Wall clock time and date at job start Sun Mar 29 2020 21:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47076 * 274.98708 * 3 2 1 5 5 H 1.48498 * 109.46809 * 34.98425 * 3 2 1 6 6 H 1.48499 * 109.47087 * 154.98333 * 3 2 1 7 7 C 1.38813 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00677 * 187.03461 * 7 2 1 9 9 N 1.36939 * 119.99732 * 7.02877 * 7 2 1 10 10 C 1.47020 * 125.65087 * 354.35924 * 9 7 2 11 11 C 1.54322 * 107.27467 * 179.20508 * 10 9 7 12 12 C 1.55164 * 102.93965 * 337.80777 * 11 10 9 13 13 H 1.09002 * 111.03702 * 277.41305 * 12 11 10 14 14 O 1.42897 * 111.00383 * 153.57711 * 12 11 10 15 15 C 1.42897 * 114.00147 * 156.35082 * 14 12 11 16 16 C 1.50707 * 109.47330 * 179.97438 * 15 14 12 17 17 C 1.34517 * 125.78567 * 89.99972 * 16 15 14 18 18 C 1.41384 * 106.83882 * 180.02562 * 17 16 15 19 19 C 1.34520 * 106.83784 * 359.97438 * 18 17 16 20 20 O 1.34297 * 125.79051 * 269.69154 * 16 15 14 21 21 C 1.47429 * 125.64625 * 174.66899 * 9 7 2 22 22 H 0.96992 * 120.00186 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.88144 * 298.62412 * 10 9 7 24 24 H 1.09003 * 109.87966 * 59.78894 * 10 9 7 25 25 H 1.08996 * 110.72497 * 219.44713 * 11 10 9 26 26 H 1.08999 * 110.72145 * 96.16350 * 11 10 9 27 27 H 1.09006 * 109.47085 * 299.99614 * 15 14 12 28 28 H 1.09001 * 109.47538 * 59.99625 * 15 14 12 29 29 H 1.08001 * 126.58170 * 0.03069 * 17 16 15 30 30 H 1.07997 * 126.58230 * 179.97438 * 18 17 16 31 31 H 1.07997 * 125.78588 * 180.02562 * 19 18 17 32 32 H 1.09002 * 110.36346 * 322.70225 * 21 9 7 33 33 H 1.08999 * 110.37028 * 84.91483 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2057 0.1151 9 7 1.3333 -2.3837 -0.1441 10 6 -0.1285 -2.5335 -0.1910 11 6 -0.4293 -4.0348 -0.3837 12 6 0.8870 -4.5764 -1.0013 13 1 0.9150 -4.4026 -2.0770 14 8 1.0590 -5.9637 -0.7048 15 6 1.9030 -6.6550 -1.6278 16 6 2.0138 -8.1018 -1.2206 17 6 1.2028 -9.0966 -1.6231 18 6 1.6663 -10.2794 -1.0026 19 6 2.7332 -9.9367 -0.2585 20 8 2.9426 -8.6175 -0.3990 21 6 1.9495 -3.7169 -0.2720 22 1 -0.4850 0.8400 -0.0004 23 1 -0.5671 -2.1845 0.7439 24 1 -0.5328 -1.9641 -1.0279 25 1 -1.2640 -4.1759 -1.0702 26 1 -0.6313 -4.5137 0.5744 27 1 1.4763 -6.5906 -2.6288 28 1 2.8936 -6.2003 -1.6252 29 1 0.3594 -9.0086 -2.2920 30 1 1.2447 -11.2683 -1.1062 31 1 3.3242 -10.6091 0.3456 32 1 2.8620 -3.6576 -0.8654 33 1 2.1645 -4.1316 0.7128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223053994.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:11 Heat of formation + Delta-G solvation = 1.255166 kcal Electronic energy + Delta-G solvation = -16392.365436 eV Core-core repulsion = 13614.102901 eV Total energy + Delta-G solvation = -2778.262535 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.57947 -38.38959 -35.97759 -33.08198 -32.28979 -30.73728 -29.12096 -27.13358 -25.72576 -24.20534 -21.80741 -20.65407 -20.32538 -20.03589 -17.56881 -17.02940 -16.61239 -15.73651 -15.09052 -14.93731 -14.61169 -13.92579 -13.53806 -13.00176 -12.87614 -12.65321 -12.40942 -12.22948 -11.85630 -11.42001 -10.97965 -10.92829 -10.74058 -10.23787 -10.08978 -9.98764 -9.82437 -9.71786 -9.15895 -8.60618 -8.57382 -6.83469 -5.72435 -3.05354 1.59785 2.50973 2.90625 3.40840 3.45939 3.48191 4.07635 4.51567 4.74151 4.94754 4.96322 5.24061 5.29315 5.42307 5.49100 5.55872 5.71481 5.75027 5.82092 5.86830 6.01048 6.25646 6.41703 6.46439 6.53423 6.66904 6.71123 7.09110 7.53056 7.55303 7.62184 7.82337 8.25268 9.21250 9.81527 10.47640 11.39752 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.060820 B = 0.004527 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.262522 B = 6183.492252 C = 6481.201981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.177 3.823 11 C -0.136 4.136 12 C 0.072 3.928 13 H 0.070 0.930 14 O -0.374 6.374 15 C 0.140 3.860 16 C -0.006 4.006 17 C -0.193 4.193 18 C -0.219 4.219 19 C -0.038 4.038 20 O -0.170 6.170 21 C 0.117 3.883 22 H 0.253 0.747 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.202 0.798 32 H 0.038 0.962 33 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 -17.232 -3.869 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.175 4.175 12 C 0.014 3.986 13 H 0.088 0.912 14 O -0.293 6.293 15 C 0.064 3.936 16 C -0.056 4.056 17 C -0.213 4.213 18 C -0.238 4.238 19 C -0.106 4.106 20 O -0.066 6.066 21 C -0.010 4.010 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.167 0.833 30 H 0.166 0.834 31 H 0.219 0.781 32 H 0.057 0.943 33 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.465 -16.914 -3.558 17.459 hybrid contribution 0.393 0.706 -0.201 0.833 sum 2.859 -16.208 -3.759 16.882 Atomic orbital electron populations 1.69966 1.04940 1.25115 1.56745 1.24830 0.95715 0.97682 1.02080 0.86098 0.78699 0.83498 0.77494 1.21590 1.21726 1.20602 1.19079 0.91184 0.82416 1.43148 0.90349 1.44363 1.01720 1.00796 1.86311 1.21198 0.84519 0.87848 1.01197 1.22982 0.94950 0.99085 1.00434 1.23486 0.97838 0.78689 0.98617 0.91200 1.87970 1.67729 1.22252 1.51314 1.20637 0.96185 0.84247 0.92566 1.22137 0.91645 0.95589 0.96243 1.21637 1.02116 0.92132 1.05391 1.21837 0.99521 0.99978 1.02484 1.24061 1.00723 0.82272 1.03591 1.84041 1.46807 1.22418 1.53326 1.21950 0.94581 0.87094 0.97371 0.93695 0.93729 0.93070 0.91704 0.91433 0.90193 0.91481 0.83326 0.83444 0.78118 0.94327 0.95445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.22 10.36 55.49 0.57 -26.64 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 22.20 29.56 -169.99 -5.02 17.18 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.54 10.26 -15.06 -0.15 -6.69 16 8 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 9 N -0.60 -15.91 3.39 -170.07 -0.58 -16.48 16 10 C 0.18 4.39 5.38 -3.07 -0.02 4.38 16 11 C -0.14 -2.69 6.69 -24.89 -0.17 -2.85 16 12 C 0.07 1.34 3.49 -24.58 -0.09 1.25 16 13 H 0.07 1.21 7.90 -51.93 -0.41 0.80 16 14 O -0.37 -6.50 10.14 -35.23 -0.36 -6.86 16 15 C 0.14 1.95 6.35 36.01 0.23 2.18 16 16 C -0.01 -0.08 6.95 -35.62 -0.25 -0.33 16 17 C -0.19 -2.37 10.81 -39.70 -0.43 -2.80 16 18 C -0.22 -2.34 10.91 -39.70 -0.43 -2.77 16 19 C -0.04 -0.41 12.09 29.42 0.36 -0.05 16 20 O -0.17 -2.38 10.65 5.73 0.06 -2.32 16 21 C 0.12 2.55 6.97 -2.53 -0.02 2.53 16 22 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.04 1.22 7.62 -51.93 -0.40 0.82 16 24 H 0.05 1.37 7.29 -51.93 -0.38 0.99 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.20 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 282.75 15.07 4.26 4.26 Total: -1.00 -32.09 282.75 -6.66 -38.75 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -4.53 Total: -2.43 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.06 Total: -5.45 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.00 Total: -43.13 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.30 Total: -9.18 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.09 -6.66 -38.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223053994.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.004 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds