Wall clock time and date at job start Sun Mar 29 2020 21:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46876 * 2 1 4 4 C 1.52998 * 109.47138 * 239.99795 * 2 1 3 5 5 N 1.46902 * 109.47042 * 65.00079 * 4 2 1 6 6 C 1.47961 * 111.00005 * 169.99741 * 5 4 2 7 7 C 1.53934 * 86.17939 * 137.58072 * 6 5 4 8 8 C 1.50703 * 113.73399 * 221.81705 * 7 6 5 9 9 H 1.07999 * 119.99920 * 358.09577 * 8 7 6 10 10 C 1.37877 * 119.99669 * 178.10223 * 8 7 6 11 11 N 1.31510 * 120.00506 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99624 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47014 * 59.99839 * 12 10 8 14 14 H 1.48503 * 109.47043 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47160 * 300.00101 * 12 10 8 16 16 C 1.48296 * 111.00409 * 269.35042 * 5 4 2 17 17 C 1.52998 * 109.47315 * 119.99763 * 2 1 3 18 18 F 1.39900 * 109.47445 * 180.02562 * 17 2 1 19 19 F 1.39899 * 109.47209 * 300.00336 * 17 2 1 20 20 F 1.39907 * 109.47328 * 59.99863 * 17 2 1 21 21 H 1.08993 * 109.47551 * 60.00325 * 1 2 3 22 22 H 1.09008 * 109.47132 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47504 * 300.00089 * 1 2 3 24 24 H 1.09001 * 109.47203 * 304.99789 * 4 2 1 25 25 H 1.09004 * 109.46772 * 185.00050 * 4 2 1 26 26 H 1.09007 * 113.75652 * 23.26342 * 6 5 4 27 27 H 1.08993 * 113.76177 * 251.90248 * 6 5 4 28 28 H 1.09002 * 113.73279 * 90.64057 * 7 6 5 29 29 H 0.96995 * 120.00309 * 180.02562 * 11 10 8 30 30 H 1.09001 * 113.86054 * 108.14174 * 16 5 4 31 31 H 1.09000 * 113.76062 * 336.68481 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6513 0.0374 -2.4456 6 6 2.3243 -0.4933 -3.6518 7 6 0.9670 -0.3236 -4.3579 8 6 0.6057 -1.4736 -5.2623 9 1 1.2923 -2.2977 -5.3884 10 6 -0.6012 -1.4736 -5.9289 11 7 -1.4369 -0.4698 -5.7759 12 14 -1.0487 -2.8988 -7.0505 13 1 -1.0729 -4.1586 -6.2645 14 1 -2.3891 -2.6600 -7.6435 15 1 -0.0400 -3.0111 -8.1346 16 6 0.3348 -0.4146 -2.9573 17 6 2.0400 -0.7212 1.2492 18 9 3.4390 -0.7207 1.2496 19 9 1.5736 -0.0617 2.3915 20 9 1.5737 -2.0402 1.2494 21 1 -0.3634 0.5137 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.6054 -1.7199 -1.2951 25 1 3.1263 -0.7995 -1.2055 26 1 2.6427 -1.5314 -3.5560 27 1 3.1064 0.1585 -4.0410 28 1 0.8390 0.6483 -4.8347 29 1 -2.2862 -0.4699 -6.2445 30 1 -0.4714 0.3001 -2.7920 31 1 0.0727 -1.4296 -2.6589 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208887849.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:58 Heat of formation + Delta-G solvation = -134.682598 kcal Electronic energy + Delta-G solvation = -17447.070293 eV Core-core repulsion = 14121.056314 eV Total energy + Delta-G solvation = -3326.013979 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.03310 -47.52670 -47.48751 -38.99836 -34.82150 -32.48583 -28.80492 -26.63637 -25.39416 -24.83574 -22.65081 -20.61769 -18.72937 -18.39257 -18.22144 -17.15327 -16.55948 -15.24341 -14.72892 -14.63427 -14.36264 -14.04928 -13.97173 -13.92707 -13.67379 -13.63528 -12.98981 -12.69913 -12.24614 -11.97612 -11.59724 -11.43935 -11.16595 -11.01767 -10.91544 -10.59015 -10.29806 -9.76280 -9.24728 -9.06326 -8.49039 -8.01467 -6.09483 -4.14195 2.85449 3.27636 3.32992 3.35188 3.86828 4.10567 4.17210 4.37434 4.84531 5.00185 5.09950 5.21168 5.35622 5.67399 5.79471 5.88853 5.96637 6.13638 6.28614 6.33307 6.41943 6.58371 6.69038 7.05283 7.10872 7.67645 7.83887 7.96634 8.31297 8.88038 9.51119 10.99931 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.044707 B = 0.005651 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.155808 B = 4953.736491 C = 5006.576273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 H 0.117 0.883 4 C 0.023 3.977 5 N -0.488 5.488 6 C 0.000 4.000 7 C 0.038 3.962 8 C -0.521 4.521 9 H 0.057 0.943 10 C 0.067 3.933 11 N -0.887 5.887 12 Si 0.891 3.109 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.013 3.987 17 C 0.452 3.548 18 F -0.187 7.187 19 F -0.187 7.187 20 F -0.184 7.184 21 H 0.093 0.907 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.263 0.737 30 H 0.071 0.929 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.723 0.386 11.763 12.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 H 0.135 0.865 4 C -0.107 4.107 5 N -0.211 5.211 6 C -0.129 4.129 7 C 0.019 3.981 8 C -0.559 4.559 9 H 0.075 0.925 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.718 3.282 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.116 4.116 17 C 0.397 3.603 18 F -0.168 7.168 19 F -0.169 7.169 20 F -0.166 7.166 21 H 0.112 0.888 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.652 1.116 11.943 12.866 hybrid contribution -0.277 -1.810 -0.363 1.867 sum 4.375 -0.694 11.581 12.399 Atomic orbital electron populations 1.21967 0.91562 1.03519 1.04163 1.22376 0.99762 1.01760 0.90440 0.86479 1.22601 1.00414 0.96096 0.91561 1.68493 1.06610 1.45903 1.00106 1.24075 0.99939 0.97522 0.91317 1.20317 0.87955 0.98399 0.91399 1.21052 1.02671 1.05160 1.26989 0.92491 1.24998 0.96476 0.95848 0.96232 1.69942 1.09381 1.30501 1.42559 0.86685 0.77638 0.82768 0.81076 1.20258 1.21215 1.20143 1.24268 0.90866 0.97768 0.98671 1.20839 0.75258 0.77803 0.86398 1.93157 1.30392 1.96452 1.96833 1.93149 1.88530 1.80835 1.54374 1.93162 1.88443 1.38116 1.96833 0.88829 0.91751 0.92061 0.92951 0.90932 0.92524 0.91392 0.92237 0.92777 0.91094 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 8.27 37.16 0.31 -1.81 16 2 C -0.12 -1.71 2.57 -90.62 -0.23 -1.94 16 3 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 4 C 0.02 0.36 4.16 -3.82 -0.02 0.35 16 5 N -0.49 -9.21 6.04 -238.04 -1.44 -10.65 16 6 C 0.00 0.00 7.50 -2.76 -0.02 -0.02 16 7 C 0.04 0.92 3.60 -90.84 -0.33 0.60 16 8 C -0.52 -13.80 8.77 -34.44 -0.30 -14.10 16 9 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 10 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 11 N -0.89 -24.89 13.29 55.43 0.74 -24.15 16 12 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 C 0.01 0.27 5.74 -2.57 -0.01 0.26 16 17 C 0.45 6.10 2.69 37.16 0.10 6.20 16 18 F -0.19 -2.58 16.71 2.25 0.04 -2.54 16 19 F -0.19 -2.48 16.80 2.25 0.04 -2.45 16 20 F -0.18 -2.64 16.37 2.25 0.04 -2.60 16 21 H 0.09 1.41 5.65 -51.93 -0.29 1.12 16 22 H 0.06 0.89 7.80 -51.92 -0.41 0.49 16 23 H 0.06 0.73 7.80 -51.93 -0.41 0.32 16 24 H 0.05 0.88 7.18 -51.93 -0.37 0.51 16 25 H 0.07 1.11 7.60 -51.93 -0.39 0.71 16 26 H 0.06 1.12 7.88 -51.92 -0.41 0.71 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.07 1.55 7.10 -51.93 -0.37 1.19 16 31 H 0.06 1.26 7.43 -51.93 -0.39 0.87 16 LS Contribution 267.83 15.07 4.04 4.04 Total: -1.00 -26.74 267.83 -6.03 -32.77 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -3.85 Total: -1.33 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.60 Total: -8.76 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: -0.70 Total: -34.81 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 0.11 Total: -7.59 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -26.74 -6.03 -32.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208887849.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.916 kcal (2) G-P(sol) polarization free energy of solvation -26.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds