Wall clock time and date at job start Sun Mar 29 2020 21:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53929 * 113.73546 * 278.76330 * 9 7 2 11 11 N 1.48181 * 86.10389 * 221.96025 * 10 9 7 12 12 C 1.46904 * 111.07114 * 137.51831 * 11 10 9 13 13 C 1.53007 * 109.46668 * 90.56996 * 12 11 10 14 14 C 1.53002 * 109.46582 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46878 * 180.02562 * 14 13 12 16 16 F 1.39901 * 109.47378 * 59.99575 * 15 14 13 17 17 F 1.39901 * 109.47067 * 180.02562 * 15 14 13 18 18 F 1.39903 * 109.46754 * 299.99553 * 15 14 13 19 19 C 1.47959 * 90.79999 * 24.60296 * 11 10 9 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 112.93881 * 50.33534 * 9 7 2 22 22 H 1.09002 * 113.76143 * 336.24436 * 10 9 7 23 23 H 1.09000 * 113.75970 * 107.60487 * 10 9 7 24 24 H 1.09001 * 109.47248 * 210.56324 * 12 11 10 25 25 H 1.09000 * 109.47229 * 330.57166 * 12 11 10 26 26 H 1.09001 * 109.46737 * 299.99640 * 13 12 11 27 27 H 1.09000 * 109.47157 * 60.00126 * 13 12 11 28 28 H 1.09001 * 109.47194 * 299.99242 * 14 13 12 29 29 H 1.09000 * 109.47712 * 59.99716 * 14 13 12 30 30 H 1.08999 * 113.75755 * 221.09101 * 19 11 10 31 31 H 1.08993 * 113.76352 * 89.71798 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 0.7547 -2.9293 1.3905 11 7 1.1885 -4.2947 1.0119 12 6 1.8761 -4.9587 2.1274 13 6 0.8566 -5.7294 2.9686 14 6 1.5726 -6.4204 4.1308 15 6 0.5532 -7.1916 4.9717 16 9 -0.0772 -8.1529 4.1744 17 9 1.2079 -7.8230 6.0347 18 9 -0.4031 -6.3033 5.4753 19 6 2.1610 -3.7399 0.0445 20 1 -0.4849 0.8400 0.0004 21 1 0.4840 -2.5461 -0.7748 22 1 1.3264 -2.4991 2.2128 23 1 -0.3227 -2.8304 1.5225 24 1 2.6207 -5.6512 1.7347 25 1 2.3679 -4.2100 2.7484 26 1 0.1120 -5.0369 3.3613 27 1 0.3648 -6.4781 2.3476 28 1 2.3175 -7.1129 3.7385 29 1 2.0642 -5.6715 4.7517 30 1 2.2049 -4.2875 -0.8969 31 1 3.1448 -3.5473 0.4722 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202367630.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:18 Heat of formation + Delta-G solvation = -157.942480 kcal Electronic energy + Delta-G solvation = -16773.485258 eV Core-core repulsion = 13446.462655 eV Total energy + Delta-G solvation = -3327.022603 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.06237 -48.56832 -48.54991 -40.43880 -35.97401 -34.49481 -31.10096 -28.25044 -26.72151 -25.81981 -23.50927 -22.16737 -20.41685 -19.51590 -19.28813 -18.67107 -18.15784 -16.72802 -16.50123 -16.13125 -15.64915 -15.47491 -15.36399 -14.99309 -14.77679 -14.71589 -14.62970 -13.91749 -13.77713 -13.37083 -13.13038 -12.92622 -12.83281 -12.61215 -12.35782 -12.27451 -11.59095 -11.50664 -11.08528 -10.87880 -10.49820 -9.57027 -8.13828 -6.25616 1.43992 1.45040 1.52963 1.84226 2.43267 2.83635 3.03074 3.13563 3.16069 3.36402 3.92222 4.07470 4.16915 4.34991 4.42966 4.51869 4.63021 4.65952 4.77007 4.87788 4.98699 5.05656 5.22646 5.28107 5.59000 5.64301 5.86723 6.30716 6.42468 6.83617 7.43133 8.95437 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.046515 B = 0.004517 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.808131 B = 6197.548479 C = 6348.148843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.016 3.984 10 C 0.024 3.976 11 N -0.495 5.495 12 C 0.024 3.976 13 C -0.109 4.109 14 C -0.154 4.154 15 C 0.452 3.548 16 F -0.191 7.191 17 F -0.188 7.188 18 F -0.195 7.195 19 C 0.014 3.986 20 H 0.262 0.738 21 H 0.023 0.977 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.089 0.911 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.523 -12.961 9.249 16.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.105 4.105 11 N -0.217 5.217 12 C -0.104 4.104 13 C -0.147 4.147 14 C -0.192 4.192 15 C 0.398 3.602 16 F -0.172 7.172 17 F -0.170 7.170 18 F -0.177 7.177 19 C -0.114 4.114 20 H 0.071 0.929 21 H 0.041 0.959 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.107 0.893 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.152 0.848 29 H 0.141 0.859 30 H 0.097 0.903 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.867 -13.369 9.070 16.611 hybrid contribution 0.363 1.404 0.469 1.524 sum 4.230 -11.965 9.539 15.876 Atomic orbital electron populations 1.70088 1.07561 1.27607 1.50870 1.25825 0.95574 1.02687 0.94412 0.85634 0.78357 0.78779 0.79031 1.19398 1.21221 1.19364 1.21423 0.93072 0.91566 1.51101 0.92167 1.20323 0.94254 0.92499 0.93274 1.23867 0.98784 0.88218 0.99644 1.68364 1.26772 1.15666 1.10901 1.22601 0.96260 0.98373 0.93217 1.21360 0.98331 0.99624 0.95408 1.22859 0.96838 1.01979 0.97560 1.20870 0.82200 0.78091 0.79065 1.93169 1.84265 1.66099 1.73700 1.93174 1.80803 1.83647 1.59354 1.93173 1.67353 1.68567 1.88558 1.23914 0.95042 0.95762 0.96689 0.92904 0.95924 0.93000 0.93402 0.89267 0.93833 0.92398 0.90500 0.84838 0.85901 0.90279 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.82 13.29 21.45 0.28 -53.53 16 2 C 0.01 0.78 5.46 84.66 0.46 1.25 16 3 Si 0.96 42.60 29.54 68.60 2.03 44.62 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.53 -28.70 8.77 25.60 0.22 -28.47 16 8 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.02 0.78 3.60 -10.89 -0.04 0.74 16 10 C 0.02 1.09 7.53 86.37 0.65 1.74 16 11 N -0.49 -18.78 6.16 -907.37 -5.59 -24.37 16 12 C 0.02 0.68 4.80 86.30 0.41 1.10 16 13 C -0.11 -2.67 5.28 30.60 0.16 -2.50 16 14 C -0.15 -2.65 5.26 30.60 0.16 -2.49 16 15 C 0.45 9.35 3.16 71.98 0.23 9.58 16 16 F -0.19 -4.37 16.80 44.97 0.76 -3.61 16 17 F -0.19 -3.85 17.32 44.97 0.78 -3.07 16 18 F -0.19 -4.79 16.80 44.97 0.76 -4.03 16 19 C 0.01 0.57 7.50 86.41 0.65 1.22 16 20 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 21 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.05 2.35 7.44 -2.39 -0.02 2.33 16 23 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.09 2.11 8.08 -2.39 -0.02 2.10 16 25 H 0.04 1.24 7.39 -2.39 -0.02 1.22 16 26 H 0.06 1.63 7.80 -2.39 -0.02 1.61 16 27 H 0.08 1.94 7.80 -2.39 -0.02 1.92 16 28 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.07 2.47 7.87 -2.39 -0.02 2.46 16 Total: -1.00 -60.12 275.79 3.04 -57.08 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.12 Total: 4.76 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 2.91 Total: -17.85 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -5.30 Total: -77.90 kcal Atomic # 9 Polarization: -13.00 SS G_CDS: 2.29 Total: -10.71 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -60.12 3.04 -57.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202367630.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.861 kcal (2) G-P(sol) polarization free energy of solvation -60.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds