Wall clock time and date at job start Sun Mar 29 2020 21:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 N 1.46892 * 109.47486 * 295.00155 * 4 2 1 6 6 C 1.47481 * 111.00316 * 265.97174 * 5 4 2 7 7 C 1.53505 * 87.93522 * 221.29278 * 6 5 4 8 8 C 1.50703 * 114.34452 * 139.68253 * 7 6 5 9 9 H 1.08003 * 120.00002 * 266.08274 * 8 7 6 10 10 C 1.37877 * 120.00193 * 86.07393 * 8 7 6 11 11 N 1.31514 * 119.99788 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99868 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.46896 * 89.99769 * 12 10 8 14 14 H 1.48502 * 109.46836 * 209.99804 * 12 10 8 15 15 H 1.48499 * 109.46938 * 329.99987 * 12 10 8 16 16 C 1.47481 * 111.00354 * 170.00026 * 5 4 2 17 17 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 18 18 F 1.39898 * 109.46890 * 60.00473 * 17 2 1 19 19 F 1.39904 * 109.47059 * 179.97438 * 17 2 1 20 20 F 1.39895 * 109.47411 * 300.00155 * 17 2 1 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 25 25 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 26 26 H 1.09005 * 113.47565 * 336.06127 * 6 5 4 27 27 H 1.09006 * 113.47759 * 106.52095 * 6 5 4 28 28 H 1.09000 * 114.17489 * 272.37398 * 7 6 5 29 29 H 0.97000 * 119.99775 * 180.02562 * 11 10 8 30 30 H 1.09000 * 113.47471 * 253.46691 * 16 5 4 31 31 H 1.09000 * 113.47393 * 23.87558 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.7283 0.9545 2.8630 7 6 2.4288 0.5564 4.3150 8 6 3.6533 0.3738 5.1742 9 1 4.0890 -0.6074 5.2920 10 6 4.2175 1.4595 5.8099 11 7 5.2864 1.3001 6.5594 12 14 3.4637 3.1565 5.6067 13 1 2.4483 3.3773 6.6675 14 1 4.5273 4.1870 5.7172 15 1 2.8164 3.2541 4.2738 16 6 1.9134 -0.7388 3.6720 17 6 2.0401 -0.7213 -1.2492 18 9 1.5738 -0.0618 -2.3915 19 9 3.4391 -0.7208 -1.2494 20 9 1.5738 -2.0403 -1.2492 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.6053 -1.7198 1.2952 25 1 3.1263 -0.7995 1.2056 26 1 3.7171 0.6462 2.5233 27 1 2.5152 2.0014 2.6469 28 1 1.6542 1.1570 4.7918 29 1 5.6832 2.0638 7.0069 30 1 1.0095 -1.1269 4.1416 31 1 2.6839 -1.4997 3.5479 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208887946.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:00 Heat of formation + Delta-G solvation = -148.962764 kcal Electronic energy + Delta-G solvation = -17413.745215 eV Core-core repulsion = 14087.112002 eV Total energy + Delta-G solvation = -3326.633214 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.13277 -48.62178 -48.59460 -40.89286 -36.26029 -34.53579 -30.88965 -27.70541 -27.06716 -26.70329 -24.11276 -21.80201 -20.45791 -19.56033 -19.38932 -18.99122 -18.33232 -16.78430 -16.53918 -15.91109 -15.62975 -15.33842 -15.21295 -15.03566 -14.86916 -14.76034 -14.74158 -14.53234 -13.92404 -13.49513 -13.25940 -13.12221 -12.71984 -12.42055 -12.25328 -11.92144 -11.77997 -11.59068 -11.36469 -11.07419 -10.63986 -9.82597 -8.28209 -6.33929 1.40557 1.42311 1.54429 1.73971 2.39155 2.70676 2.95466 3.05653 3.06962 3.41109 3.70270 3.92343 4.10108 4.20279 4.29374 4.39591 4.60893 4.66030 4.72443 4.88092 4.90726 4.98040 5.04767 5.30460 5.37364 5.49414 5.64306 6.17328 6.30369 6.72478 7.33362 8.87885 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.041227 B = 0.005955 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.000895 B = 4700.735190 C = 4717.321781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 H 0.116 0.884 4 C 0.020 3.980 5 N -0.462 5.462 6 C -0.006 4.006 7 C -0.015 4.015 8 C -0.516 4.516 9 H 0.032 0.968 10 C 0.013 3.987 11 N -0.950 5.950 12 Si 0.944 3.056 13 H -0.271 1.271 14 H -0.291 1.291 15 H -0.232 1.232 16 C 0.017 3.983 17 C 0.456 3.544 18 F -0.183 7.183 19 F -0.193 7.193 20 F -0.185 7.185 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.266 0.734 30 H 0.088 0.912 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.138 -1.405 -15.593 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.140 4.140 3 H 0.134 0.866 4 C -0.110 4.110 5 N -0.183 5.183 6 C -0.136 4.136 7 C -0.034 4.034 8 C -0.554 4.554 9 H 0.050 0.950 10 C -0.184 4.184 11 N -0.590 5.590 12 Si 0.767 3.233 13 H -0.196 1.196 14 H -0.218 1.218 15 H -0.154 1.154 16 C -0.111 4.111 17 C 0.402 3.598 18 F -0.165 7.165 19 F -0.174 7.174 20 F -0.166 7.166 21 H 0.092 0.908 22 H 0.086 0.914 23 H 0.105 0.895 24 H 0.107 0.893 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.684 -1.117 -15.714 19.035 hybrid contribution 1.392 0.049 0.180 1.404 sum -9.292 -1.068 -15.534 18.132 Atomic orbital electron populations 1.21735 0.89749 1.03714 1.04262 1.22296 1.01146 1.01327 0.89247 0.86589 1.22671 0.99102 0.98215 0.90975 1.68732 1.38007 1.11108 1.00497 1.24293 0.93119 0.98102 0.98040 1.20507 0.95301 0.95437 0.92154 1.21168 1.11008 0.94669 1.28539 0.94970 1.25944 0.94917 1.03738 0.93813 1.70066 1.23357 1.32654 1.32893 0.85790 0.78267 0.78286 0.80923 1.19592 1.21768 1.15429 1.23689 0.99813 0.96614 0.91008 1.20737 0.74991 0.77681 0.86429 1.93161 1.88434 1.80740 1.54138 1.93173 1.30967 1.96450 1.96847 1.93153 1.88405 1.38232 1.96848 0.90755 0.91417 0.89518 0.89265 0.93599 0.92604 0.90687 0.91942 0.92537 0.89407 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.84 71.98 0.64 -2.02 16 2 C -0.12 -2.73 2.57 -10.79 -0.03 -2.76 16 3 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 4 C 0.02 0.54 3.96 86.30 0.34 0.88 16 5 N -0.46 -14.88 5.79 -927.91 -5.37 -20.25 16 6 C -0.01 -0.24 6.70 83.57 0.56 0.32 16 7 C -0.01 -0.64 2.95 -11.20 -0.03 -0.67 16 8 C -0.52 -28.26 9.38 25.60 0.24 -28.02 16 9 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 10 C 0.01 0.75 5.47 84.65 0.46 1.21 16 11 N -0.95 -58.19 13.96 21.45 0.30 -57.89 16 12 Si 0.94 42.27 27.14 68.60 1.86 44.13 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 15 H -0.23 -9.28 5.68 99.48 0.56 -8.72 16 16 C 0.02 0.63 7.25 83.57 0.61 1.24 16 17 C 0.46 10.60 2.69 71.98 0.19 10.79 16 18 F -0.18 -4.15 16.80 44.97 0.76 -3.39 16 19 F -0.19 -5.07 16.71 44.97 0.75 -4.32 16 20 F -0.18 -4.38 16.37 44.97 0.74 -3.64 16 21 H 0.07 1.23 7.80 -2.39 -0.02 1.21 16 22 H 0.07 1.25 7.80 -2.39 -0.02 1.23 16 23 H 0.09 1.80 7.75 -2.39 -0.02 1.78 16 24 H 0.09 2.27 7.88 -2.39 -0.02 2.26 16 25 H 0.05 1.38 6.82 -2.38 -0.02 1.36 16 26 H 0.06 2.25 7.38 -2.38 -0.02 2.23 16 27 H 0.07 2.72 7.11 -2.38 -0.02 2.70 16 28 H 0.06 2.67 7.04 -2.39 -0.02 2.66 16 29 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.06 2.10 7.87 -2.39 -0.02 2.08 16 Total: -1.00 -60.20 266.57 3.00 -57.20 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.99 Total: 7.19 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 2.98 Total: -19.02 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -5.07 Total: -78.14 kcal Atomic # 9 Polarization: -13.59 SS G_CDS: 2.24 Total: -11.35 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.86 Total: 44.13 kcal Total: -60.20 3.00 -57.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208887946.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.767 kcal (2) G-P(sol) polarization free energy of solvation -60.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds