Wall clock time and date at job start Sun Mar 29 2020 21:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46876 * 2 1 4 4 C 1.52998 * 109.47138 * 239.99795 * 2 1 3 5 5 N 1.46902 * 109.47042 * 65.00079 * 4 2 1 6 6 C 1.47961 * 111.00005 * 169.99741 * 5 4 2 7 7 C 1.53934 * 86.17939 * 137.58072 * 6 5 4 8 8 C 1.50703 * 113.73399 * 221.81705 * 7 6 5 9 9 H 1.07999 * 119.99920 * 358.09577 * 8 7 6 10 10 C 1.37877 * 119.99669 * 178.10223 * 8 7 6 11 11 N 1.31510 * 120.00506 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99624 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47014 * 59.99839 * 12 10 8 14 14 H 1.48503 * 109.47043 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47160 * 300.00101 * 12 10 8 16 16 C 1.48296 * 111.00409 * 269.35042 * 5 4 2 17 17 C 1.52998 * 109.47315 * 119.99763 * 2 1 3 18 18 F 1.39900 * 109.47445 * 180.02562 * 17 2 1 19 19 F 1.39899 * 109.47209 * 300.00336 * 17 2 1 20 20 F 1.39907 * 109.47328 * 59.99863 * 17 2 1 21 21 H 1.08993 * 109.47551 * 60.00325 * 1 2 3 22 22 H 1.09008 * 109.47132 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47504 * 300.00089 * 1 2 3 24 24 H 1.09001 * 109.47203 * 304.99789 * 4 2 1 25 25 H 1.09004 * 109.46772 * 185.00050 * 4 2 1 26 26 H 1.09007 * 113.75652 * 23.26342 * 6 5 4 27 27 H 1.08993 * 113.76177 * 251.90248 * 6 5 4 28 28 H 1.09002 * 113.73279 * 90.64057 * 7 6 5 29 29 H 0.96995 * 120.00309 * 180.02562 * 11 10 8 30 30 H 1.09001 * 113.86054 * 108.14174 * 16 5 4 31 31 H 1.09000 * 113.76062 * 336.68481 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6513 0.0374 -2.4456 6 6 2.3243 -0.4933 -3.6518 7 6 0.9670 -0.3236 -4.3579 8 6 0.6057 -1.4736 -5.2623 9 1 1.2923 -2.2977 -5.3884 10 6 -0.6012 -1.4736 -5.9289 11 7 -1.4369 -0.4698 -5.7759 12 14 -1.0487 -2.8988 -7.0505 13 1 -1.0729 -4.1586 -6.2645 14 1 -2.3891 -2.6600 -7.6435 15 1 -0.0400 -3.0111 -8.1346 16 6 0.3348 -0.4146 -2.9573 17 6 2.0400 -0.7212 1.2492 18 9 3.4390 -0.7207 1.2496 19 9 1.5736 -0.0617 2.3915 20 9 1.5737 -2.0402 1.2494 21 1 -0.3634 0.5137 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.6054 -1.7199 -1.2951 25 1 3.1263 -0.7995 -1.2055 26 1 2.6427 -1.5314 -3.5560 27 1 3.1064 0.1585 -4.0410 28 1 0.8390 0.6483 -4.8347 29 1 -2.2862 -0.4699 -6.2445 30 1 -0.4714 0.3001 -2.7920 31 1 0.0727 -1.4296 -2.6589 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208887849.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:58 Heat of formation + Delta-G solvation = -151.087114 kcal Electronic energy + Delta-G solvation = -17447.781646 eV Core-core repulsion = 14121.056314 eV Total energy + Delta-G solvation = -3326.725332 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.11990 -48.59839 -48.58699 -40.61187 -36.15736 -34.43468 -30.42347 -27.98461 -27.02545 -26.42903 -24.21814 -21.86039 -20.47382 -19.50852 -19.34905 -18.50559 -18.30398 -16.77268 -16.37079 -16.11261 -15.69692 -15.46205 -15.24898 -15.03019 -14.76735 -14.73561 -14.36172 -14.09081 -13.80012 -13.51354 -13.22862 -12.91409 -12.87523 -12.59143 -12.36899 -12.19395 -11.82001 -11.50259 -11.08635 -10.89806 -10.48991 -9.65142 -8.14104 -6.24876 1.44040 1.44415 1.52258 1.74576 2.42992 2.72315 2.97157 3.08276 3.16098 3.40068 3.81498 3.85503 4.19499 4.29482 4.38766 4.51814 4.62414 4.75787 4.79491 4.87248 4.90855 5.00580 5.14880 5.35777 5.47311 5.64917 5.87216 6.30969 6.31177 6.83415 7.43456 8.94949 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.044707 B = 0.005651 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.155808 B = 4953.736491 C = 5006.576273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 H 0.130 0.870 4 C 0.022 3.978 5 N -0.480 5.480 6 C 0.012 3.988 7 C 0.017 3.983 8 C -0.535 4.535 9 H 0.057 0.943 10 C 0.018 3.982 11 N -0.919 5.919 12 Si 0.953 3.047 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.270 1.270 16 C 0.029 3.971 17 C 0.459 3.541 18 F -0.186 7.186 19 F -0.183 7.183 20 F -0.189 7.189 21 H 0.076 0.924 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.046 0.954 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.028 0.972 29 H 0.263 0.737 30 H 0.061 0.939 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -0.188 12.545 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.138 4.138 3 H 0.148 0.852 4 C -0.107 4.107 5 N -0.202 5.202 6 C -0.116 4.116 7 C -0.003 4.003 8 C -0.573 4.573 9 H 0.075 0.925 10 C -0.182 4.182 11 N -0.558 5.558 12 Si 0.778 3.222 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.195 1.195 16 C -0.100 4.100 17 C 0.405 3.595 18 F -0.168 7.168 19 F -0.165 7.165 20 F -0.170 7.170 21 H 0.095 0.905 22 H 0.078 0.922 23 H 0.099 0.901 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.349 0.539 12.735 13.823 hybrid contribution -0.450 -1.604 -0.578 1.763 sum 4.899 -1.065 12.157 13.150 Atomic orbital electron populations 1.21927 0.91499 1.03275 1.04313 1.22299 0.99758 1.02147 0.89572 0.85239 1.22621 1.01318 0.95650 0.91089 1.68421 1.04812 1.46140 1.00860 1.23956 0.98367 0.98311 0.90998 1.20328 0.91482 0.96147 0.92301 1.21408 1.02731 1.05749 1.27408 0.92487 1.25752 0.96517 0.98195 0.97726 1.70058 1.09746 1.32274 1.43682 0.85698 0.77324 0.79858 0.79303 1.19621 1.21058 1.19540 1.23952 0.91773 0.97115 0.97168 1.20643 0.75173 0.77465 0.86238 1.93163 1.30374 1.96429 1.96830 1.93160 1.88487 1.80723 1.54089 1.93159 1.88511 1.38517 1.96850 0.90478 0.92217 0.90096 0.93558 0.89517 0.91922 0.89926 0.95408 0.92845 0.92053 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 8.27 71.98 0.60 -3.35 16 2 C -0.12 -3.00 2.57 -10.80 -0.03 -3.03 16 3 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 4 C 0.02 0.67 4.16 86.30 0.36 1.03 16 5 N -0.48 -17.55 6.04 -907.02 -5.48 -23.03 16 6 C 0.01 0.47 7.50 86.41 0.65 1.12 16 7 C 0.02 0.80 3.60 -10.89 -0.04 0.76 16 8 C -0.53 -28.46 8.77 25.60 0.22 -28.23 16 9 H 0.06 2.96 7.81 -2.91 -0.02 2.93 16 10 C 0.02 0.96 5.46 84.66 0.46 1.42 16 11 N -0.92 -52.37 13.29 21.45 0.28 -52.08 16 12 Si 0.95 42.38 29.54 68.60 2.03 44.40 16 13 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 14 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 16 C 0.03 1.24 5.74 86.34 0.50 1.73 16 17 C 0.46 11.30 2.69 71.98 0.19 11.49 16 18 F -0.19 -4.67 16.71 44.97 0.75 -3.91 16 19 F -0.18 -4.39 16.80 44.97 0.76 -3.63 16 20 F -0.19 -5.04 16.37 44.97 0.74 -4.30 16 21 H 0.08 2.27 5.65 -2.39 -0.01 2.25 16 22 H 0.06 1.58 7.80 -2.38 -0.02 1.56 16 23 H 0.08 1.75 7.80 -2.39 -0.02 1.73 16 24 H 0.05 1.48 7.18 -2.39 -0.02 1.46 16 25 H 0.09 2.40 7.60 -2.39 -0.02 2.38 16 26 H 0.06 2.38 7.88 -2.38 -0.02 2.36 16 27 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.06 2.74 7.10 -2.39 -0.02 2.72 16 31 H 0.05 2.20 7.43 -2.39 -0.02 2.19 16 Total: -1.00 -55.94 267.83 3.12 -52.83 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.13 Total: 6.77 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 2.91 Total: -17.05 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -5.20 Total: -75.11 kcal Atomic # 9 Polarization: -14.09 SS G_CDS: 2.24 Total: -11.84 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -55.94 3.12 -52.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208887849.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.259 kcal (2) G-P(sol) polarization free energy of solvation -55.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds