Wall clock time and date at job start Sun Mar 29 2020 21:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.20758 * 119.99870 * 2 1 4 4 C 1.50693 * 119.99897 * 180.02562 * 2 1 3 5 5 N 1.46498 * 109.47189 * 179.97438 * 4 2 1 6 6 C 1.38804 * 120.00161 * 180.02562 * 5 4 2 7 7 C 1.38632 * 120.21599 * 0.23843 * 6 5 4 8 8 C 1.38225 * 120.21638 * 180.23540 * 7 6 5 9 9 C 1.38788 * 120.66314 * 359.78357 * 8 7 6 10 10 C 1.37735 * 120.43049 * 359.97339 * 9 8 7 11 11 F 1.35102 * 120.12343 * 179.97438 * 10 9 8 12 12 C 1.40992 * 119.76306 * 0.02562 * 10 9 8 13 13 C 1.40998 * 120.32169 * 179.97438 * 12 10 9 14 14 H 1.08000 * 120.00151 * 218.00214 * 13 12 10 15 15 C 1.39915 * 120.00380 * 37.99627 * 13 12 10 16 16 N 1.30909 * 119.99638 * 23.85247 * 15 13 12 17 17 Si 1.86797 * 120.00423 * 203.58339 * 15 13 12 18 18 H 1.48494 * 109.47320 * 180.27373 * 17 15 13 19 19 H 1.48500 * 109.46915 * 300.27734 * 17 15 13 20 20 H 1.48503 * 109.47047 * 60.26918 * 17 15 13 21 21 H 1.09000 * 109.47089 * 240.00089 * 1 2 3 22 22 H 1.09003 * 109.46742 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47061 * 119.99833 * 1 2 3 24 24 H 1.09006 * 109.47200 * 59.99804 * 4 2 1 25 25 H 1.09002 * 109.47064 * 300.00186 * 4 2 1 26 26 H 0.97003 * 120.00149 * 359.97438 * 5 4 2 27 27 H 1.08000 * 119.89336 * 359.97438 * 7 6 5 28 28 H 1.08002 * 119.66994 * 179.75715 * 8 7 6 29 29 H 1.08005 * 119.78704 * 180.02562 * 9 8 7 30 30 H 0.96996 * 119.99982 * 5.52098 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 7 3.7008 -1.0374 -0.0011 6 6 4.6028 -2.0924 -0.0022 7 6 4.1456 -3.4012 -0.0078 8 6 5.0438 -4.4518 -0.0041 9 6 6.4112 -4.2141 0.0009 10 6 6.8950 -2.9245 0.0016 11 9 8.2273 -2.7002 0.0069 12 6 5.9950 -1.8392 -0.0023 13 6 6.4774 -0.5144 -0.0011 14 1 5.9675 0.2455 0.5725 15 6 7.6168 -0.1840 -0.7429 16 7 7.9637 -0.9167 -1.7707 17 14 8.6385 1.3070 -0.2714 18 1 9.7798 1.4424 -1.2117 19 1 7.7943 2.5269 -0.3385 20 1 9.1535 1.1370 1.1111 21 1 -0.3633 -0.5138 0.8900 22 1 -0.3633 1.0277 0.0005 23 1 -0.3633 -0.5138 -0.8900 24 1 1.9971 -1.8763 -0.8908 25 1 1.9971 -1.8770 0.8891 26 1 4.0242 -0.1229 -0.0014 27 1 3.0842 -3.6005 -0.0110 28 1 4.6779 -5.4680 -0.0045 29 1 7.1004 -5.0456 0.0034 30 1 7.3891 -1.6398 -2.0669 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167632319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:30 Heat of formation + Delta-G solvation = -66.242727 kcal Electronic energy + Delta-G solvation = -16476.158552 eV Core-core repulsion = 13571.508784 eV Total energy + Delta-G solvation = -2904.649768 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.07989 -39.51923 -37.80551 -34.23789 -33.68355 -30.95300 -29.44889 -28.31253 -25.75744 -24.72038 -21.28285 -20.46223 -19.51471 -17.84997 -16.80522 -16.08290 -15.52236 -15.12109 -14.76992 -14.44777 -13.95316 -13.90112 -13.61968 -13.24260 -13.20084 -12.67535 -12.31533 -12.21667 -12.04817 -11.49968 -11.15842 -10.86820 -10.62285 -10.35105 -10.24935 -9.68005 -9.39886 -9.10381 -8.76608 -7.36675 -7.07304 -6.53018 -4.26131 1.95025 2.66377 2.77556 3.26524 3.33664 3.47132 3.85690 4.17866 4.45702 4.69237 4.94620 5.19367 5.30566 5.31668 5.54292 5.63713 5.81530 5.93717 6.00014 6.30089 6.36880 6.85203 7.18396 7.25137 7.41483 7.49447 7.70400 7.87804 8.00848 8.20855 8.28372 8.70684 8.81236 8.96809 10.26160 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.009473 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.984114 B = 2955.013882 C = 4161.976840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.345 3.655 3 O -0.449 6.449 4 C 0.082 3.918 5 N -0.739 5.739 6 C 0.145 3.855 7 C -0.189 4.189 8 C -0.172 4.172 9 C -0.165 4.165 10 C 0.014 3.986 11 F -0.147 7.147 12 C 0.028 3.972 13 C -0.535 4.535 14 H 0.074 0.926 15 C 0.042 3.958 16 N -0.794 5.794 17 Si 1.065 2.935 18 H -0.275 1.275 19 H -0.279 1.279 20 H -0.277 1.277 21 H 0.093 0.907 22 H 0.081 0.919 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.408 0.592 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.275 -0.865 2.243 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.219 3.781 3 O -0.322 6.322 4 C -0.044 4.044 5 N -0.376 5.376 6 C 0.045 3.955 7 C -0.212 4.212 8 C -0.191 4.191 9 C -0.186 4.186 10 C -0.007 4.007 11 F -0.126 7.126 12 C 0.022 3.978 13 C -0.564 4.564 14 H 0.092 0.908 15 C -0.179 4.179 16 N -0.416 5.416 17 Si 0.890 3.110 18 H -0.200 1.200 19 H -0.205 1.205 20 H -0.202 1.202 21 H 0.111 0.889 22 H 0.100 0.900 23 H 0.112 0.888 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.247 0.753 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.670 0.464 1.805 9.848 hybrid contribution -1.237 -0.811 0.345 1.519 sum -10.906 -0.347 2.150 11.122 Atomic orbital electron populations 1.22268 0.93894 1.04957 1.04630 1.24868 0.92203 0.90435 0.70553 1.90428 1.71913 1.34844 1.35021 1.21438 0.84304 0.95944 1.02713 1.43842 1.01052 1.08092 1.84633 1.17622 0.88864 0.86721 1.02320 1.20098 0.97617 0.91274 1.12245 1.19921 0.91928 0.96776 1.10524 1.20430 0.95703 0.94444 1.08032 1.17526 0.77163 0.92899 1.13159 1.91360 1.31093 1.95621 1.94481 1.17215 0.88959 0.93499 0.98143 1.19979 1.12725 0.94567 1.29142 0.90782 1.26776 0.95878 1.02706 0.92578 1.70431 1.37769 1.15164 1.18279 0.83621 0.76339 0.73971 0.77088 1.20001 1.20452 1.20215 0.88863 0.89975 0.88841 0.89973 0.89943 0.75331 0.88555 0.88327 0.88260 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 10.26 36.01 0.37 -1.29 16 2 C 0.34 4.65 7.33 -29.03 -0.21 4.43 16 3 O -0.45 -8.06 16.40 6.00 0.10 -7.96 16 4 C 0.08 1.21 5.32 -5.20 -0.03 1.18 16 5 N -0.74 -15.23 5.60 -59.40 -0.33 -15.57 16 6 C 0.15 3.40 6.68 -83.32 -0.56 2.85 16 7 C -0.19 -3.96 9.29 -39.44 -0.37 -4.33 16 8 C -0.17 -3.64 10.03 -39.38 -0.40 -4.03 16 9 C -0.17 -3.89 9.99 -39.56 -0.40 -4.28 16 10 C 0.01 0.38 6.15 -38.72 -0.24 0.14 16 11 F -0.15 -4.14 14.56 2.25 0.03 -4.10 16 12 C 0.03 0.74 5.00 -106.57 -0.53 0.20 16 13 C -0.54 -14.67 8.05 -37.91 -0.31 -14.98 16 14 H 0.07 1.99 7.22 -52.49 -0.38 1.61 16 15 C 0.04 1.13 4.36 -17.32 -0.08 1.06 16 16 N -0.79 -22.65 12.11 55.55 0.67 -21.98 16 17 Si 1.07 23.63 29.99 -169.99 -5.10 18.53 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 23 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.08 1.09 7.93 -51.93 -0.41 0.67 16 25 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 26 H 0.41 9.14 5.90 -40.82 -0.24 8.90 16 27 H 0.10 1.69 6.71 -52.49 -0.35 1.34 16 28 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 30 H 0.29 8.52 7.07 -40.82 -0.29 8.23 16 LS Contribution 265.74 15.07 4.00 4.00 Total: -1.00 -31.37 265.74 -6.35 -37.72 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -2.99 Total: 8.39 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -2.74 Total: -19.04 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.34 Total: -37.55 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.10 Total: -7.96 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.03 Total: -4.10 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.10 Total: 18.53 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.37 -6.35 -37.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167632319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.521 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds