Wall clock time and date at job start Sun Mar 29 2020 21:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20764 * 120.00125 * 2 1 4 4 C 1.50703 * 120.00102 * 179.97438 * 2 1 3 5 5 N 1.46504 * 109.47312 * 180.02562 * 4 2 1 6 6 C 1.39676 * 120.00066 * 180.02562 * 5 4 2 7 7 C 1.39287 * 119.93874 * 359.97438 * 6 5 4 8 8 C 1.38700 * 120.39865 * 180.02562 * 7 6 5 9 9 F 1.35102 * 119.86205 * 180.02562 * 8 7 6 10 10 C 1.37919 * 120.27768 * 0.02562 * 8 7 6 11 11 C 1.40712 * 119.86172 * 359.97438 * 10 8 7 12 12 C 1.41412 * 120.18997 * 179.97438 * 11 10 8 13 13 H 1.08007 * 119.99989 * 204.47999 * 12 11 10 14 14 C 1.39925 * 120.00105 * 24.48758 * 12 11 10 15 15 N 1.30831 * 120.00300 * 17.88019 * 14 12 11 16 16 Si 1.86800 * 120.00031 * 197.88808 * 14 12 11 17 17 H 1.48500 * 109.47169 * 89.99206 * 16 14 12 18 18 H 1.48499 * 109.47052 * 209.99808 * 16 14 12 19 19 H 1.48503 * 109.46943 * 329.99563 * 16 14 12 20 20 C 1.38294 * 119.93773 * 179.97438 * 6 5 4 21 21 H 1.09003 * 109.47496 * 269.99973 * 1 2 3 22 22 H 1.08995 * 109.47433 * 30.00650 * 1 2 3 23 23 H 1.09003 * 109.47479 * 150.00519 * 1 2 3 24 24 H 1.08997 * 109.47236 * 59.99754 * 4 2 1 25 25 H 1.09002 * 109.47329 * 300.00296 * 4 2 1 26 26 H 0.96997 * 119.99767 * 359.97438 * 5 4 2 27 27 H 1.08003 * 119.79900 * 0.28618 * 7 6 5 28 28 H 1.07995 * 120.07068 * 179.97438 * 10 8 7 29 29 H 0.97000 * 120.00428 * 180.02562 * 15 14 12 30 30 H 1.08003 * 120.13610 * 0.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 7 3.7009 -1.0374 0.0011 6 6 4.6085 -2.0991 0.0011 7 6 4.1428 -3.4118 0.0012 8 6 5.0356 -4.4732 0.0018 9 9 4.5720 -5.7422 0.0014 10 6 6.3947 -4.2387 0.0028 11 6 6.8776 -2.9170 0.0027 12 6 8.2697 -2.6686 0.0043 13 1 8.6513 -1.7354 0.3919 14 6 9.1529 -3.6315 -0.4964 15 7 8.7080 -4.5872 -1.2713 16 14 10.9670 -3.5528 -0.0582 17 1 11.2112 -4.3329 1.1816 18 1 11.7698 -4.1244 -1.1690 19 1 11.3623 -2.1382 0.1612 20 6 5.9679 -1.8449 0.0011 21 1 -0.3634 0.0000 1.0277 22 1 -0.3634 0.8899 -0.5139 23 1 -0.3634 -0.8900 -0.5138 24 1 1.9972 -1.8771 -0.8891 25 1 1.9971 -1.8764 0.8908 26 1 4.0242 -0.1229 0.0006 27 1 3.0801 -3.6043 -0.0034 28 1 7.0869 -5.0677 0.0037 29 1 9.3202 -5.2550 -1.6181 30 1 6.3292 -0.8271 0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167632238.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:35 Heat of formation + Delta-G solvation = -69.521385 kcal Electronic energy + Delta-G solvation = -15871.812143 eV Core-core repulsion = 12967.020201 eV Total energy + Delta-G solvation = -2904.791942 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.59291 -39.61174 -37.64860 -34.92673 -33.02526 -30.95705 -29.54917 -28.46906 -25.62843 -25.18295 -21.11345 -20.66347 -19.57946 -17.74060 -16.37540 -15.98436 -15.59889 -15.31403 -14.81953 -14.66171 -14.34756 -14.26781 -13.60834 -13.36758 -13.29635 -12.85981 -12.41812 -12.26012 -11.80068 -11.60512 -11.15166 -11.08907 -10.69390 -10.46739 -10.05896 -9.77552 -9.68941 -9.35380 -8.72186 -7.43832 -6.83415 -6.39180 -4.47274 1.83411 2.70640 2.99290 3.06831 3.09984 3.22019 3.73085 3.90514 4.29187 4.54892 4.87108 5.13982 5.25455 5.51322 5.53251 5.65928 5.71679 5.79477 6.32927 6.65739 6.79031 6.98521 7.14447 7.20306 7.35606 7.50818 7.75813 7.83846 8.05798 8.33929 8.49104 8.60107 8.84632 8.91213 10.12552 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.034082 B = 0.005777 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.350580 B = 4845.887808 C = 5574.545720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.349 3.651 3 O -0.457 6.457 4 C 0.081 3.919 5 N -0.755 5.755 6 C 0.250 3.750 7 C -0.342 4.342 8 C 0.135 3.865 9 F -0.168 7.168 10 C -0.232 4.232 11 C 0.160 3.840 12 C -0.456 4.456 13 H 0.082 0.918 14 C 0.077 3.923 15 N -0.783 5.783 16 Si 0.911 3.089 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.295 4.295 21 H 0.097 0.903 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.400 0.600 27 H 0.098 0.902 28 H 0.127 0.873 29 H 0.283 0.717 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 3.423 1.655 10.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.224 3.776 3 O -0.331 6.331 4 C -0.045 4.045 5 N -0.391 5.391 6 C 0.151 3.849 7 C -0.365 4.365 8 C 0.115 3.885 9 F -0.147 7.147 10 C -0.253 4.253 11 C 0.156 3.844 12 C -0.485 4.485 13 H 0.100 0.900 14 C -0.143 4.143 15 N -0.408 5.408 16 Si 0.735 3.265 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.319 4.319 21 H 0.115 0.885 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.237 0.763 27 H 0.116 0.884 28 H 0.144 0.856 29 H 0.094 0.906 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.604 3.638 1.497 10.378 hybrid contribution 0.687 -0.080 0.048 0.693 sum -8.917 3.557 1.545 9.724 Atomic orbital electron populations 1.22239 0.93812 1.04963 1.04800 1.24903 0.92302 0.90331 0.70035 1.90397 1.71935 1.34985 1.35758 1.21506 0.83862 0.95871 1.03266 1.44218 1.01948 1.07395 1.85543 1.17097 0.88602 0.86027 0.93215 1.19647 0.97145 0.90660 1.29081 1.17362 0.92790 0.76909 1.01457 1.91322 1.89925 1.39000 1.94438 1.21162 0.91533 0.98925 1.13703 1.17068 0.92720 0.89629 0.84956 1.19601 0.90747 1.02464 1.35688 0.89967 1.25974 1.01799 0.94036 0.92461 1.69847 1.37901 1.11519 1.21498 0.86268 0.81284 0.79838 0.79106 1.19140 1.20241 1.18495 1.20438 0.90099 0.98192 1.23200 0.88491 0.89618 0.89352 0.89455 0.89447 0.76328 0.88362 0.85559 0.90637 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.50 10.25 36.00 0.37 -1.13 16 2 C 0.35 4.21 7.33 -29.04 -0.21 3.99 16 3 O -0.46 -7.21 16.41 6.00 0.10 -7.11 16 4 C 0.08 1.11 5.31 -5.19 -0.03 1.08 16 5 N -0.75 -13.84 5.70 -59.87 -0.34 -14.18 16 6 C 0.25 5.59 6.64 -83.87 -0.56 5.03 16 7 C -0.34 -7.76 9.30 -39.02 -0.36 -8.13 16 8 C 0.13 3.36 7.28 -39.53 -0.29 3.07 16 9 F -0.17 -4.01 17.26 2.25 0.04 -3.97 16 10 C -0.23 -6.22 8.67 -38.76 -0.34 -6.56 16 11 C 0.16 4.28 5.57 -106.86 -0.60 3.69 16 12 C -0.46 -12.00 9.05 -37.74 -0.34 -12.35 16 13 H 0.08 2.07 7.91 -52.48 -0.41 1.65 16 14 C 0.08 1.91 5.14 -17.35 -0.09 1.82 16 15 N -0.78 -20.28 10.96 55.55 0.61 -19.67 16 16 Si 0.91 18.46 29.59 -169.99 -5.03 13.43 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 18 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 20 C -0.30 -7.27 9.63 -38.67 -0.37 -7.64 16 21 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 24 H 0.09 1.12 7.94 -51.93 -0.41 0.71 16 25 H 0.09 1.10 7.94 -51.93 -0.41 0.69 16 26 H 0.40 7.32 7.45 -40.82 -0.30 7.02 16 27 H 0.10 1.96 6.70 -52.48 -0.35 1.61 16 28 H 0.13 3.51 6.15 -52.49 -0.32 3.19 16 29 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 30 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 270.26 15.07 4.07 4.07 Total: -1.00 -29.54 270.26 -6.41 -35.95 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.04 Total: 8.59 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -2.81 Total: -17.11 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.27 Total: -33.85 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.10 Total: -7.11 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.04 Total: -3.97 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.54 -6.41 -35.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167632238.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.569 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds