Wall clock time and date at job start Sun Mar 29 2020 21:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46200 * 2 1 4 4 C 1.53039 * 109.44927 * 240.03025 * 2 1 3 5 5 C 1.53621 * 109.24224 * 178.49735 * 4 2 1 6 6 N 1.46930 * 108.54583 * 54.85601 * 5 4 2 7 7 C 1.36934 * 120.62854 * 126.36804 * 6 5 4 8 8 H 1.08001 * 119.99635 * 210.40707 * 7 6 5 9 9 C 1.38809 * 120.00238 * 30.40692 * 7 6 5 10 10 N 1.31617 * 119.99873 * 23.82088 * 9 7 6 11 11 Si 1.86800 * 119.99959 * 203.81662 * 9 7 6 12 12 H 1.48501 * 109.46712 * 90.00503 * 11 9 7 13 13 H 1.48493 * 109.47325 * 330.00034 * 11 9 7 14 14 H 1.48505 * 109.46715 * 209.99874 * 11 9 7 15 15 C 1.46922 * 118.73564 * 306.09995 * 6 5 4 16 16 H 1.09007 * 109.58588 * 294.06258 * 15 6 5 17 17 C 1.53000 * 109.58725 * 173.78921 * 15 6 5 18 18 F 1.39905 * 109.47200 * 59.99204 * 17 15 6 19 19 F 1.39894 * 109.47409 * 179.97438 * 17 15 6 20 20 F 1.39901 * 109.46948 * 299.99710 * 17 15 6 21 21 C 1.53039 * 109.46081 * 119.97147 * 2 1 3 22 22 H 1.08997 * 109.46839 * 300.02560 * 1 2 3 23 23 H 1.09000 * 109.46928 * 60.03196 * 1 2 3 24 24 H 1.09002 * 109.46744 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.49847 * 298.57404 * 4 2 1 26 26 H 1.09000 * 109.49466 * 58.63963 * 4 2 1 27 27 H 1.09000 * 109.73987 * 295.11722 * 5 4 2 28 28 H 1.08997 * 109.66681 * 174.55395 * 5 4 2 29 29 H 0.97003 * 120.00458 * 3.79815 * 10 9 7 30 30 H 1.08998 * 109.49888 * 61.42119 * 21 2 1 31 31 H 1.09007 * 109.49759 * 301.32605 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 3.5753 -0.6852 -1.2644 6 7 4.0677 -1.2493 -0.0002 7 6 4.9761 -2.2740 -0.0004 8 1 4.9773 -2.9946 0.8041 9 6 5.8952 -2.3866 -1.0344 10 7 6.2272 -1.3251 -1.7382 11 14 6.6610 -4.0446 -1.4270 12 1 5.8225 -4.7525 -2.4275 13 1 6.7445 -4.8573 -0.1870 14 1 8.0247 -3.8417 -1.9787 15 6 3.5714 -0.6890 1.2640 16 1 3.9146 0.3405 1.3671 17 6 4.0941 -1.5234 2.4351 18 9 5.4930 -1.5029 2.4347 19 9 3.6206 -0.9875 3.6375 20 9 3.6470 -2.8425 2.3039 21 6 2.0399 -0.7209 1.2500 22 1 -0.3633 0.5142 0.8897 23 1 -0.3633 0.5133 -0.8903 24 1 -0.3633 -1.0277 0.0005 25 1 1.6973 -1.7557 -1.2383 26 1 1.6565 -0.2211 -2.1398 27 1 3.9188 0.3445 -1.3634 28 1 3.9482 -1.2787 -2.0992 29 1 5.8722 -0.4544 -1.4998 30 1 1.6977 -1.7556 1.2383 31 1 1.6574 -0.2208 2.1398 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177021783.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:20 Heat of formation + Delta-G solvation = -148.306669 kcal Electronic energy + Delta-G solvation = -18589.259644 eV Core-core repulsion = 15262.654880 eV Total energy + Delta-G solvation = -3326.604763 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.31263 -46.88082 -46.59780 -38.15947 -34.18394 -31.83993 -30.25402 -27.44830 -25.30919 -23.96949 -21.93674 -20.88697 -19.36456 -17.91440 -17.65972 -17.42312 -15.97018 -14.63907 -14.31481 -13.92421 -13.82093 -13.61540 -13.50305 -13.39413 -13.15457 -12.98193 -12.86130 -12.82491 -12.46922 -11.72772 -11.51982 -11.37488 -10.87309 -10.73970 -10.59554 -10.29183 -10.07403 -10.00138 -9.77614 -9.25963 -8.42438 -7.01746 -6.12591 -3.35405 3.50496 3.52693 3.56232 3.69406 4.42767 4.58372 4.78000 4.89574 5.19365 5.26937 5.32616 5.44632 5.46855 5.76441 5.78599 5.94346 6.02082 6.05105 6.18994 6.23766 6.42098 6.50995 6.57550 6.65255 6.97692 7.09561 7.92622 8.51372 8.94357 9.72696 10.10027 11.15988 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.012870 C = 0.009320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.312193 B = 2175.140237 C = 3003.418661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 H 0.064 0.936 4 C -0.134 4.134 5 C 0.157 3.843 6 N -0.587 5.587 7 C -0.368 4.368 8 H 0.070 0.930 9 C -0.013 4.013 10 N -0.912 5.912 11 Si 1.070 2.930 12 H -0.291 1.291 13 H -0.290 1.290 14 H -0.289 1.289 15 C 0.134 3.866 16 H 0.060 0.940 17 C 0.460 3.540 18 F -0.170 7.170 19 F -0.202 7.202 20 F -0.179 7.179 21 C -0.128 4.128 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.021 0.979 28 H 0.083 0.917 29 H 0.269 0.731 30 H 0.072 0.928 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.566 2.100 4.522 9.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.082 0.918 4 C -0.173 4.173 5 C 0.032 3.968 6 N -0.313 5.313 7 C -0.497 4.497 8 H 0.088 0.912 9 C -0.216 4.216 10 N -0.551 5.551 11 Si 0.899 3.101 12 H -0.219 1.219 13 H -0.216 1.216 14 H -0.215 1.215 15 C 0.025 3.975 16 H 0.078 0.922 17 C 0.405 3.595 18 F -0.151 7.151 19 F -0.184 7.184 20 F -0.160 7.160 21 C -0.168 4.168 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.480 1.260 3.515 8.360 hybrid contribution -0.922 0.724 1.345 1.784 sum -8.402 1.984 4.860 9.907 Atomic orbital electron populations 1.21831 0.95775 1.01510 1.00971 1.20948 0.94671 0.99135 0.95230 0.91751 1.22230 0.99036 1.00132 0.95876 1.21082 0.89902 0.96638 0.89185 1.44017 1.49329 1.40264 0.97659 1.20284 1.11899 1.03494 1.13994 0.91246 1.25908 0.94522 1.04205 0.96988 1.70769 1.41270 0.99269 1.43775 0.83440 0.76238 0.74595 0.75798 1.21875 1.21650 1.21499 1.21546 0.94309 0.95052 0.86562 0.92232 1.20527 0.76362 0.79450 0.83144 1.93198 1.29099 1.96342 1.96435 1.93086 1.88677 1.86352 1.50274 1.93099 1.89121 1.38114 1.95707 1.22086 0.94948 1.01804 0.97931 0.93195 0.92958 0.92862 0.92033 0.92786 0.96065 0.89862 0.91959 0.90969 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.19 37.16 0.34 -1.50 16 2 C -0.08 -1.28 2.68 -90.58 -0.24 -1.52 16 3 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -2.38 5.38 -26.39 -0.14 -2.52 16 5 C 0.16 3.49 4.71 -3.49 -0.02 3.47 16 6 N -0.59 -14.17 2.81 -164.52 -0.46 -14.64 16 7 C -0.37 -10.01 7.49 -15.06 -0.11 -10.13 16 8 H 0.07 1.95 5.12 -52.49 -0.27 1.68 16 9 C -0.01 -0.36 4.70 -17.43 -0.08 -0.44 16 10 N -0.91 -26.73 12.55 55.49 0.70 -26.03 16 11 Si 1.07 25.47 29.98 -169.99 -5.10 20.38 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.13 2.77 2.88 -67.60 -0.19 2.58 16 16 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 17 C 0.46 9.72 2.36 37.16 0.09 9.80 16 18 F -0.17 -4.00 15.37 2.25 0.03 -3.96 16 19 F -0.20 -3.77 16.95 2.25 0.04 -3.74 16 20 F -0.18 -3.94 14.57 2.25 0.03 -3.91 16 21 C -0.13 -2.21 4.41 -26.61 -0.12 -2.33 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.02 0.48 7.82 -51.93 -0.41 0.07 16 28 H 0.08 2.08 6.47 -51.93 -0.34 1.75 16 29 H 0.27 7.90 6.62 -40.82 -0.27 7.63 16 30 H 0.07 1.31 7.66 -51.93 -0.40 0.92 16 31 H 0.06 0.94 7.99 -51.93 -0.41 0.53 16 LS Contribution 256.01 15.07 3.86 3.86 Total: -1.00 -28.85 256.01 -5.23 -34.07 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -3.85 Total: -3.44 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.48 Total: -2.59 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.23 Total: -40.67 kcal Atomic # 9 Polarization: -11.71 SS G_CDS: 0.11 Total: -11.61 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.10 Total: 20.38 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.85 -5.23 -34.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177021783.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.235 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds