Wall clock time and date at job start Sun Mar 29 2020 21:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.20758 * 119.99870 * 2 1 4 4 C 1.50693 * 119.99897 * 180.02562 * 2 1 3 5 5 N 1.46498 * 109.47189 * 179.97438 * 4 2 1 6 6 C 1.38804 * 120.00161 * 180.02562 * 5 4 2 7 7 C 1.38632 * 120.21599 * 0.23843 * 6 5 4 8 8 C 1.38225 * 120.21638 * 180.23540 * 7 6 5 9 9 C 1.38788 * 120.66314 * 359.78357 * 8 7 6 10 10 C 1.37735 * 120.43049 * 359.97339 * 9 8 7 11 11 F 1.35102 * 120.12343 * 179.97438 * 10 9 8 12 12 C 1.40992 * 119.76306 * 0.02562 * 10 9 8 13 13 C 1.40998 * 120.32169 * 179.97438 * 12 10 9 14 14 H 1.08000 * 120.00151 * 218.00214 * 13 12 10 15 15 C 1.39915 * 120.00380 * 37.99627 * 13 12 10 16 16 N 1.30909 * 119.99638 * 23.85247 * 15 13 12 17 17 Si 1.86797 * 120.00423 * 203.58339 * 15 13 12 18 18 H 1.48494 * 109.47320 * 180.27373 * 17 15 13 19 19 H 1.48500 * 109.46915 * 300.27734 * 17 15 13 20 20 H 1.48503 * 109.47047 * 60.26918 * 17 15 13 21 21 H 1.09000 * 109.47089 * 240.00089 * 1 2 3 22 22 H 1.09003 * 109.46742 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47061 * 119.99833 * 1 2 3 24 24 H 1.09006 * 109.47200 * 59.99804 * 4 2 1 25 25 H 1.09002 * 109.47064 * 300.00186 * 4 2 1 26 26 H 0.97003 * 120.00149 * 359.97438 * 5 4 2 27 27 H 1.08000 * 119.89336 * 359.97438 * 7 6 5 28 28 H 1.08002 * 119.66994 * 179.75715 * 8 7 6 29 29 H 1.08005 * 119.78704 * 180.02562 * 9 8 7 30 30 H 0.96996 * 119.99982 * 5.52098 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 7 3.7008 -1.0374 -0.0011 6 6 4.6028 -2.0924 -0.0022 7 6 4.1456 -3.4012 -0.0078 8 6 5.0438 -4.4518 -0.0041 9 6 6.4112 -4.2141 0.0009 10 6 6.8950 -2.9245 0.0016 11 9 8.2273 -2.7002 0.0069 12 6 5.9950 -1.8392 -0.0023 13 6 6.4774 -0.5144 -0.0011 14 1 5.9675 0.2455 0.5725 15 6 7.6168 -0.1840 -0.7429 16 7 7.9637 -0.9167 -1.7707 17 14 8.6385 1.3070 -0.2714 18 1 9.7798 1.4424 -1.2117 19 1 7.7943 2.5269 -0.3385 20 1 9.1535 1.1370 1.1111 21 1 -0.3633 -0.5138 0.8900 22 1 -0.3633 1.0277 0.0005 23 1 -0.3633 -0.5138 -0.8900 24 1 1.9971 -1.8763 -0.8908 25 1 1.9971 -1.8770 0.8891 26 1 4.0242 -0.1229 -0.0014 27 1 3.0842 -3.6005 -0.0110 28 1 4.6779 -5.4680 -0.0045 29 1 7.1004 -5.0456 0.0034 30 1 7.3891 -1.6398 -2.0669 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167632319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:30 Heat of formation + Delta-G solvation = -86.771886 kcal Electronic energy + Delta-G solvation = -16477.048763 eV Core-core repulsion = 13571.508784 eV Total energy + Delta-G solvation = -2905.539980 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.16173 -40.74622 -39.51638 -35.84633 -35.59102 -32.09059 -31.14213 -29.88536 -27.25257 -26.50770 -23.09470 -22.17596 -20.74484 -19.75650 -18.38962 -17.73365 -16.63882 -16.56921 -16.43855 -16.09089 -15.93090 -15.69215 -15.27079 -14.62607 -14.58723 -14.39228 -13.93655 -13.33949 -13.08422 -13.02894 -12.90458 -12.57988 -12.42237 -12.12376 -11.99094 -11.32023 -10.79886 -10.76043 -10.69217 -9.31753 -9.09775 -8.26560 -6.28514 0.79954 0.91170 0.95588 1.44546 1.56932 1.72689 2.35310 2.62100 2.77083 3.17264 3.40960 4.07423 4.13786 4.30694 4.45385 4.46330 4.55463 4.65649 4.68059 4.74320 5.03745 5.18835 5.39946 5.46698 5.54804 5.84274 5.87690 6.02493 6.31903 6.43579 6.53967 6.89402 6.96918 7.05952 8.19092 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.009473 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.984114 B = 2955.013882 C = 4161.976840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.348 3.652 3 O -0.506 6.506 4 C 0.069 3.931 5 N -0.748 5.748 6 C 0.148 3.852 7 C -0.190 4.190 8 C -0.141 4.141 9 C -0.189 4.189 10 C -0.013 4.013 11 F -0.166 7.166 12 C -0.016 4.016 13 C -0.567 4.567 14 H 0.063 0.937 15 C 0.002 3.998 16 N -0.827 5.827 17 Si 1.109 2.891 18 H -0.273 1.273 19 H -0.261 1.261 20 H -0.270 1.270 21 H 0.123 0.877 22 H 0.079 0.921 23 H 0.121 0.879 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.394 0.606 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.116 0.884 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.327 -2.337 2.786 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.227 3.773 3 O -0.383 6.383 4 C -0.055 4.055 5 N -0.381 5.381 6 C 0.046 3.954 7 C -0.213 4.213 8 C -0.161 4.161 9 C -0.209 4.209 10 C -0.034 4.034 11 F -0.145 7.145 12 C -0.022 4.022 13 C -0.597 4.597 14 H 0.081 0.919 15 C -0.212 4.212 16 N -0.451 5.451 17 Si 0.927 3.073 18 H -0.197 1.197 19 H -0.185 1.185 20 H -0.195 1.195 21 H 0.141 0.859 22 H 0.098 0.902 23 H 0.140 0.860 24 H 0.125 0.875 25 H 0.130 0.870 26 H 0.230 0.770 27 H 0.162 0.838 28 H 0.163 0.837 29 H 0.134 0.866 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.792 -1.031 2.357 13.048 hybrid contribution -0.543 -0.573 0.239 0.824 sum -13.335 -1.604 2.596 13.679 Atomic orbital electron populations 1.22268 0.89099 1.05813 1.07262 1.25516 0.94556 0.88941 0.68272 1.90435 1.73416 1.36398 1.38044 1.21947 0.80873 0.97659 1.05052 1.44122 1.03467 1.06867 1.83678 1.17937 0.88227 0.88697 1.00583 1.20600 1.00150 0.89784 1.10786 1.20551 0.90730 0.99148 1.05639 1.20741 0.97526 0.93550 1.09120 1.18091 0.76575 0.94581 1.14169 1.91294 1.32566 1.95889 1.94771 1.17591 0.90990 0.93459 1.00145 1.20017 1.14080 0.95124 1.30471 0.91875 1.28021 0.96902 1.04477 0.91790 1.70562 1.38234 1.16287 1.19999 0.83101 0.75373 0.71800 0.76982 1.19727 1.18510 1.19526 0.85870 0.90164 0.86049 0.87452 0.87003 0.76956 0.83824 0.83733 0.86589 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.32 10.26 71.24 0.73 -1.59 16 2 C 0.35 8.58 7.33 29.10 0.21 8.80 16 3 O -0.51 -18.13 16.40 -1.44 -0.02 -18.15 16 4 C 0.07 1.79 5.32 85.63 0.46 2.24 16 5 N -0.75 -30.18 5.60 -341.85 -1.92 -32.09 16 6 C 0.15 6.79 6.68 38.94 0.26 7.05 16 7 C -0.19 -7.21 9.29 22.36 0.21 -7.00 16 8 C -0.14 -5.42 10.03 22.40 0.22 -5.19 16 9 C -0.19 -8.63 9.99 22.28 0.22 -8.41 16 10 C -0.01 -0.69 6.15 22.83 0.14 -0.55 16 11 F -0.17 -9.81 14.56 44.97 0.65 -9.15 16 12 C -0.02 -0.90 5.00 -21.12 -0.11 -1.00 16 13 C -0.57 -32.60 8.05 23.35 0.19 -32.41 16 14 H 0.06 3.60 7.22 -2.91 -0.02 3.58 16 15 C 0.00 0.11 4.36 85.24 0.37 0.49 16 16 N -0.83 -49.66 12.11 21.83 0.26 -49.40 16 17 Si 1.11 49.55 29.99 68.60 2.06 51.61 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 23 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.11 2.31 7.93 -2.38 -0.02 2.30 16 25 H 0.11 2.31 7.95 -2.39 -0.02 2.29 16 26 H 0.39 18.15 5.90 -92.71 -0.55 17.60 16 27 H 0.14 4.09 6.71 -2.91 -0.02 4.07 16 28 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 29 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 30 H 0.27 16.85 7.07 -92.71 -0.66 16.19 16 Total: -1.00 -73.71 265.74 4.68 -69.03 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.73 Total: 25.73 kcal Atomic # 6 Polarization: -40.49 SS G_CDS: 2.91 Total: -37.58 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -1.65 Total: -81.49 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.02 Total: -18.15 kcal Atomic # 9 Polarization: -9.81 SS G_CDS: 0.65 Total: -9.15 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.06 Total: 51.61 kcal Total: -73.71 4.68 -69.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167632319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.738 kcal (2) G-P(sol) polarization free energy of solvation -73.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds