Wall clock time and date at job start Sun Mar 29 2020 21:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46892 * 109.47486 * 295.00155 * 4 2 1 6 6 C 1.47481 * 111.00316 * 265.97174 * 5 4 2 7 7 C 1.53505 * 87.93522 * 221.29278 * 6 5 4 8 8 C 1.50703 * 114.34452 * 139.68253 * 7 6 5 9 9 H 1.08003 * 120.00002 * 266.08274 * 8 7 6 10 10 C 1.37877 * 120.00193 * 86.07393 * 8 7 6 11 11 N 1.31514 * 119.99788 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99868 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.46896 * 89.99769 * 12 10 8 14 14 H 1.48502 * 109.46836 * 209.99804 * 12 10 8 15 15 H 1.48499 * 109.46938 * 329.99987 * 12 10 8 16 16 C 1.47481 * 111.00354 * 170.00026 * 5 4 2 17 17 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 18 18 F 1.39898 * 109.46890 * 60.00473 * 17 2 1 19 19 F 1.39904 * 109.47059 * 179.97438 * 17 2 1 20 20 F 1.39895 * 109.47411 * 300.00155 * 17 2 1 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 25 25 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 26 26 H 1.09005 * 113.47565 * 336.06127 * 6 5 4 27 27 H 1.09006 * 113.47759 * 106.52095 * 6 5 4 28 28 H 1.09000 * 114.17489 * 272.37398 * 7 6 5 29 29 H 0.97000 * 119.99775 * 180.02562 * 11 10 8 30 30 H 1.09000 * 113.47471 * 253.46691 * 16 5 4 31 31 H 1.09000 * 113.47393 * 23.87558 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.7283 0.9545 2.8630 7 6 2.4288 0.5564 4.3150 8 6 3.6533 0.3738 5.1742 9 1 4.0890 -0.6074 5.2920 10 6 4.2175 1.4595 5.8099 11 7 5.2864 1.3001 6.5594 12 14 3.4637 3.1565 5.6067 13 1 2.4483 3.3773 6.6675 14 1 4.5273 4.1870 5.7172 15 1 2.8164 3.2541 4.2738 16 6 1.9134 -0.7388 3.6720 17 6 2.0401 -0.7213 -1.2492 18 9 1.5738 -0.0618 -2.3915 19 9 3.4391 -0.7208 -1.2494 20 9 1.5738 -2.0403 -1.2492 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.6053 -1.7198 1.2952 25 1 3.1263 -0.7995 1.2056 26 1 3.7171 0.6462 2.5233 27 1 2.5152 2.0014 2.6469 28 1 1.6542 1.1570 4.7918 29 1 5.6832 2.0638 7.0069 30 1 1.0095 -1.1269 4.1416 31 1 2.6839 -1.4997 3.5479 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208887946.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:00 Heat of formation + Delta-G solvation = -130.660547 kcal Electronic energy + Delta-G solvation = -17412.951572 eV Core-core repulsion = 14087.112002 eV Total energy + Delta-G solvation = -3325.839570 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.10452 -47.59346 -47.56143 -39.36868 -35.07428 -32.50850 -29.29834 -26.54733 -25.59716 -25.12456 -22.62322 -20.63271 -18.77728 -18.48450 -18.31473 -17.27386 -17.05781 -15.21839 -15.10425 -14.57830 -14.43423 -14.09478 -13.99528 -13.75075 -13.73851 -13.64197 -13.46010 -12.88854 -12.66252 -12.11118 -11.78768 -11.69126 -11.28301 -11.11072 -10.99286 -10.37820 -10.01679 -9.97298 -9.59261 -9.19478 -8.61197 -8.29379 -6.14910 -4.16021 2.77207 3.26039 3.34862 3.38032 3.77810 4.01205 4.08242 4.37596 4.76057 4.79906 5.02997 5.11872 5.22632 5.49460 5.64810 5.77869 5.83455 5.89498 6.05629 6.17931 6.24588 6.33493 6.43544 6.66160 6.84723 7.28086 7.61070 7.71964 8.43609 8.88093 9.47607 10.97540 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.041227 B = 0.005955 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.000895 B = 4700.735190 C = 4717.321781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 H 0.112 0.888 4 C 0.021 3.979 5 N -0.479 5.479 6 C -0.015 4.015 7 C 0.002 3.998 8 C -0.513 4.513 9 H 0.074 0.926 10 C 0.074 3.926 11 N -0.897 5.897 12 Si 0.877 3.123 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.258 1.258 16 C 0.011 3.989 17 C 0.452 3.548 18 F -0.187 7.187 19 F -0.184 7.184 20 F -0.184 7.184 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.265 0.735 30 H 0.069 0.931 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 -2.259 -13.992 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 H 0.130 0.870 4 C -0.109 4.109 5 N -0.201 5.201 6 C -0.144 4.144 7 C -0.018 4.018 8 C -0.551 4.551 9 H 0.092 0.908 10 C -0.129 4.129 11 N -0.535 5.535 12 Si 0.704 3.296 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.182 1.182 16 C -0.118 4.118 17 C 0.397 3.603 18 F -0.168 7.168 19 F -0.166 7.166 20 F -0.166 7.166 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.110 0.890 24 H 0.096 0.904 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.723 -1.952 -14.089 16.685 hybrid contribution 0.764 0.440 -0.306 0.933 sum -7.959 -1.512 -14.395 16.518 Atomic orbital electron populations 1.21744 0.91196 1.03186 1.03741 1.22346 1.00059 1.01592 0.90541 0.86955 1.22648 0.99433 0.97608 0.91185 1.68771 1.39419 1.11784 1.00157 1.24523 0.92771 0.96997 1.00097 1.20493 0.97007 0.92681 0.91609 1.20913 1.09654 0.96467 1.28070 0.90769 1.25024 0.94556 0.99195 0.94104 1.69910 1.21247 1.31325 1.30985 0.86858 0.79132 0.83996 0.79618 1.20270 1.21495 1.18191 1.23801 0.99362 0.98063 0.90529 1.20787 0.75434 0.77734 0.86323 1.93152 1.88537 1.80819 1.54330 1.93183 1.30179 1.96417 1.96804 1.93150 1.88465 1.38138 1.96836 0.92275 0.91912 0.89037 0.90434 0.92619 0.91482 0.91685 0.92487 0.92540 0.91291 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.84 37.16 0.33 -1.28 16 2 C -0.13 -1.60 2.57 -90.62 -0.23 -1.84 16 3 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.02 0.31 3.96 -3.83 -0.02 0.29 16 5 N -0.48 -8.34 5.79 -244.64 -1.42 -9.76 16 6 C -0.01 -0.30 6.70 -7.55 -0.05 -0.35 16 7 C 0.00 0.03 2.95 -91.24 -0.27 -0.23 16 8 C -0.51 -13.82 9.38 -34.44 -0.32 -14.14 16 9 H 0.07 2.17 8.06 -52.48 -0.42 1.75 16 10 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 11 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 12 Si 0.88 20.72 27.14 -169.99 -4.61 16.11 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.26 -5.73 5.68 56.52 0.32 -5.41 16 16 C 0.01 0.21 7.25 -7.55 -0.05 0.15 16 17 C 0.45 5.79 2.69 37.16 0.10 5.89 16 18 F -0.19 -2.36 16.80 2.25 0.04 -2.32 16 19 F -0.18 -2.58 16.71 2.25 0.04 -2.54 16 20 F -0.18 -2.40 16.37 2.25 0.04 -2.37 16 21 H 0.06 0.59 7.80 -51.93 -0.41 0.19 16 22 H 0.06 0.68 7.80 -51.93 -0.41 0.28 16 23 H 0.09 1.11 7.75 -51.93 -0.40 0.71 16 24 H 0.08 1.09 7.88 -51.93 -0.41 0.68 16 25 H 0.06 0.88 6.82 -51.92 -0.35 0.52 16 26 H 0.07 1.38 7.38 -51.93 -0.38 1.00 16 27 H 0.06 1.29 7.11 -51.93 -0.37 0.92 16 28 H 0.06 1.29 7.04 -51.93 -0.37 0.92 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.21 7.87 -51.93 -0.41 0.80 16 LS Contribution 266.57 15.07 4.02 4.02 Total: -1.00 -27.95 266.57 -5.73 -33.67 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -3.99 Total: -1.33 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -0.61 Total: -9.54 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.64 Total: -35.69 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.11 Total: -7.23 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.61 Total: 16.11 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.95 -5.73 -33.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208887946.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.987 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds