Wall clock time and date at job start Sun Mar 29 2020 21:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53929 * 113.73546 * 278.76330 * 9 7 2 11 11 N 1.48181 * 86.10389 * 221.96025 * 10 9 7 12 12 C 1.46904 * 111.07114 * 137.51831 * 11 10 9 13 13 C 1.53007 * 109.46668 * 90.56996 * 12 11 10 14 14 C 1.53002 * 109.46582 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46878 * 180.02562 * 14 13 12 16 16 F 1.39901 * 109.47378 * 59.99575 * 15 14 13 17 17 F 1.39901 * 109.47067 * 180.02562 * 15 14 13 18 18 F 1.39903 * 109.46754 * 299.99553 * 15 14 13 19 19 C 1.47959 * 90.79999 * 24.60296 * 11 10 9 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 112.93881 * 50.33534 * 9 7 2 22 22 H 1.09002 * 113.76143 * 336.24436 * 10 9 7 23 23 H 1.09000 * 113.75970 * 107.60487 * 10 9 7 24 24 H 1.09001 * 109.47248 * 210.56324 * 12 11 10 25 25 H 1.09000 * 109.47229 * 330.57166 * 12 11 10 26 26 H 1.09001 * 109.46737 * 299.99640 * 13 12 11 27 27 H 1.09000 * 109.47157 * 60.00126 * 13 12 11 28 28 H 1.09001 * 109.47194 * 299.99242 * 14 13 12 29 29 H 1.09000 * 109.47712 * 59.99716 * 14 13 12 30 30 H 1.08999 * 113.75755 * 221.09101 * 19 11 10 31 31 H 1.08993 * 113.76352 * 89.71798 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 0.7547 -2.9293 1.3905 11 7 1.1885 -4.2947 1.0119 12 6 1.8761 -4.9587 2.1274 13 6 0.8566 -5.7294 2.9686 14 6 1.5726 -6.4204 4.1308 15 6 0.5532 -7.1916 4.9717 16 9 -0.0772 -8.1529 4.1744 17 9 1.2079 -7.8230 6.0347 18 9 -0.4031 -6.3033 5.4753 19 6 2.1610 -3.7399 0.0445 20 1 -0.4849 0.8400 0.0004 21 1 0.4840 -2.5461 -0.7748 22 1 1.3264 -2.4991 2.2128 23 1 -0.3227 -2.8304 1.5225 24 1 2.6207 -5.6512 1.7347 25 1 2.3679 -4.2100 2.7484 26 1 0.1120 -5.0369 3.3613 27 1 0.3648 -6.4781 2.3476 28 1 2.3175 -7.1129 3.7385 29 1 2.0642 -5.6715 4.7517 30 1 2.2049 -4.2875 -0.8969 31 1 3.1448 -3.5473 0.4722 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202367630.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:18 Heat of formation + Delta-G solvation = -140.441532 kcal Electronic energy + Delta-G solvation = -16772.726360 eV Core-core repulsion = 13446.462655 eV Total energy + Delta-G solvation = -3326.263705 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.14435 -47.66237 -47.60336 -38.78873 -34.81237 -32.55116 -29.68916 -26.64501 -24.98674 -24.29859 -22.30840 -20.93555 -18.63565 -18.57412 -18.34369 -17.38789 -16.52575 -15.42011 -14.84333 -14.59992 -14.44126 -14.30469 -14.05769 -13.93627 -13.79122 -13.76711 -13.36814 -12.59759 -12.22195 -11.98306 -11.66542 -11.53676 -11.20279 -11.00094 -10.92196 -10.54498 -10.20411 -9.74930 -9.19132 -9.03329 -8.46707 -7.92851 -6.06927 -4.11918 2.72732 3.28380 3.33951 3.35701 3.74914 3.96211 4.00170 4.38408 4.72702 4.89890 5.18152 5.21798 5.26120 5.39489 5.61763 5.85336 6.01140 6.08760 6.29735 6.40263 6.47173 6.62017 6.77684 7.12446 7.19227 7.70249 7.88822 8.04951 8.34359 8.90373 9.53185 11.02492 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.046515 B = 0.004517 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.808131 B = 6197.548479 C = 6348.148843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.038 3.962 10 C 0.012 3.988 11 N -0.494 5.494 12 C 0.026 3.974 13 C -0.115 4.115 14 C -0.165 4.165 15 C 0.451 3.549 16 F -0.184 7.184 17 F -0.190 7.190 18 F -0.183 7.183 19 C -0.001 4.001 20 H 0.262 0.738 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 -12.328 8.594 15.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.116 4.116 11 N -0.216 5.216 12 C -0.103 4.103 13 C -0.153 4.153 14 C -0.203 4.203 15 C 0.397 3.603 16 F -0.166 7.166 17 F -0.172 7.172 18 F -0.165 7.165 19 C -0.130 4.130 20 H 0.072 0.928 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.084 0.916 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.083 -12.717 8.411 15.389 hybrid contribution 0.930 1.274 0.681 1.718 sum 3.013 -11.444 9.092 14.923 Atomic orbital electron populations 1.69954 1.05979 1.26874 1.49537 1.25009 0.94819 0.99120 0.94655 0.86682 0.79654 0.83153 0.78651 1.20152 1.21220 1.20291 1.21053 0.92719 0.90412 1.51685 0.92540 1.20309 0.93737 0.91033 0.92996 1.24165 1.00115 0.86206 1.01133 1.68448 1.26210 1.17478 1.09491 1.22505 0.95513 0.98040 0.94274 1.21489 0.98987 1.00153 0.94654 1.22904 0.97233 1.01418 0.98788 1.20694 0.82300 0.78265 0.78994 1.93179 1.84041 1.65800 1.73555 1.93170 1.80943 1.83679 1.59377 1.93191 1.66736 1.68186 1.88359 1.24054 0.95280 0.98016 0.95629 0.92789 0.92315 0.92725 0.91394 0.91831 0.94062 0.90579 0.90151 0.87478 0.87457 0.91605 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -13.98 8.77 -34.44 -0.30 -14.28 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.04 0.95 3.60 -90.84 -0.33 0.62 16 10 C 0.01 0.28 7.53 -2.64 -0.02 0.26 16 11 N -0.49 -9.66 6.16 -238.15 -1.47 -11.13 16 12 C 0.03 0.40 4.80 -3.82 -0.02 0.38 16 13 C -0.11 -1.52 5.28 -26.73 -0.14 -1.66 16 14 C -0.16 -1.67 5.26 -26.73 -0.14 -1.81 16 15 C 0.45 5.12 3.16 37.16 0.12 5.24 16 16 F -0.18 -2.26 16.80 2.25 0.04 -2.22 16 17 F -0.19 -2.15 17.32 2.25 0.04 -2.11 16 18 F -0.18 -2.35 16.80 2.25 0.04 -2.31 16 19 C 0.00 -0.03 7.50 -2.76 -0.02 -0.05 16 20 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 21 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 22 H 0.05 1.24 7.44 -51.93 -0.39 0.85 16 23 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 24 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 25 H 0.04 0.65 7.39 -51.93 -0.38 0.26 16 26 H 0.08 1.10 7.80 -51.93 -0.41 0.70 16 27 H 0.08 1.09 7.80 -51.93 -0.41 0.68 16 28 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 LS Contribution 275.79 15.07 4.16 4.16 Total: -1.00 -27.98 275.79 -6.50 -34.48 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.07 Total: -2.51 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.95 Total: -9.57 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.73 Total: -35.71 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 0.11 Total: -6.65 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.98 -6.50 -34.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202367630.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.964 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds