Wall clock time and date at job start Sun Mar 29 2020 21:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46200 * 2 1 4 4 C 1.53039 * 109.44927 * 240.03025 * 2 1 3 5 5 C 1.53621 * 109.24224 * 178.49735 * 4 2 1 6 6 N 1.46930 * 108.54583 * 54.85601 * 5 4 2 7 7 C 1.36934 * 120.62854 * 126.36804 * 6 5 4 8 8 H 1.08001 * 119.99635 * 210.40707 * 7 6 5 9 9 C 1.38809 * 120.00238 * 30.40692 * 7 6 5 10 10 N 1.31617 * 119.99873 * 23.82088 * 9 7 6 11 11 Si 1.86800 * 119.99959 * 203.81662 * 9 7 6 12 12 H 1.48501 * 109.46712 * 90.00503 * 11 9 7 13 13 H 1.48493 * 109.47325 * 330.00034 * 11 9 7 14 14 H 1.48505 * 109.46715 * 209.99874 * 11 9 7 15 15 C 1.46922 * 118.73564 * 306.09995 * 6 5 4 16 16 H 1.09007 * 109.58588 * 294.06258 * 15 6 5 17 17 C 1.53000 * 109.58725 * 173.78921 * 15 6 5 18 18 F 1.39905 * 109.47200 * 59.99204 * 17 15 6 19 19 F 1.39894 * 109.47409 * 179.97438 * 17 15 6 20 20 F 1.39901 * 109.46948 * 299.99710 * 17 15 6 21 21 C 1.53039 * 109.46081 * 119.97147 * 2 1 3 22 22 H 1.08997 * 109.46839 * 300.02560 * 1 2 3 23 23 H 1.09000 * 109.46928 * 60.03196 * 1 2 3 24 24 H 1.09002 * 109.46744 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.49847 * 298.57404 * 4 2 1 26 26 H 1.09000 * 109.49466 * 58.63963 * 4 2 1 27 27 H 1.09000 * 109.73987 * 295.11722 * 5 4 2 28 28 H 1.08997 * 109.66681 * 174.55395 * 5 4 2 29 29 H 0.97003 * 120.00458 * 3.79815 * 10 9 7 30 30 H 1.08998 * 109.49888 * 61.42119 * 21 2 1 31 31 H 1.09007 * 109.49759 * 301.32605 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 3.5753 -0.6852 -1.2644 6 7 4.0677 -1.2493 -0.0002 7 6 4.9761 -2.2740 -0.0004 8 1 4.9773 -2.9946 0.8041 9 6 5.8952 -2.3866 -1.0344 10 7 6.2272 -1.3251 -1.7382 11 14 6.6610 -4.0446 -1.4270 12 1 5.8225 -4.7525 -2.4275 13 1 6.7445 -4.8573 -0.1870 14 1 8.0247 -3.8417 -1.9787 15 6 3.5714 -0.6890 1.2640 16 1 3.9146 0.3405 1.3671 17 6 4.0941 -1.5234 2.4351 18 9 5.4930 -1.5029 2.4347 19 9 3.6206 -0.9875 3.6375 20 9 3.6470 -2.8425 2.3039 21 6 2.0399 -0.7209 1.2500 22 1 -0.3633 0.5142 0.8897 23 1 -0.3633 0.5133 -0.8903 24 1 -0.3633 -1.0277 0.0005 25 1 1.6973 -1.7557 -1.2383 26 1 1.6565 -0.2211 -2.1398 27 1 3.9188 0.3445 -1.3634 28 1 3.9482 -1.2787 -2.0992 29 1 5.8722 -0.4544 -1.4998 30 1 1.6977 -1.7556 1.2383 31 1 1.6574 -0.2208 2.1398 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177021783.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:20 Heat of formation + Delta-G solvation = -164.539288 kcal Electronic energy + Delta-G solvation = -18589.963543 eV Core-core repulsion = 15262.654880 eV Total energy + Delta-G solvation = -3327.308662 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -51.02449 -48.54131 -48.39167 -39.74649 -35.89292 -33.55344 -31.99187 -29.03577 -26.85639 -25.79748 -23.59220 -22.48886 -20.91564 -19.78271 -19.39372 -19.12468 -17.74169 -16.31566 -15.97137 -15.59651 -15.51607 -15.31118 -15.15844 -15.00188 -14.83537 -14.62868 -14.57145 -14.55411 -13.95673 -13.26754 -12.94571 -12.81984 -12.56510 -12.45402 -12.18613 -11.92871 -11.79014 -11.55623 -11.28507 -11.08052 -10.48584 -9.00324 -8.25949 -5.47084 1.56755 1.63458 1.80858 1.87212 2.56296 2.89641 3.02226 3.19286 3.28749 3.72955 3.87989 3.94829 4.07272 4.24424 4.33401 4.59423 4.70890 4.82300 4.86653 4.97147 5.01075 5.14555 5.22269 5.26406 5.42664 5.55426 5.84517 6.39656 6.92858 7.66811 8.07153 8.99563 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.012870 C = 0.009320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.312193 B = 2175.140237 C = 3003.418661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 H 0.070 0.930 4 C -0.123 4.123 5 C 0.160 3.840 6 N -0.605 5.605 7 C -0.362 4.362 8 H 0.060 0.940 9 C -0.064 4.064 10 N -0.939 5.939 11 Si 1.110 2.890 12 H -0.280 1.280 13 H -0.279 1.279 14 H -0.292 1.292 15 C 0.128 3.872 16 H 0.065 0.935 17 C 0.459 3.541 18 F -0.188 7.188 19 F -0.184 7.184 20 F -0.185 7.185 21 C -0.120 4.120 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.014 0.986 28 H 0.047 0.953 29 H 0.257 0.743 30 H 0.062 0.938 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 2.356 5.114 11.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 H 0.089 0.911 4 C -0.162 4.162 5 C 0.035 3.965 6 N -0.331 5.331 7 C -0.491 4.491 8 H 0.077 0.923 9 C -0.261 4.261 10 N -0.580 5.580 11 Si 0.935 3.065 12 H -0.206 1.206 13 H -0.205 1.205 14 H -0.219 1.219 15 C 0.020 3.980 16 H 0.083 0.917 17 C 0.404 3.596 18 F -0.170 7.170 19 F -0.166 7.166 20 F -0.167 7.167 21 C -0.159 4.159 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.345 1.523 4.127 10.329 hybrid contribution -0.375 0.685 1.241 1.466 sum -9.720 2.208 5.369 11.321 Atomic orbital electron populations 1.21755 0.92813 1.02060 1.02670 1.20956 0.97000 0.98686 0.93017 0.91134 1.22100 0.95316 1.00356 0.98387 1.20993 0.92949 0.95161 0.87395 1.44183 1.49225 1.40280 0.99449 1.20375 1.11694 1.03861 1.13213 0.92285 1.27038 0.95426 1.06172 0.97504 1.70869 1.42924 0.99213 1.44958 0.82901 0.75487 0.71851 0.76248 1.20614 1.20500 1.21892 1.21802 0.96717 0.94732 0.84727 0.91718 1.20636 0.75533 0.79358 0.84050 1.93160 1.30796 1.96416 1.96592 1.93114 1.88293 1.85990 1.49204 1.93082 1.89057 1.38697 1.95817 1.22059 0.91788 1.01959 1.00105 0.91354 0.91505 0.92896 0.92972 0.90458 0.96809 0.93405 0.93274 0.91889 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.19 71.98 0.66 -2.24 16 2 C -0.08 -2.22 2.68 -10.77 -0.03 -2.25 16 3 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.12 -4.16 5.38 30.82 0.17 -4.00 16 5 C 0.16 7.13 4.71 86.51 0.41 7.54 16 6 N -0.61 -29.22 2.81 -674.41 -1.90 -31.12 16 7 C -0.36 -19.87 7.49 84.03 0.63 -19.24 16 8 H 0.06 3.33 5.12 -2.91 -0.01 3.32 16 9 C -0.06 -3.60 4.70 84.86 0.40 -3.20 16 10 N -0.94 -56.31 12.55 21.65 0.27 -56.04 16 11 Si 1.11 51.86 29.98 68.60 2.06 53.91 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 14 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 15 C 0.13 5.14 2.88 44.97 0.13 5.27 16 16 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 17 C 0.46 18.93 2.36 71.98 0.17 19.10 16 18 F -0.19 -8.87 15.37 44.97 0.69 -8.18 16 19 F -0.18 -6.51 16.95 44.97 0.76 -5.75 16 20 F -0.18 -8.00 14.57 44.97 0.66 -7.35 16 21 C -0.12 -3.81 4.41 30.67 0.14 -3.68 16 22 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.01 0.63 7.82 -2.39 -0.02 0.61 16 28 H 0.05 2.45 6.47 -2.39 -0.02 2.44 16 29 H 0.26 15.57 6.62 -92.71 -0.61 14.95 16 30 H 0.06 2.14 7.66 -2.39 -0.02 2.12 16 31 H 0.09 2.39 7.99 -2.38 -0.02 2.37 16 Total: -1.00 -62.21 256.01 6.49 -55.71 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: 1.28 Total: 1.51 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 2.67 Total: -2.70 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -1.62 Total: -87.16 kcal Atomic # 9 Polarization: -23.39 SS G_CDS: 2.11 Total: -21.28 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.06 Total: 53.91 kcal Total: -62.21 6.49 -55.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177021783.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.828 kcal (2) G-P(sol) polarization free energy of solvation -62.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds