16 15 14 18 18 F 1.39905 * 113.61327 * 270.88361 * 17 16 15 19 19 C 1.53781 * 87.08348 * 25.43203 * 17 16 15 20 20 N 1.32260 * 120.06557 * 359.97438 * 13 12 11 21 21 H 0.97002 * 120.00083 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.03209 * 0.02562 * 10 9 7 23 23 H 1.07998 * 119.83534 * 179.75568 * 12 11 10 24 24 H 0.97002 * 120.00335 * 180.02562 * 14 13 12 25 25 H 1.09001 * 112.85048 * 23.81336 * 15 14 13 26 26 H 1.09004 * 113.60914 * 334.56908 * 16 15 14 27 27 H 1.08993 * 113.61489 * 105.47083 * 16 15 14 28 28 H 1.09000 * 113.69088 * 139.99327 * 17 16 15 29 29 H 1.09002 * 113.61080 * 220.02039 * 19 17 16 30 30 H 1.08995 * 113.69045 * 89.12963 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6526 0.7002 6 1 3.5389 1.4401 0.7000 7 6 2.0076 -1.2129 -0.0005 8 1 3.0833 -1.2154 0.0960 9 6 1.3075 -2.4327 -0.1331 10 6 2.0138 -3.6409 -0.2802 11 7 1.3555 -4.7778 -0.3987 12 6 0.0340 -4.7865 -0.3905 13 6 -0.6794 -3.5909 -0.2502 14 7 -2.0675 -3.6085 -0.2431 15 6 -2.7848 -4.8784 -0.3817 16 6 -3.4646 -5.0558 -1.7497 17 6 -4.6504 -5.6757 -0.9919 18 9 -4.5399 -7.0589 -0.8131 19 6 -4.1960 -4.8586 0.2290 20 7 -0.0325 -2.4442 -0.1245 21 1 -0.4850 0.8401 0.0004 22 1 3.0937 -3.6377 -0.2916 23 1 -0.4979 -5.7209 -0.4920 24 1 -2.5626 -2.7799 -0.1462 25 1 -2.1881 -5.7372 -0.0745 26 1 -3.7058 -4.1140 -2.2427 27 1 -2.9500 -5.7583 -2.4051 28 1 -5.6236 -5.3757 -1.3805 29 1 -4.2718 -5.4020 1.1709 30 1 -4.6366 -3.8629 0.2782 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154834617.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:55 Heat of formation + Delta-G solvation = 16.580732 kcal Electronic energy + Delta-G solvation = -16199.776077 eV Core-core repulsion = 13331.010554 eV Total energy + Delta-G solvation = -2868.765523 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.66434 -39.13139 -37.93908 -34.07992 -33.49601 -31.33919 -28.83154 -25.98076 -25.72615 -24.30160 -22.40469 -21.15273 -19.63768 -17.66333 -16.62009 -16.53655 -15.66510 -15.28710 -14.98303 -14.86162 -14.65202 -13.82319 -13.49102 -13.22271 -12.80869 -12.49724 -11.89646 -11.77262 -11.50447 -11.35235 -11.13361 -10.66861 -10.52616 -10.40289 -10.21549 -9.84163 -9.63049 -9.39660 -8.38475 -7.40210 -6.74471 -6.46674 -4.67106 2.68325 3.03038 3.06487 3.09746 3.26985 3.86116 4.01054 4.22809 4.28924 4.67653 4.68970 4.90581 4.96943 5.57187 5.63750 5.71717 5.85316 5.90938 5.99249 6.11636 6.29266 6.35267 6.55708 6.78508 7.02241 7.12381 7.58927 7.93528 8.03897 8.41557 8.54561 8.84004 9.40753 9.98567 10.17212 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.039365 B = 0.005963 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.120466 B = 4694.335575 C = 5268.238496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.068 3.932 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.091 0.909 9 C 0.245 3.755 10 C -0.107 4.107 11 N -0.407 5.407 12 C -0.170 4.170 13 C 0.371 3.629 14 N -0.718 5.718 15 C 0.147 3.853 16 C -0.180 4.180 17 C 0.064 3.936 18 F -0.199 7.199 19 C -0.170 4.170 20 N -0.508 5.508 21 H 0.274 0.726 22 H 0.130 0.870 23 H 0.121 0.879 24 H 0.397 0.603 25 H 0.110 0.890 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.472 -2.756 -1.088 8.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.449 4.449 8 H 0.109 0.891 9 C 0.117 3.883 10 C -0.277 4.277 11 N -0.119 5.119 12 C -0.332 4.332 13 C 0.128 3.872 14 N -0.353 5.353 15 C 0.039 3.961 16 C -0.220 4.220 17 C 0.028 3.972 18 F -0.180 7.180 19 C -0.209 4.209 20 N -0.234 5.234 21 H 0.085 0.915 22 H 0.148 0.852 23 H 0.138 0.862 24 H 0.232 0.768 25 H 0.128 0.872 26 H 0.118 0.882 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.678 -2.864 -1.082 9.203 hybrid contribution 0.082 0.997 -0.003 1.001 sum -8.596 -1.867 -1.085 8.863 Atomic orbital electron populations 1.70111 1.07380 1.27986 1.27698 1.26134 0.94943 1.01335 0.93428 0.86259 0.80494 0.80374 0.79344 1.19297 1.20129 1.18325 1.19629 0.94921 0.89246 1.41090 0.89137 1.19104 0.87706 0.93253 0.88242 1.22926 0.99007 0.89358 1.16438 1.67517 1.08227 1.30093 1.06015 1.21959 0.90744 0.95889 1.24586 1.19536 0.85160 0.92033 0.90461 1.44079 1.02584 1.07140 1.81455 1.22228 0.90956 0.88921 0.94006 1.24230 0.96329 1.02132 0.99286 1.22227 1.00119 0.75934 0.98964 1.92808 1.97508 1.31455 1.96217 1.24004 0.97199 1.01375 0.98324 1.69041 1.08408 1.22275 1.23715 0.91518 0.85232 0.86189 0.76767 0.87219 0.88156 0.90064 0.88511 0.89862 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.18 11.51 55.55 0.64 -17.54 16 2 C 0.07 1.67 5.49 -17.34 -0.10 1.58 16 3 Si 0.91 17.93 29.56 -169.99 -5.03 12.90 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.42 -10.86 9.15 -37.75 -0.35 -11.21 16 8 H 0.09 2.18 7.85 -52.49 -0.41 1.76 16 9 C 0.24 6.74 6.54 -84.83 -0.55 6.18 16 10 C -0.11 -2.80 10.97 -16.58 -0.18 -2.98 16 11 N -0.41 -10.52 10.47 -12.11 -0.13 -10.65 16 12 C -0.17 -4.14 10.45 -16.78 -0.18 -4.31 16 13 C 0.37 8.98 7.66 -155.01 -1.19 7.80 16 14 N -0.72 -13.68 5.52 -53.00 -0.29 -13.98 16 15 C 0.15 2.22 4.01 -67.11 -0.27 1.95 16 16 C -0.18 -2.31 7.77 -25.92 -0.20 -2.51 16 17 C 0.06 0.72 5.69 -25.92 -0.15 0.57 16 18 F -0.20 -2.65 17.38 2.25 0.04 -2.61 16 19 C -0.17 -1.98 7.73 -25.92 -0.20 -2.18 16 20 N -0.51 -13.83 8.10 -10.14 -0.08 -13.91 16 21 H 0.27 6.31 8.29 -40.82 -0.34 5.97 16 22 H 0.13 3.08 8.06 -52.49 -0.42 2.66 16 23 H 0.12 2.60 6.03 -52.49 -0.32 2.28 16 24 H 0.40 7.35 8.85 -40.82 -0.36 6.99 16 25 H 0.11 1.77 6.11 -51.93 -0.32 1.45 16 26 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.10 1.05 8.12 -51.93 -0.42 0.63 16 LS Contribution 265.21 15.07 4.00 4.00 Total: -1.00 -29.83 265.21 -7.29 -37.12 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -3.08 Total: 9.79 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -3.36 Total: -5.12 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.14 Total: -56.08 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.83 -7.29 -37.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154834617.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.699 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds