Wall clock time and date at job start Sun Mar 29 2020 22:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36026 * 117.00171 * 2 1 4 4 C 1.38640 * 119.98204 * 359.97438 * 3 2 1 5 5 C 1.38098 * 120.08319 * 179.97438 * 4 3 2 6 6 C 1.39081 * 120.05975 * 0.02562 * 5 4 3 7 7 N 1.39381 * 120.01685 * 180.02562 * 6 5 4 8 8 C 1.36839 * 120.00222 * 359.97438 * 7 6 5 9 9 H 1.08006 * 119.99754 * 0.02562 * 8 7 6 10 10 C 1.38750 * 120.00376 * 180.02562 * 8 7 6 11 11 N 1.31626 * 119.99774 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00101 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47277 * 60.00235 * 12 10 8 14 14 H 1.48498 * 109.47300 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47182 * 300.00081 * 12 10 8 16 16 C 1.39051 * 119.96932 * 359.97438 * 6 5 4 17 17 C 1.50692 * 120.04598 * 179.97438 * 16 6 5 18 18 C 1.38420 * 119.90931 * 359.70600 * 16 6 5 19 19 O 1.35983 * 120.02691 * 180.29159 * 18 16 6 20 20 C 1.42898 * 117.00072 * 270.27489 * 19 18 16 21 21 H 1.09002 * 109.47382 * 300.00216 * 1 2 3 22 22 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46926 * 60.00324 * 1 2 3 24 24 H 1.08000 * 119.95622 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.96864 * 180.02562 * 5 4 3 26 26 H 0.97001 * 120.00404 * 179.97438 * 7 6 5 27 27 H 0.96996 * 119.99867 * 179.97438 * 11 10 8 28 28 H 1.08997 * 109.47121 * 90.00170 * 17 16 6 29 29 H 1.09000 * 109.47265 * 209.99978 * 17 16 6 30 30 H 1.09001 * 109.46995 * 330.00193 * 17 16 6 31 31 H 1.09000 * 109.47444 * 179.97438 * 20 19 18 32 32 H 1.09001 * 109.47230 * 300.00098 * 20 19 18 33 33 H 1.09008 * 109.47329 * 60.00590 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2912 2.3745 -0.0005 5 6 1.9160 3.6061 0.0000 6 6 3.3047 3.6827 0.0005 7 7 3.9344 4.9262 0.0016 8 6 3.1863 6.0720 0.0016 9 1 2.1079 6.0128 0.0012 10 6 3.8131 7.3098 0.0021 11 7 5.1274 7.3819 0.0032 12 14 2.7919 8.8738 0.0014 13 1 1.9342 8.9056 1.2133 14 1 3.6935 10.0538 0.0028 15 1 1.9360 8.9056 -1.2118 16 6 4.0646 2.5182 0.0011 17 6 5.5694 2.5993 0.0011 18 6 3.4371 1.2845 0.0072 19 8 4.1779 0.1442 0.0138 20 6 4.5373 -0.4033 -1.2563 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 0.2127 2.3168 -0.0014 25 1 1.3257 4.5105 0.0000 26 1 4.9029 4.9794 0.0024 27 1 5.5656 8.2473 0.0032 28 1 5.9322 2.6192 1.0287 29 1 5.9801 1.7299 -0.5123 30 1 5.8843 3.5073 -0.5131 31 1 5.1257 -1.3088 -1.1084 32 1 3.6340 -0.6440 -1.8169 33 1 5.1268 0.3257 -1.8126 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187126.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:15 Heat of formation + Delta-G solvation = -64.543907 kcal Electronic energy + Delta-G solvation = -16869.294832 eV Core-core repulsion = 14088.179035 eV Total energy + Delta-G solvation = -2781.115797 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25843 -39.00744 -38.68486 -35.91906 -33.55248 -32.74303 -29.97837 -28.08700 -27.89405 -26.74368 -26.27615 -22.68126 -21.90267 -19.72455 -18.96737 -18.07010 -17.30415 -16.96625 -16.66857 -16.07566 -15.85432 -15.56093 -15.44382 -14.53844 -14.45987 -14.09855 -13.61833 -13.36788 -13.23087 -12.93611 -12.84390 -12.76967 -12.47994 -12.33837 -12.24364 -12.07450 -11.51368 -11.23822 -10.78915 -10.27711 -9.38799 -8.42162 -8.17897 -5.64393 0.44882 0.83238 1.43163 1.50304 1.53512 2.30407 2.63315 2.71952 3.03470 3.33646 3.55906 4.07719 4.25688 4.39430 4.47159 4.51545 4.56834 4.59140 4.64898 4.73230 4.78555 4.80399 4.85679 4.95075 5.24479 5.31307 5.43803 5.63971 5.72672 5.79423 6.00233 6.45614 6.87237 6.96322 7.55700 7.69923 8.76688 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.006877 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.286246 B = 4070.515216 C = 4861.729233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.335 6.335 3 C -0.009 4.009 4 C -0.128 4.128 5 C -0.204 4.204 6 C 0.182 3.818 7 N -0.587 5.587 8 C -0.315 4.315 9 H 0.104 0.896 10 C -0.033 4.033 11 N -0.935 5.935 12 Si 0.996 3.004 13 H -0.267 1.267 14 H -0.283 1.283 15 H -0.266 1.266 16 C -0.203 4.203 17 C -0.084 4.084 18 C 0.112 3.888 19 O -0.344 6.344 20 C 0.034 3.966 21 H 0.054 0.946 22 H 0.116 0.884 23 H 0.056 0.944 24 H 0.147 0.853 25 H 0.121 0.879 26 H 0.393 0.607 27 H 0.273 0.727 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.115 0.885 32 H 0.042 0.958 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 -10.709 -2.021 12.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.250 6.250 3 C -0.056 4.056 4 C -0.148 4.148 5 C -0.229 4.229 6 C 0.065 3.935 7 N -0.196 5.196 8 C -0.445 4.445 9 H 0.122 0.878 10 C -0.231 4.231 11 N -0.576 5.576 12 Si 0.820 3.180 13 H -0.192 1.192 14 H -0.209 1.209 15 H -0.191 1.191 16 C -0.210 4.210 17 C -0.141 4.141 18 C 0.068 3.932 19 O -0.261 6.261 20 C -0.060 4.060 21 H 0.072 0.928 22 H 0.134 0.866 23 H 0.074 0.926 24 H 0.165 0.835 25 H 0.138 0.862 26 H 0.228 0.772 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.061 0.939 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.546 -10.565 -1.873 12.078 hybrid contribution -0.049 1.255 -0.171 1.268 sum -5.595 -9.310 -2.045 11.053 Atomic orbital electron populations 1.23173 0.77870 1.04729 1.01428 1.85999 1.22132 1.26127 1.90723 1.18865 0.91074 0.85019 1.10669 1.20930 0.99959 0.90592 1.03301 1.20468 0.92489 0.97738 1.12197 1.17826 0.92424 0.85457 0.97755 1.40951 1.07920 1.01599 1.69115 1.19958 0.92828 0.84110 1.47567 0.87791 1.26102 0.97023 1.02245 0.97761 1.69803 1.09191 1.27010 1.51560 0.84912 0.77488 0.76417 0.79176 1.19227 1.20856 1.19142 1.19305 0.96484 0.90497 1.14726 1.20310 0.90545 1.01627 1.01619 1.17454 0.86581 0.85146 1.04042 1.85949 1.70929 1.38582 1.30623 1.23087 0.99798 0.98934 0.84141 0.92775 0.86585 0.92564 0.83524 0.86158 0.77186 0.91832 0.92156 0.90575 0.93298 0.86668 0.93891 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.63 16 2 O -0.33 -11.25 10.28 -79.89 -0.82 -12.07 16 3 C -0.01 -0.34 6.70 22.61 0.15 -0.19 16 4 C -0.13 -4.71 9.03 22.33 0.20 -4.51 16 5 C -0.20 -8.71 9.30 22.44 0.21 -8.50 16 6 C 0.18 8.44 6.60 38.34 0.25 8.69 16 7 N -0.59 -30.03 5.34 -184.29 -0.98 -31.01 16 8 C -0.31 -16.56 9.55 84.03 0.80 -15.76 16 9 H 0.10 5.17 5.67 -2.91 -0.02 5.16 16 10 C -0.03 -1.75 5.50 84.85 0.47 -1.28 16 11 N -0.94 -51.77 13.05 21.64 0.28 -51.49 16 12 Si 1.00 41.25 29.55 68.60 2.03 43.27 16 13 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 14 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 15 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 16 C -0.20 -8.65 5.91 -19.63 -0.12 -8.77 16 17 C -0.08 -3.20 9.34 71.23 0.67 -2.54 16 18 C 0.11 4.53 5.71 22.55 0.13 4.66 16 19 O -0.34 -12.61 9.42 -79.40 -0.75 -13.36 16 20 C 0.03 0.94 10.76 113.37 1.22 2.16 16 21 H 0.05 1.15 7.66 -2.39 -0.02 1.14 16 22 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.06 1.16 7.66 -2.38 -0.02 1.14 16 24 H 0.15 4.30 6.28 -2.91 -0.02 4.28 16 25 H 0.12 5.07 5.95 -2.91 -0.02 5.05 16 26 H 0.39 20.65 5.88 -92.71 -0.54 20.10 16 27 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.08 2.52 6.29 -2.39 -0.02 2.51 16 30 H 0.05 1.93 6.55 -2.39 -0.02 1.92 16 31 H 0.12 2.39 8.14 -2.39 -0.02 2.38 16 32 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.19 7.22 -2.38 -0.02 1.18 16 Total: -1.00 -61.57 277.20 5.44 -56.13 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.59 Total: 32.91 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 5.09 Total: -24.39 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -0.70 Total: -82.50 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -1.57 Total: -25.43 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Total: -61.57 5.44 -56.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187126.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.414 kcal (2) G-P(sol) polarization free energy of solvation -61.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds