Wall clock time and date at job start Sun Mar 29 2020 21:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86796 * 119.99805 * 2 1 4 4 H 1.48503 * 109.47370 * 270.00053 * 3 2 1 5 5 H 1.48501 * 109.47421 * 30.00725 * 3 2 1 6 6 H 1.48506 * 109.46863 * 150.00176 * 3 2 1 7 7 C 1.40055 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99619 * 185.92618 * 7 2 1 9 9 C 1.41267 * 120.00077 * 6.19284 * 7 2 1 10 10 C 1.40721 * 120.15823 * 173.08272 * 9 7 2 11 11 N 1.31907 * 119.93158 * 179.75546 * 10 9 7 12 12 C 1.32161 * 120.26718 * 0.53085 * 11 10 9 13 13 C 1.39921 * 120.32184 * 359.72618 * 12 11 10 14 14 N 1.38830 * 119.96689 * 179.97438 * 13 12 11 15 15 C 1.46502 * 119.99927 * 0.02562 * 14 13 12 16 16 C 1.53785 * 113.61820 * 252.50198 * 15 14 13 17 17 C 1.53778 * 87.08086 * 220.02222 * 16 15 14 18 18 F 1.39905 * 113.61327 * 270.88361 * 17 16 15 19 19 C 1.53781 * 87.08348 * 25.43203 * 17 16 15 20 20 N 1.32260 * 120.06557 * 359.97438 * 13 12 11 21 21 H 0.97002 * 120.00083 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.03209 * 0.02562 * 10 9 7 23 23 H 1.07998 * 119.83534 * 179.75568 * 12 11 10 24 24 H 0.97002 * 120.00335 * 180.02562 * 14 13 12 25 25 H 1.09001 * 112.85048 * 23.81336 * 15 14 13 26 26 H 1.09004 * 113.60914 * 334.56908 * 16 15 14 27 27 H 1.08993 * 113.61489 * 105.47083 * 16 15 14 28 28 H 1.09000 * 113.69088 * 139.99327 * 17 16 15 29 29 H 1.09002 * 113.61080 * 220.02039 * 19 17 16 30 30 H 1.08995 * 113.69045 * 89.12963 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6526 0.7002 6 1 3.5389 1.4401 0.7000 7 6 2.0076 -1.2129 -0.0005 8 1 3.0833 -1.2154 0.0960 9 6 1.3075 -2.4327 -0.1331 10 6 2.0138 -3.6409 -0.2802 11 7 1.3555 -4.7778 -0.3987 12 6 0.0340 -4.7865 -0.3905 13 6 -0.6794 -3.5909 -0.2502 14 7 -2.0675 -3.6085 -0.2431 15 6 -2.7848 -4.8784 -0.3817 16 6 -3.4646 -5.0558 -1.7497 17 6 -4.6504 -5.6757 -0.9919 18 9 -4.5399 -7.0589 -0.8131 19 6 -4.1960 -4.8586 0.2290 20 7 -0.0325 -2.4442 -0.1245 21 1 -0.4850 0.8401 0.0004 22 1 3.0937 -3.6377 -0.2916 23 1 -0.4979 -5.7209 -0.4920 24 1 -2.5626 -2.7799 -0.1462 25 1 -2.1881 -5.7372 -0.0745 26 1 -3.7058 -4.1140 -2.2427 27 1 -2.9500 -5.7583 -2.4051 28 1 -5.6236 -5.3757 -1.3805 29 1 -4.2718 -5.4020 1.1709 30 1 -4.6366 -3.8629 0.2782 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154834617.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:55 Heat of formation + Delta-G solvation = -2.481787 kcal Electronic energy + Delta-G solvation = -16200.602690 eV Core-core repulsion = 13331.010554 eV Total energy + Delta-G solvation = -2869.592135 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.64590 -40.89468 -39.25761 -35.91737 -35.18211 -33.21782 -30.63544 -27.80437 -26.81684 -25.56123 -24.30776 -22.89713 -20.80276 -19.42386 -18.31797 -17.85087 -17.10079 -16.78471 -16.50241 -16.36953 -15.95482 -15.26175 -15.04922 -14.87713 -14.23248 -13.64277 -13.36491 -13.27116 -13.08423 -12.87726 -12.71897 -12.33839 -12.00508 -11.77507 -11.55272 -11.38049 -11.28480 -11.18032 -10.23770 -9.33386 -8.48975 -8.34006 -6.64607 0.82343 1.24637 1.43221 1.56582 1.57985 2.21718 2.50207 2.82232 3.23864 3.31767 3.70401 3.75158 3.95687 4.02931 4.16123 4.41231 4.47734 4.69116 4.69452 4.76533 4.88863 4.96095 4.96988 5.14927 5.20295 5.36563 5.70958 6.09323 6.24191 6.64680 6.69229 7.00777 7.45232 8.06511 8.34713 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.039365 B = 0.005963 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.120466 B = 4694.335575 C = 5268.238496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.024 3.976 3 Si 0.994 3.006 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.440 4.440 8 H 0.101 0.899 9 C 0.214 3.786 10 C -0.135 4.135 11 N -0.418 5.418 12 C -0.181 4.181 13 C 0.367 3.633 14 N -0.706 5.706 15 C 0.123 3.877 16 C -0.176 4.176 17 C 0.076 3.924 18 F -0.212 7.212 19 C -0.156 4.156 20 N -0.538 5.538 21 H 0.283 0.717 22 H 0.142 0.858 23 H 0.142 0.858 24 H 0.400 0.600 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.740 -1.830 -1.209 9.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.200 4.200 3 Si 0.814 3.186 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.473 4.473 8 H 0.119 0.881 9 C 0.087 3.913 10 C -0.304 4.304 11 N -0.129 5.129 12 C -0.343 4.343 13 C 0.121 3.879 14 N -0.340 5.340 15 C 0.017 3.983 16 C -0.215 4.215 17 C 0.039 3.961 18 F -0.193 7.193 19 C -0.194 4.194 20 N -0.266 5.266 21 H 0.094 0.906 22 H 0.159 0.841 23 H 0.159 0.841 24 H 0.236 0.764 25 H 0.113 0.887 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.153 0.847 29 H 0.106 0.894 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.978 -1.980 -1.204 10.244 hybrid contribution 0.375 0.639 0.033 0.741 sum -9.604 -1.341 -1.171 9.767 Atomic orbital electron populations 1.70180 1.09044 1.29629 1.27402 1.27096 0.95819 1.04733 0.92355 0.85021 0.79062 0.75038 0.79493 1.18798 1.19134 1.17595 1.20059 0.95712 0.89949 1.41531 0.88126 1.19548 0.88470 0.94287 0.89012 1.23086 0.99684 0.89371 1.18276 1.67501 1.09100 1.30156 1.06162 1.22349 0.90567 0.97001 1.24420 1.19859 0.87191 0.91391 0.89416 1.44216 1.00713 1.08869 1.80160 1.22630 0.92182 0.86641 0.96830 1.24186 0.96796 1.02645 0.97890 1.22310 1.00998 0.74908 0.97862 1.92791 1.97616 1.32674 1.96216 1.23971 0.94074 1.02667 0.98731 1.69064 1.08579 1.23577 1.25387 0.90606 0.84065 0.84052 0.76426 0.88686 0.87243 0.90843 0.84717 0.89430 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.98 11.51 21.84 0.25 -37.73 16 2 C 0.02 1.15 5.49 85.30 0.47 1.62 16 3 Si 0.99 36.11 29.56 68.60 2.03 38.14 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 5 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 6 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 7 C -0.44 -23.31 9.15 23.46 0.21 -23.10 16 8 H 0.10 4.89 7.85 -2.91 -0.02 4.87 16 9 C 0.21 12.12 6.54 40.16 0.26 12.38 16 10 C -0.14 -7.28 10.97 85.29 0.94 -6.34 16 11 N -0.42 -22.05 10.47 -192.23 -2.01 -24.06 16 12 C -0.18 -8.91 10.45 85.05 0.89 -8.02 16 13 C 0.37 17.98 7.66 133.36 1.02 19.00 16 14 N -0.71 -26.59 5.52 -321.60 -1.78 -28.36 16 15 C 0.12 3.57 4.01 45.52 0.18 3.76 16 16 C -0.18 -4.16 7.77 31.12 0.24 -3.92 16 17 C 0.08 1.45 5.69 31.12 0.18 1.62 16 18 F -0.21 -5.17 17.38 44.97 0.78 -4.39 16 19 C -0.16 -3.21 7.73 31.12 0.24 -2.97 16 20 N -0.54 -29.91 8.10 -186.00 -1.51 -31.42 16 21 H 0.28 12.93 8.29 -92.71 -0.77 12.16 16 22 H 0.14 6.94 8.06 -2.91 -0.02 6.92 16 23 H 0.14 6.15 6.03 -2.91 -0.02 6.13 16 24 H 0.40 14.53 8.85 -92.71 -0.82 13.71 16 25 H 0.10 3.03 6.11 -2.39 -0.01 3.01 16 26 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.12 2.07 8.12 -2.39 -0.02 2.05 16 Total: -1.00 -65.24 265.21 2.76 -62.48 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.36 Total: 31.32 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 4.63 Total: -5.98 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -5.04 Total: -121.57 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.78 Total: -4.39 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -65.24 2.76 -62.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154834617.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.998 kcal (2) G-P(sol) polarization free energy of solvation -65.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds