Wall clock time and date at job start Sun Mar 29 2020 21:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20764 * 120.00125 * 2 1 4 4 C 1.50703 * 120.00102 * 179.97438 * 2 1 3 5 5 N 1.46504 * 109.47312 * 180.02562 * 4 2 1 6 6 C 1.39676 * 120.00066 * 180.02562 * 5 4 2 7 7 C 1.39287 * 119.93874 * 359.97438 * 6 5 4 8 8 C 1.38700 * 120.39865 * 180.02562 * 7 6 5 9 9 F 1.35102 * 119.86205 * 180.02562 * 8 7 6 10 10 C 1.37919 * 120.27768 * 0.02562 * 8 7 6 11 11 C 1.40712 * 119.86172 * 359.97438 * 10 8 7 12 12 C 1.41412 * 120.18997 * 179.97438 * 11 10 8 13 13 H 1.08007 * 119.99989 * 204.47999 * 12 11 10 14 14 C 1.39925 * 120.00105 * 24.48758 * 12 11 10 15 15 N 1.30831 * 120.00300 * 17.88019 * 14 12 11 16 16 Si 1.86800 * 120.00031 * 197.88808 * 14 12 11 17 17 H 1.48500 * 109.47169 * 89.99206 * 16 14 12 18 18 H 1.48499 * 109.47052 * 209.99808 * 16 14 12 19 19 H 1.48503 * 109.46943 * 329.99563 * 16 14 12 20 20 C 1.38294 * 119.93773 * 179.97438 * 6 5 4 21 21 H 1.09003 * 109.47496 * 269.99973 * 1 2 3 22 22 H 1.08995 * 109.47433 * 30.00650 * 1 2 3 23 23 H 1.09003 * 109.47479 * 150.00519 * 1 2 3 24 24 H 1.08997 * 109.47236 * 59.99754 * 4 2 1 25 25 H 1.09002 * 109.47329 * 300.00296 * 4 2 1 26 26 H 0.96997 * 119.99767 * 359.97438 * 5 4 2 27 27 H 1.08003 * 119.79900 * 0.28618 * 7 6 5 28 28 H 1.07995 * 120.07068 * 179.97438 * 10 8 7 29 29 H 0.97000 * 120.00428 * 180.02562 * 15 14 12 30 30 H 1.08003 * 120.13610 * 0.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 7 3.7009 -1.0374 0.0011 6 6 4.6085 -2.0991 0.0011 7 6 4.1428 -3.4118 0.0012 8 6 5.0356 -4.4732 0.0018 9 9 4.5720 -5.7422 0.0014 10 6 6.3947 -4.2387 0.0028 11 6 6.8776 -2.9170 0.0027 12 6 8.2697 -2.6686 0.0043 13 1 8.6513 -1.7354 0.3919 14 6 9.1529 -3.6315 -0.4964 15 7 8.7080 -4.5872 -1.2713 16 14 10.9670 -3.5528 -0.0582 17 1 11.2112 -4.3329 1.1816 18 1 11.7698 -4.1244 -1.1690 19 1 11.3623 -2.1382 0.1612 20 6 5.9679 -1.8449 0.0011 21 1 -0.3634 0.0000 1.0277 22 1 -0.3634 0.8899 -0.5139 23 1 -0.3634 -0.8900 -0.5138 24 1 1.9972 -1.8771 -0.8891 25 1 1.9971 -1.8764 0.8908 26 1 4.0242 -0.1229 0.0006 27 1 3.0801 -3.6043 -0.0034 28 1 7.0869 -5.0677 0.0037 29 1 9.3202 -5.2550 -1.6181 30 1 6.3292 -0.8271 0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167632238.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:35 Heat of formation + Delta-G solvation = -87.652407 kcal Electronic energy + Delta-G solvation = -15872.598363 eV Core-core repulsion = 12967.020201 eV Total energy + Delta-G solvation = -2905.578162 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.53289 -40.71751 -39.40231 -36.61016 -34.77110 -31.93539 -31.46594 -29.92497 -27.43536 -26.66368 -22.92390 -22.44820 -20.70257 -19.53164 -17.93475 -17.64406 -16.70849 -16.63643 -16.61584 -16.29848 -16.17811 -15.97061 -15.22563 -14.64455 -14.56461 -14.47252 -13.68085 -13.41083 -13.08273 -13.01470 -12.81435 -12.79774 -12.48126 -12.12533 -11.99790 -11.55739 -11.16475 -10.76450 -10.49259 -9.37493 -8.69980 -8.13427 -6.46146 0.83335 0.90832 1.11575 1.39600 1.53679 1.54305 2.19936 2.50503 2.66928 3.13918 3.63963 3.86840 4.14266 4.42804 4.44410 4.57694 4.67076 4.73626 4.75274 4.92512 5.05727 5.18099 5.24892 5.40372 5.65986 5.81261 5.92374 6.12913 6.42851 6.50186 6.70036 6.84667 6.89790 7.03925 8.28333 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.034082 B = 0.005777 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.350580 B = 4845.887808 C = 5574.545720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.357 3.643 3 O -0.502 6.502 4 C 0.067 3.933 5 N -0.752 5.752 6 C 0.262 3.738 7 C -0.336 4.336 8 C 0.129 3.871 9 F -0.164 7.164 10 C -0.264 4.264 11 C 0.136 3.864 12 C -0.491 4.491 13 H 0.083 0.917 14 C 0.036 3.964 15 N -0.817 5.817 16 Si 0.987 3.013 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.256 1.256 20 C -0.317 4.317 21 H 0.118 0.882 22 H 0.089 0.911 23 H 0.114 0.886 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.400 0.600 27 H 0.133 0.867 28 H 0.106 0.894 29 H 0.291 0.709 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.306 3.744 1.884 12.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.235 3.765 3 O -0.379 6.379 4 C -0.058 4.058 5 N -0.385 5.385 6 C 0.159 3.841 7 C -0.359 4.359 8 C 0.109 3.891 9 F -0.143 7.143 10 C -0.286 4.286 11 C 0.132 3.868 12 C -0.520 4.520 13 H 0.101 0.899 14 C -0.180 4.180 15 N -0.442 5.442 16 Si 0.807 3.193 17 H -0.186 1.186 18 H -0.191 1.191 19 H -0.179 1.179 20 C -0.341 4.341 21 H 0.136 0.864 22 H 0.108 0.892 23 H 0.132 0.868 24 H 0.123 0.877 25 H 0.125 0.875 26 H 0.236 0.764 27 H 0.151 0.849 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.159 3.968 1.724 11.969 hybrid contribution 0.981 -0.162 -0.036 0.995 sum -10.178 3.807 1.688 10.997 Atomic orbital electron populations 1.22244 0.89508 1.06478 1.06501 1.25340 0.94297 0.88671 0.68144 1.90404 1.73165 1.36093 1.38196 1.21956 0.81065 0.97808 1.04948 1.44347 1.03706 1.06335 1.84148 1.17113 0.88548 0.87115 0.91287 1.19911 0.98478 0.89890 1.27665 1.17535 0.92643 0.77717 1.01221 1.91321 1.89726 1.38822 1.94387 1.21063 0.92287 0.98531 1.16700 1.17384 0.93657 0.90226 0.85493 1.19883 0.91422 1.03447 1.37228 0.89930 1.26869 1.06461 0.93111 0.91586 1.69904 1.39869 1.12259 1.22161 0.85134 0.75106 0.80044 0.79017 1.18610 1.19101 1.17913 1.20567 0.91309 0.97821 1.24442 0.86421 0.89189 0.86763 0.87739 0.87469 0.76424 0.84940 0.87570 0.89865 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 10.25 71.23 0.73 -1.33 16 2 C 0.36 7.62 7.33 29.10 0.21 7.84 16 3 O -0.50 -15.15 16.41 -1.46 -0.02 -15.17 16 4 C 0.07 1.62 5.31 85.63 0.45 2.07 16 5 N -0.75 -26.34 5.70 -343.32 -1.96 -28.30 16 6 C 0.26 11.48 6.64 38.16 0.25 11.73 16 7 C -0.34 -14.72 9.30 22.63 0.21 -14.51 16 8 C 0.13 6.43 7.28 22.30 0.16 6.59 16 9 F -0.16 -7.75 17.26 44.97 0.78 -6.97 16 10 C -0.26 -14.64 8.67 22.80 0.20 -14.44 16 11 C 0.14 7.52 5.57 -21.31 -0.12 7.40 16 12 C -0.49 -26.73 9.05 23.46 0.21 -26.52 16 13 H 0.08 4.30 7.91 -2.91 -0.02 4.28 16 14 C 0.04 1.83 5.14 85.25 0.44 2.27 16 15 N -0.82 -43.47 10.96 21.82 0.24 -43.23 16 16 Si 0.99 38.17 29.59 68.60 2.03 40.20 16 17 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 18 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 19 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 20 C -0.32 -15.89 9.63 22.86 0.22 -15.67 16 21 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.11 0.69 8.12 -2.39 -0.02 0.67 16 24 H 0.11 2.26 7.94 -2.39 -0.02 2.24 16 25 H 0.11 2.26 7.94 -2.39 -0.02 2.24 16 26 H 0.40 14.30 7.45 -92.71 -0.69 13.61 16 27 H 0.13 4.82 6.70 -2.91 -0.02 4.80 16 28 H 0.11 6.20 6.15 -2.91 -0.02 6.18 16 29 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 30 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -65.88 270.26 4.52 -61.36 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.48 Total: 26.67 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 2.97 Total: -34.57 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -1.72 Total: -71.53 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.02 Total: -15.17 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 0.78 Total: -6.97 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -65.88 4.52 -61.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167632238.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.289 kcal (2) G-P(sol) polarization free energy of solvation -65.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds