Wall clock time and date at job start Sun Mar 29 2020 22:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00140 * 2 1 4 4 O 1.42894 * 109.47023 * 75.00215 * 3 2 1 5 5 C 1.35946 * 117.00080 * 74.99995 * 4 3 2 6 6 C 1.38527 * 120.09376 * 0.02562 * 5 4 3 7 7 C 1.38264 * 120.03048 * 179.97438 * 6 5 4 8 8 C 1.38345 * 120.22708 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.90154 * 180.02562 * 8 7 6 10 10 C 1.38109 * 120.19321 * 359.75275 * 8 7 6 11 11 C 1.38957 * 119.95963 * 0.48155 * 10 8 7 12 12 N 1.39415 * 120.10857 * 179.79040 * 11 10 8 13 13 C 1.36804 * 120.00153 * 359.72797 * 12 11 10 14 14 H 1.07999 * 119.99913 * 359.97438 * 13 12 11 15 15 C 1.38765 * 120.00201 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00453 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46867 * 90.00386 * 17 15 13 19 19 H 1.48499 * 109.47135 * 210.00188 * 17 15 13 20 20 H 1.48501 * 109.47216 * 330.00529 * 17 15 13 21 21 H 1.09005 * 109.46797 * 299.99877 * 1 2 3 22 22 H 1.08994 * 109.47350 * 59.99722 * 1 2 3 23 23 H 1.08997 * 109.47275 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46842 * 315.00338 * 3 2 1 25 25 H 1.08995 * 109.46858 * 195.00589 * 3 2 1 26 26 H 1.07996 * 119.97830 * 359.97225 * 6 5 4 27 27 H 1.08007 * 119.87966 * 180.02562 * 7 6 5 28 28 H 1.08998 * 109.46984 * 90.00646 * 9 8 7 29 29 H 1.09000 * 109.46955 * 210.00105 * 9 8 7 30 30 H 1.09002 * 109.47120 * 330.00532 * 9 8 7 31 31 H 1.07995 * 120.02081 * 180.25419 * 10 8 7 32 32 H 0.97004 * 119.99610 * 179.44998 * 12 11 10 33 33 H 0.97000 * 120.00704 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 1.8855 1.8824 1.3013 5 6 2.7191 1.4128 2.2671 6 6 3.6374 0.4193 1.9693 7 6 4.4849 -0.0569 2.9524 8 6 4.4199 0.4551 4.2360 9 6 5.3476 -0.0689 5.3018 10 6 3.5111 1.4490 4.5421 11 6 2.6522 1.9300 3.5613 12 7 1.7307 2.9302 3.8680 13 6 1.6671 3.4358 5.1376 14 1 2.3306 3.0599 5.9024 15 6 0.7495 4.4310 5.4430 16 7 0.6880 4.9172 6.6645 17 14 -0.3985 5.0807 4.1203 18 1 -1.6474 4.2773 4.1106 19 1 -0.7260 6.5012 4.4032 20 1 0.2651 4.9800 2.7957 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.4941 1.9329 -0.7267 25 1 3.0648 1.2335 -0.2661 26 1 3.6911 0.0165 0.9687 27 1 5.2002 -0.8313 2.7174 28 1 6.2640 0.5213 5.3081 29 1 4.8616 0.0044 6.2747 30 1 5.5883 -1.1114 5.0935 31 1 3.4656 1.8496 5.5440 32 1 1.1373 3.2703 3.1801 33 1 0.0468 5.6131 6.8779 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186475.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:10 Heat of formation + Delta-G solvation = -76.785975 kcal Electronic energy + Delta-G solvation = -16839.108383 eV Core-core repulsion = 14057.461730 eV Total energy + Delta-G solvation = -2781.646653 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14258 -39.27578 -37.30050 -36.98457 -34.04475 -32.37084 -30.29728 -28.68367 -27.51966 -26.13973 -25.66787 -22.68401 -21.98179 -20.06824 -19.02843 -17.91349 -17.73982 -17.16346 -16.46571 -16.14374 -15.66762 -15.11102 -15.05495 -14.85611 -14.49245 -14.25490 -14.03661 -13.86063 -13.49586 -12.87524 -12.79036 -12.49793 -12.42220 -12.30671 -12.05416 -11.82325 -11.59193 -11.55465 -11.04824 -10.67392 -9.17128 -8.41268 -8.36728 -5.72000 0.71845 0.86435 1.25094 1.30608 1.34508 2.18975 2.45686 2.78913 2.91229 3.19289 3.31783 4.04631 4.15141 4.24831 4.32098 4.47638 4.49700 4.60593 4.66435 4.80366 4.82664 4.95027 5.02141 5.19925 5.31485 5.33981 5.60210 5.70859 5.87137 5.94390 6.06363 6.21843 6.60378 6.76050 7.42854 7.49250 8.74786 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.017025 B = 0.010191 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.216136 B = 2746.853689 C = 4186.316163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.207 3.793 4 O -0.358 6.358 5 C 0.001 3.999 6 C -0.133 4.133 7 C -0.187 4.187 8 C -0.067 4.067 9 C -0.104 4.104 10 C -0.214 4.214 11 C 0.179 3.821 12 N -0.614 5.614 13 C -0.299 4.299 14 H 0.085 0.915 15 C -0.021 4.021 16 N -0.936 5.936 17 Si 0.947 3.053 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.255 1.255 21 H 0.027 0.973 22 H 0.066 0.934 23 H 0.099 0.901 24 H 0.124 0.876 25 H 0.114 0.886 26 H 0.143 0.857 27 H 0.140 0.860 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.383 0.617 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 -8.843 -13.801 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C 0.095 3.905 4 O -0.275 6.275 5 C -0.047 4.047 6 C -0.152 4.152 7 C -0.208 4.208 8 C -0.067 4.067 9 C -0.160 4.160 10 C -0.239 4.239 11 C 0.067 3.933 12 N -0.227 5.227 13 C -0.429 4.429 14 H 0.103 0.897 15 C -0.218 4.218 16 N -0.577 5.577 17 Si 0.770 3.230 18 H -0.191 1.191 19 H -0.197 1.197 20 H -0.179 1.179 21 H 0.045 0.955 22 H 0.084 0.916 23 H 0.117 0.883 24 H 0.142 0.858 25 H 0.131 0.869 26 H 0.161 0.839 27 H 0.158 0.842 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.218 0.782 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.951 -8.581 -13.427 16.206 hybrid contribution -1.068 0.952 -0.215 1.447 sum 1.883 -7.629 -13.643 15.744 Atomic orbital electron populations 1.22910 0.79726 1.03785 1.00521 1.87987 1.21819 1.29568 1.93688 1.24446 1.00735 0.83233 0.82091 1.86050 1.58699 1.61766 1.21009 1.18318 0.97599 1.01414 0.87368 1.21029 0.96368 0.96998 1.00845 1.20614 1.03412 1.04680 0.92127 1.19847 0.95960 0.94866 0.96071 1.20734 0.97735 1.01648 0.95895 1.20350 1.01437 1.03834 0.98254 1.17613 0.92659 0.91489 0.91532 1.40771 1.35671 1.36477 1.09798 1.19253 1.18850 1.17821 0.86954 0.89713 1.25685 0.99786 0.97501 0.98863 1.69824 1.38105 1.29539 1.20223 0.85567 0.79400 0.78693 0.79307 1.19069 1.19689 1.17925 0.95461 0.91572 0.88253 0.85827 0.86892 0.83939 0.84177 0.90627 0.92608 0.89717 0.87962 0.78207 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.89 113.37 1.23 1.83 16 2 O -0.41 -10.99 10.19 -126.21 -1.29 -12.28 16 3 C 0.21 5.28 6.39 113.37 0.72 6.01 16 4 O -0.36 -13.07 9.44 -70.18 -0.66 -13.73 16 5 C 0.00 0.04 6.65 22.65 0.15 0.19 16 6 C -0.13 -4.53 8.78 22.34 0.20 -4.34 16 7 C -0.19 -6.13 9.69 22.30 0.22 -5.91 16 8 C -0.07 -2.43 5.88 -19.87 -0.12 -2.55 16 9 C -0.10 -2.92 10.01 71.24 0.71 -2.21 16 10 C -0.21 -9.68 8.95 22.41 0.20 -9.48 16 11 C 0.18 8.47 6.63 38.42 0.25 8.72 16 12 N -0.61 -31.59 5.23 -184.01 -0.96 -32.55 16 13 C -0.30 -17.25 10.04 84.04 0.84 -16.41 16 14 H 0.09 5.26 5.91 -2.91 -0.02 5.25 16 15 C -0.02 -1.18 5.50 84.85 0.47 -0.71 16 16 N -0.94 -56.50 13.97 21.64 0.30 -56.20 16 17 Si 0.95 43.18 27.74 68.60 1.90 45.09 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.25 -10.95 6.51 99.48 0.65 -10.30 16 21 H 0.03 0.73 8.03 -2.38 -0.02 0.71 16 22 H 0.07 1.12 8.11 -2.39 -0.02 1.10 16 23 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.12 2.35 8.01 -2.38 -0.02 2.33 16 25 H 0.11 2.44 6.70 -2.39 -0.02 2.43 16 26 H 0.14 4.03 5.85 -2.91 -0.02 4.02 16 27 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 1.62 8.08 -2.39 -0.02 1.60 16 30 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16 31 H 0.10 5.05 5.96 -2.91 -0.02 5.03 16 32 H 0.38 18.83 5.11 -92.71 -0.47 18.36 16 33 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -67.20 279.22 4.77 -62.43 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.59 Total: 32.10 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 4.88 Total: -24.86 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -0.66 Total: -88.75 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.95 Total: -26.01 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.90 Total: 45.09 kcal Total: -67.20 4.77 -62.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186475.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.353 kcal (2) G-P(sol) polarization free energy of solvation -67.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds