Wall clock time and date at job start Sun Mar 29 2020 21:46:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09001 * 109.46200 * 2 1
4 4 C 1.53039 * 109.44927 * 240.03025 * 2 1 3
5 5 C 1.53621 * 109.24224 * 178.49735 * 4 2 1
6 6 N 1.46930 * 108.54583 * 54.85601 * 5 4 2
7 7 C 1.36934 * 120.62854 * 126.36804 * 6 5 4
8 8 H 1.08001 * 119.99635 * 210.40707 * 7 6 5
9 9 C 1.38809 * 120.00238 * 30.40692 * 7 6 5
10 10 N 1.31617 * 119.99873 * 23.82088 * 9 7 6
11 11 Si 1.86800 * 119.99959 * 203.81662 * 9 7 6
12 12 H 1.48501 * 109.46712 * 90.00503 * 11 9 7
13 13 H 1.48493 * 109.47325 * 330.00034 * 11 9 7
14 14 H 1.48505 * 109.46715 * 209.99874 * 11 9 7
15 15 C 1.46922 * 118.73564 * 306.09995 * 6 5 4
16 16 H 1.09007 * 109.58588 * 294.06258 * 15 6 5
17 17 C 1.53000 * 109.58725 * 173.78921 * 15 6 5
18 18 F 1.39905 * 109.47200 * 59.99204 * 17 15 6
19 19 F 1.39894 * 109.47409 * 179.97438 * 17 15 6
20 20 F 1.39901 * 109.46948 * 299.99710 * 17 15 6
21 21 C 1.53039 * 109.46081 * 119.97147 * 2 1 3
22 22 H 1.08997 * 109.46839 * 300.02560 * 1 2 3
23 23 H 1.09000 * 109.46928 * 60.03196 * 1 2 3
24 24 H 1.09002 * 109.46744 * 180.02562 * 1 2 3
25 25 H 1.09002 * 109.49847 * 298.57404 * 4 2 1
26 26 H 1.09000 * 109.49466 * 58.63963 * 4 2 1
27 27 H 1.09000 * 109.73987 * 295.11722 * 5 4 2
28 28 H 1.08997 * 109.66681 * 174.55395 * 5 4 2
29 29 H 0.97003 * 120.00458 * 3.79815 * 10 9 7
30 30 H 1.08998 * 109.49888 * 61.42119 * 21 2 1
31 31 H 1.09007 * 109.49759 * 301.32605 * 21 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0396 -0.7209 -1.2501
5 6 3.5753 -0.6852 -1.2644
6 7 4.0677 -1.2493 -0.0002
7 6 4.9761 -2.2740 -0.0004
8 1 4.9773 -2.9946 0.8041
9 6 5.8952 -2.3866 -1.0344
10 7 6.2272 -1.3251 -1.7382
11 14 6.6610 -4.0446 -1.4270
12 1 5.8225 -4.7525 -2.4275
13 1 6.7445 -4.8573 -0.1870
14 1 8.0247 -3.8417 -1.9787
15 6 3.5714 -0.6890 1.2640
16 1 3.9146 0.3405 1.3671
17 6 4.0941 -1.5234 2.4351
18 9 5.4930 -1.5029 2.4347
19 9 3.6206 -0.9875 3.6375
20 9 3.6470 -2.8425 2.3039
21 6 2.0399 -0.7209 1.2500
22 1 -0.3633 0.5142 0.8897
23 1 -0.3633 0.5133 -0.8903
24 1 -0.3633 -1.0277 0.0005
25 1 1.6973 -1.7557 -1.2383
26 1 1.6565 -0.2211 -2.1398
27 1 3.9188 0.3445 -1.3634
28 1 3.9482 -1.2787 -2.0992
29 1 5.8722 -0.4544 -1.4998
30 1 1.6977 -1.7556 1.2383
31 1 1.6574 -0.2208 2.1398
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001177021783.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:46:20
Heat of formation + Delta-G solvation = -164.539288 kcal
Electronic energy + Delta-G solvation = -18589.963543 eV
Core-core repulsion = 15262.654880 eV
Total energy + Delta-G solvation = -3327.308662 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 237.104 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-51.02449 -48.54131 -48.39167 -39.74649 -35.89292 -33.55344 -31.99187 -29.03577
-26.85639 -25.79748 -23.59220 -22.48886 -20.91564 -19.78271 -19.39372 -19.12468
-17.74169 -16.31566 -15.97137 -15.59651 -15.51607 -15.31118 -15.15844 -15.00188
-14.83537 -14.62868 -14.57145 -14.55411 -13.95673 -13.26754 -12.94571 -12.81984
-12.56510 -12.45402 -12.18613 -11.92871 -11.79014 -11.55623 -11.28507 -11.08052
-10.48584 -9.00324 -8.25949 -5.47084 1.56755 1.63458 1.80858 1.87212
2.56296 2.89641 3.02226 3.19286 3.28749 3.72955 3.87989 3.94829
4.07272 4.24424 4.33401 4.59423 4.70890 4.82300 4.86653 4.97147
5.01075 5.14555 5.22269 5.26406 5.42664 5.55426 5.84517 6.39656
6.92858 7.66811 8.07153 8.99563
Molecular weight = 237.10amu
Principal moments of inertia in cm(-1)
A = 0.022353 B = 0.012870 C = 0.009320
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1252.312193 B = 2175.140237 C = 3003.418661
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.078 4.078
3 H 0.070 0.930
4 C -0.123 4.123
5 C 0.160 3.840
6 N -0.605 5.605
7 C -0.362 4.362
8 H 0.060 0.940
9 C -0.064 4.064
10 N -0.939 5.939
11 Si 1.110 2.890
12 H -0.280 1.280
13 H -0.279 1.279
14 H -0.292 1.292
15 C 0.128 3.872
16 H 0.065 0.935
17 C 0.459 3.541
18 F -0.188 7.188
19 F -0.184 7.184
20 F -0.185 7.185
21 C -0.120 4.120
22 H 0.067 0.933
23 H 0.066 0.934
24 H 0.052 0.948
25 H 0.051 0.949
26 H 0.077 0.923
27 H 0.014 0.986
28 H 0.047 0.953
29 H 0.257 0.743
30 H 0.062 0.938
31 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.396 2.356 5.114 11.823
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.097 4.097
3 H 0.089 0.911
4 C -0.162 4.162
5 C 0.035 3.965
6 N -0.331 5.331
7 C -0.491 4.491
8 H 0.077 0.923
9 C -0.261 4.261
10 N -0.580 5.580
11 Si 0.935 3.065
12 H -0.206 1.206
13 H -0.205 1.205
14 H -0.219 1.219
15 C 0.020 3.980
16 H 0.083 0.917
17 C 0.404 3.596
18 F -0.170 7.170
19 F -0.166 7.166
20 F -0.167 7.167
21 C -0.159 4.159
22 H 0.086 0.914
23 H 0.085 0.915
24 H 0.071 0.929
25 H 0.070 0.930
26 H 0.095 0.905
27 H 0.032 0.968
28 H 0.066 0.934
29 H 0.067 0.933
30 H 0.081 0.919
31 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -9.345 1.523 4.127 10.329
hybrid contribution -0.375 0.685 1.241 1.466
sum -9.720 2.208 5.369 11.321
Atomic orbital electron populations
1.21755 0.92813 1.02060 1.02670 1.20956 0.97000 0.98686 0.93017
0.91134 1.22100 0.95316 1.00356 0.98387 1.20993 0.92949 0.95161
0.87395 1.44183 1.49225 1.40280 0.99449 1.20375 1.11694 1.03861
1.13213 0.92285 1.27038 0.95426 1.06172 0.97504 1.70869 1.42924
0.99213 1.44958 0.82901 0.75487 0.71851 0.76248 1.20614 1.20500
1.21892 1.21802 0.96717 0.94732 0.84727 0.91718 1.20636 0.75533
0.79358 0.84050 1.93160 1.30796 1.96416 1.96592 1.93114 1.88293
1.85990 1.49204 1.93082 1.89057 1.38697 1.95817 1.22059 0.91788
1.01959 1.00105 0.91354 0.91505 0.92896 0.92972 0.90458 0.96809
0.93405 0.93274 0.91889 0.89124
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.90 9.19 71.98 0.66 -2.24 16
2 C -0.08 -2.22 2.68 -10.77 -0.03 -2.25 16
3 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
4 C -0.12 -4.16 5.38 30.82 0.17 -4.00 16
5 C 0.16 7.13 4.71 86.51 0.41 7.54 16
6 N -0.61 -29.22 2.81 -674.41 -1.90 -31.12 16
7 C -0.36 -19.87 7.49 84.03 0.63 -19.24 16
8 H 0.06 3.33 5.12 -2.91 -0.01 3.32 16
9 C -0.06 -3.60 4.70 84.86 0.40 -3.20 16
10 N -0.94 -56.31 12.55 21.65 0.27 -56.04 16
11 Si 1.11 51.86 29.98 68.60 2.06 53.91 16
12 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16
13 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16
14 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16
15 C 0.13 5.14 2.88 44.97 0.13 5.27 16
16 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16
17 C 0.46 18.93 2.36 71.98 0.17 19.10 16
18 F -0.19 -8.87 15.37 44.97 0.69 -8.18 16
19 F -0.18 -6.51 16.95 44.97 0.76 -5.75 16
20 F -0.18 -8.00 14.57 44.97 0.66 -7.35 16
21 C -0.12 -3.81 4.41 30.67 0.14 -3.68 16
22 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16
25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16
26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
27 H 0.01 0.63 7.82 -2.39 -0.02 0.61 16
28 H 0.05 2.45 6.47 -2.39 -0.02 2.44 16
29 H 0.26 15.57 6.62 -92.71 -0.61 14.95 16
30 H 0.06 2.14 7.66 -2.39 -0.02 2.12 16
31 H 0.09 2.39 7.99 -2.38 -0.02 2.37 16
Total: -1.00 -62.21 256.01 6.49 -55.71
By element:
Atomic # 1 Polarization: 0.23 SS G_CDS: 1.28 Total: 1.51 kcal
Atomic # 6 Polarization: -5.37 SS G_CDS: 2.67 Total: -2.70 kcal
Atomic # 7 Polarization: -85.53 SS G_CDS: -1.62 Total: -87.16 kcal
Atomic # 9 Polarization: -23.39 SS G_CDS: 2.11 Total: -21.28 kcal
Atomic # 14 Polarization: 51.86 SS G_CDS: 2.06 Total: 53.91 kcal
Total: -62.21 6.49 -55.71 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001177021783.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -108.828 kcal
(2) G-P(sol) polarization free energy of solvation -62.206 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.033 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.494 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -164.539 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds