Wall clock time and date at job start Sun Mar 29 2020 22:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36026 * 117.00171 * 2 1 4 4 C 1.38640 * 119.98204 * 359.97438 * 3 2 1 5 5 C 1.38098 * 120.08319 * 179.97438 * 4 3 2 6 6 C 1.39081 * 120.05975 * 0.02562 * 5 4 3 7 7 N 1.39381 * 120.01685 * 180.02562 * 6 5 4 8 8 C 1.36839 * 120.00222 * 359.97438 * 7 6 5 9 9 H 1.08006 * 119.99754 * 0.02562 * 8 7 6 10 10 C 1.38750 * 120.00376 * 180.02562 * 8 7 6 11 11 N 1.31626 * 119.99774 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00101 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47277 * 60.00235 * 12 10 8 14 14 H 1.48498 * 109.47300 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47182 * 300.00081 * 12 10 8 16 16 C 1.39051 * 119.96932 * 359.97438 * 6 5 4 17 17 C 1.50692 * 120.04598 * 179.97438 * 16 6 5 18 18 C 1.38420 * 119.90931 * 359.70600 * 16 6 5 19 19 O 1.35983 * 120.02691 * 180.29159 * 18 16 6 20 20 C 1.42898 * 117.00072 * 270.27489 * 19 18 16 21 21 H 1.09002 * 109.47382 * 300.00216 * 1 2 3 22 22 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46926 * 60.00324 * 1 2 3 24 24 H 1.08000 * 119.95622 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.96864 * 180.02562 * 5 4 3 26 26 H 0.97001 * 120.00404 * 179.97438 * 7 6 5 27 27 H 0.96996 * 119.99867 * 179.97438 * 11 10 8 28 28 H 1.08997 * 109.47121 * 90.00170 * 17 16 6 29 29 H 1.09000 * 109.47265 * 209.99978 * 17 16 6 30 30 H 1.09001 * 109.46995 * 330.00193 * 17 16 6 31 31 H 1.09000 * 109.47444 * 179.97438 * 20 19 18 32 32 H 1.09001 * 109.47230 * 300.00098 * 20 19 18 33 33 H 1.09008 * 109.47329 * 60.00590 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2912 2.3745 -0.0005 5 6 1.9160 3.6061 0.0000 6 6 3.3047 3.6827 0.0005 7 7 3.9344 4.9262 0.0016 8 6 3.1863 6.0720 0.0016 9 1 2.1079 6.0128 0.0012 10 6 3.8131 7.3098 0.0021 11 7 5.1274 7.3819 0.0032 12 14 2.7919 8.8738 0.0014 13 1 1.9342 8.9056 1.2133 14 1 3.6935 10.0538 0.0028 15 1 1.9360 8.9056 -1.2118 16 6 4.0646 2.5182 0.0011 17 6 5.5694 2.5993 0.0011 18 6 3.4371 1.2845 0.0072 19 8 4.1779 0.1442 0.0138 20 6 4.5373 -0.4033 -1.2563 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 0.2127 2.3168 -0.0014 25 1 1.3257 4.5105 0.0000 26 1 4.9029 4.9794 0.0024 27 1 5.5656 8.2473 0.0032 28 1 5.9322 2.6192 1.0287 29 1 5.9801 1.7299 -0.5123 30 1 5.8843 3.5073 -0.5131 31 1 5.1257 -1.3088 -1.1084 32 1 3.6340 -0.6440 -1.8169 33 1 5.1268 0.3257 -1.8126 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187126.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:16 Heat of formation + Delta-G solvation = -47.238493 kcal Electronic energy + Delta-G solvation = -16868.544413 eV Core-core repulsion = 14088.179035 eV Total energy + Delta-G solvation = -2780.365378 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.69537 -37.54210 -37.09985 -34.20741 -31.84025 -31.07115 -28.51675 -26.85587 -26.27182 -25.33463 -24.49314 -21.03211 -20.33638 -17.94381 -17.43697 -16.55523 -15.67164 -15.42957 -15.18640 -14.58148 -14.34709 -14.14222 -13.82048 -13.05588 -12.91651 -12.56394 -12.07700 -11.75519 -11.55274 -11.51988 -11.32228 -11.26846 -11.13017 -10.85064 -10.64349 -10.37883 -9.90385 -9.59173 -9.33646 -8.52112 -7.77801 -6.55782 -6.45783 -3.72057 2.07555 2.47246 3.15389 3.15935 3.17423 4.00848 4.03627 4.24787 4.66482 5.16084 5.29258 5.44837 5.52488 5.58716 5.68866 5.73545 5.78312 5.85223 5.94640 6.09582 6.15634 6.29184 6.40472 6.56980 6.80190 7.05281 7.15870 7.36628 7.39942 7.45620 7.78562 7.89628 8.47372 8.76121 9.35101 9.55185 10.61307 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.006877 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.286246 B = 4070.515216 C = 4861.729233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.321 6.321 3 C -0.020 4.020 4 C -0.132 4.132 5 C -0.193 4.193 6 C 0.200 3.800 7 N -0.561 5.561 8 C -0.300 4.300 9 H 0.100 0.900 10 C 0.019 3.981 11 N -0.895 5.895 12 Si 0.931 3.069 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.273 1.273 16 C -0.195 4.195 17 C -0.089 4.089 18 C 0.124 3.876 19 O -0.331 6.331 20 C 0.040 3.960 21 H 0.045 0.955 22 H 0.085 0.915 23 H 0.044 0.956 24 H 0.113 0.887 25 H 0.121 0.879 26 H 0.401 0.599 27 H 0.275 0.725 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 -9.078 -1.796 10.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.236 6.236 3 C -0.067 4.067 4 C -0.152 4.152 5 C -0.218 4.218 6 C 0.080 3.920 7 N -0.167 5.167 8 C -0.430 4.430 9 H 0.118 0.882 10 C -0.184 4.184 11 N -0.533 5.533 12 Si 0.758 3.242 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.198 1.198 16 C -0.203 4.203 17 C -0.146 4.146 18 C 0.079 3.921 19 O -0.247 6.247 20 C -0.055 4.055 21 H 0.063 0.937 22 H 0.103 0.897 23 H 0.062 0.938 24 H 0.131 0.869 25 H 0.139 0.861 26 H 0.237 0.763 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.888 -8.863 -1.644 9.817 hybrid contribution -0.436 1.152 -0.223 1.252 sum -4.324 -7.710 -1.867 9.035 Atomic orbital electron populations 1.22790 0.80722 1.02191 1.00456 1.86001 1.19218 1.27273 1.91118 1.18646 0.90938 0.83994 1.13094 1.20650 0.98240 0.91772 1.04522 1.20284 0.92864 0.96693 1.11923 1.17430 0.91509 0.85381 0.97689 1.40997 1.08426 1.01239 1.66017 1.19653 0.92424 0.83346 1.47557 0.88211 1.25255 0.96012 0.99492 0.97665 1.69684 1.07745 1.26699 1.49135 0.85902 0.79042 0.80281 0.79001 1.19820 1.20756 1.19846 1.19005 0.95347 0.90526 1.15401 1.20328 0.91679 1.01224 1.01346 1.17274 0.85774 0.84794 1.04226 1.85987 1.71073 1.39354 1.28311 1.22825 0.99236 0.97765 0.85681 0.93666 0.89674 0.93780 0.86867 0.86088 0.76275 0.91551 0.92363 0.92535 0.92391 0.89954 0.94010 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 16 2 O -0.32 -5.91 10.28 -34.42 -0.35 -6.26 16 3 C -0.02 -0.40 6.70 -39.06 -0.26 -0.66 16 4 C -0.13 -2.57 9.03 -39.48 -0.36 -2.92 16 5 C -0.19 -4.17 9.30 -39.32 -0.37 -4.53 16 6 C 0.20 4.61 6.60 -83.81 -0.55 4.05 16 7 N -0.56 -13.92 5.34 -9.60 -0.05 -13.97 16 8 C -0.30 -7.70 9.55 -15.13 -0.14 -7.85 16 9 H 0.10 2.44 5.67 -52.48 -0.30 2.15 16 10 C 0.02 0.47 5.50 -17.45 -0.10 0.38 16 11 N -0.89 -23.95 13.05 55.49 0.72 -23.22 16 12 Si 0.93 19.84 29.55 -169.99 -5.02 14.81 16 13 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 16 C -0.20 -4.19 5.91 -104.26 -0.62 -4.81 16 17 C -0.09 -1.69 9.34 36.00 0.34 -1.35 16 18 C 0.12 2.59 5.71 -39.14 -0.22 2.36 16 19 O -0.33 -6.40 9.42 -34.29 -0.32 -6.72 16 20 C 0.04 0.60 10.76 101.05 1.09 1.68 16 21 H 0.04 0.57 7.66 -51.93 -0.40 0.17 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.04 0.55 7.66 -51.93 -0.40 0.15 16 24 H 0.11 1.86 6.28 -52.49 -0.33 1.53 16 25 H 0.12 2.56 5.95 -52.48 -0.31 2.25 16 26 H 0.40 10.06 5.88 -40.82 -0.24 9.82 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.96 6.29 -51.93 -0.33 0.64 16 30 H 0.06 1.12 6.55 -51.93 -0.34 0.78 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.04 0.59 7.22 -51.92 -0.38 0.22 16 LS Contribution 277.20 15.07 4.18 4.18 Total: -1.00 -28.50 277.20 -4.89 -33.39 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -3.84 Total: 9.99 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -0.20 Total: -12.19 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.67 Total: -37.19 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.68 Total: -12.98 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.50 -4.89 -33.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187126.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.844 kcal (2) G-P(sol) polarization free energy of solvation -28.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds