Wall clock time and date at job start Sun Mar 29 2020 21:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47076 * 274.98708 * 3 2 1 5 5 H 1.48498 * 109.46809 * 34.98425 * 3 2 1 6 6 H 1.48499 * 109.47087 * 154.98333 * 3 2 1 7 7 C 1.38813 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00677 * 187.03461 * 7 2 1 9 9 N 1.36939 * 119.99732 * 7.02877 * 7 2 1 10 10 C 1.47020 * 125.65087 * 354.35924 * 9 7 2 11 11 C 1.54322 * 107.27467 * 179.20508 * 10 9 7 12 12 C 1.55164 * 102.93965 * 337.80777 * 11 10 9 13 13 H 1.09002 * 111.03702 * 277.41305 * 12 11 10 14 14 O 1.42897 * 111.00383 * 153.57711 * 12 11 10 15 15 C 1.42897 * 114.00147 * 156.35082 * 14 12 11 16 16 C 1.50707 * 109.47330 * 179.97438 * 15 14 12 17 17 C 1.34517 * 125.78567 * 89.99972 * 16 15 14 18 18 C 1.41384 * 106.83882 * 180.02562 * 17 16 15 19 19 C 1.34520 * 106.83784 * 359.97438 * 18 17 16 20 20 O 1.34297 * 125.79051 * 269.69154 * 16 15 14 21 21 C 1.47429 * 125.64625 * 174.66899 * 9 7 2 22 22 H 0.96992 * 120.00186 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.88144 * 298.62412 * 10 9 7 24 24 H 1.09003 * 109.87966 * 59.78894 * 10 9 7 25 25 H 1.08996 * 110.72497 * 219.44713 * 11 10 9 26 26 H 1.08999 * 110.72145 * 96.16350 * 11 10 9 27 27 H 1.09006 * 109.47085 * 299.99614 * 15 14 12 28 28 H 1.09001 * 109.47538 * 59.99625 * 15 14 12 29 29 H 1.08001 * 126.58170 * 0.03069 * 17 16 15 30 30 H 1.07997 * 126.58230 * 179.97438 * 18 17 16 31 31 H 1.07997 * 125.78588 * 180.02562 * 19 18 17 32 32 H 1.09002 * 110.36346 * 322.70225 * 21 9 7 33 33 H 1.08999 * 110.37028 * 84.91483 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2057 0.1151 9 7 1.3333 -2.3837 -0.1441 10 6 -0.1285 -2.5335 -0.1910 11 6 -0.4293 -4.0348 -0.3837 12 6 0.8870 -4.5764 -1.0013 13 1 0.9150 -4.4026 -2.0770 14 8 1.0590 -5.9637 -0.7048 15 6 1.9030 -6.6550 -1.6278 16 6 2.0138 -8.1018 -1.2206 17 6 1.2028 -9.0966 -1.6231 18 6 1.6663 -10.2794 -1.0026 19 6 2.7332 -9.9367 -0.2585 20 8 2.9426 -8.6175 -0.3990 21 6 1.9495 -3.7169 -0.2720 22 1 -0.4850 0.8400 -0.0004 23 1 -0.5671 -2.1845 0.7439 24 1 -0.5328 -1.9641 -1.0279 25 1 -1.2640 -4.1759 -1.0702 26 1 -0.6313 -4.5137 0.5744 27 1 1.4763 -6.5906 -2.6288 28 1 2.8936 -6.2003 -1.6252 29 1 0.3594 -9.0086 -2.2920 30 1 1.2447 -11.2683 -1.1062 31 1 3.3242 -10.6091 0.3456 32 1 2.8620 -3.6576 -0.8654 33 1 2.1645 -4.1316 0.7128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223053994.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:10 Heat of formation + Delta-G solvation = -19.307294 kcal Electronic energy + Delta-G solvation = -16393.257091 eV Core-core repulsion = 13614.102901 eV Total energy + Delta-G solvation = -2779.154190 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.47484 -39.91696 -37.62731 -34.32766 -33.90864 -31.91552 -30.91433 -28.86637 -26.94787 -26.04304 -22.68434 -22.09555 -21.92447 -21.44164 -19.01349 -18.50500 -17.93297 -16.87889 -16.65943 -16.33179 -16.11207 -15.56492 -15.11997 -14.35809 -14.11388 -13.90415 -13.73432 -13.63712 -13.46890 -12.95301 -12.85653 -12.62169 -12.29154 -12.06118 -12.01562 -11.81234 -11.47645 -10.85948 -10.70852 -10.57323 -9.50037 -8.94115 -7.88133 -5.24234 0.67103 1.46712 1.48743 1.57889 1.65854 2.03870 2.47740 2.86415 3.31050 3.71285 3.78189 3.84291 4.05058 4.13589 4.15931 4.16841 4.34889 4.39364 4.60869 4.73364 4.90260 4.94000 5.00235 5.02127 5.04443 5.17336 5.42815 5.60875 5.61295 5.71236 6.11824 6.20754 6.24139 7.06986 7.72712 8.37765 9.22886 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.060820 B = 0.004527 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.262522 B = 6183.492252 C = 6481.201981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.062 4.062 3 Si 0.982 3.018 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.250 4.250 8 H 0.082 0.918 9 N -0.626 5.626 10 C 0.184 3.816 11 C -0.124 4.124 12 C 0.092 3.908 13 H 0.089 0.911 14 O -0.385 6.385 15 C 0.136 3.864 16 C -0.043 4.043 17 C -0.192 4.192 18 C -0.229 4.229 19 C -0.036 4.036 20 O -0.196 6.196 21 C 0.112 3.888 22 H 0.249 0.751 23 H 0.008 0.992 24 H 0.025 0.975 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.164 0.836 30 H 0.175 0.825 31 H 0.239 0.761 32 H 0.048 0.952 33 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.975 -18.844 -4.618 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.809 3.191 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.379 4.379 8 H 0.100 0.900 9 N -0.353 5.353 10 C 0.059 3.941 11 C -0.162 4.162 12 C 0.034 3.966 13 H 0.107 0.893 14 O -0.304 6.304 15 C 0.060 3.940 16 C -0.092 4.092 17 C -0.211 4.211 18 C -0.248 4.248 19 C -0.104 4.104 20 O -0.093 6.093 21 C -0.014 4.014 22 H 0.058 0.942 23 H 0.026 0.974 24 H 0.043 0.957 25 H 0.112 0.888 26 H 0.087 0.913 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.182 0.818 30 H 0.193 0.807 31 H 0.255 0.745 32 H 0.067 0.933 33 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.080 -18.564 -4.314 19.306 hybrid contribution 0.245 1.072 0.073 1.102 sum 3.325 -17.493 -4.241 18.304 Atomic orbital electron populations 1.70177 1.06369 1.25553 1.57628 1.25699 0.96642 1.01076 1.02085 0.85022 0.77746 0.78861 0.77455 1.21021 1.22008 1.19337 1.19472 0.91694 0.83704 1.43016 0.90012 1.44669 1.02569 1.01883 1.86221 1.20960 0.83828 0.91068 0.98216 1.22812 0.96689 0.95225 1.01492 1.23142 0.95359 0.79213 0.98920 0.89286 1.87945 1.68516 1.21117 1.52846 1.20864 0.95828 0.84256 0.93058 1.22218 0.93049 0.95840 0.98112 1.22003 1.01833 0.92390 1.04870 1.22237 0.99589 1.00768 1.02190 1.24925 1.00873 0.81426 1.03127 1.84021 1.47379 1.24053 1.53822 1.22095 0.96008 0.85818 0.97466 0.94153 0.97423 0.95652 0.88845 0.91342 0.87564 0.91442 0.81839 0.80748 0.74465 0.93336 0.96515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.54 10.36 21.65 0.22 -57.32 16 2 C -0.06 -3.56 5.48 84.86 0.46 -3.09 16 3 Si 0.98 46.00 29.56 68.60 2.03 48.03 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.25 -14.40 10.26 84.03 0.86 -13.53 16 8 H 0.08 4.50 7.84 -2.91 -0.02 4.48 16 9 N -0.63 -33.43 3.39 -691.98 -2.35 -35.78 16 10 C 0.18 9.36 5.38 86.73 0.47 9.83 16 11 C -0.12 -4.79 6.69 31.78 0.21 -4.58 16 12 C 0.09 3.30 3.49 31.99 0.11 3.41 16 13 H 0.09 2.88 7.90 -2.39 -0.02 2.86 16 14 O -0.39 -12.78 10.14 -148.98 -1.51 -14.29 16 15 C 0.14 3.54 6.35 71.24 0.45 3.99 16 16 C -0.04 -1.13 6.95 24.84 0.17 -0.95 16 17 C -0.19 -4.28 10.81 22.19 0.24 -4.04 16 18 C -0.23 -4.26 10.91 22.19 0.24 -4.01 16 19 C -0.04 -0.68 12.09 66.97 0.81 0.13 16 20 O -0.20 -5.23 10.65 -2.40 -0.03 -5.25 16 21 C 0.11 4.87 6.97 86.85 0.61 5.47 16 22 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 23 H 0.01 0.43 7.62 -2.39 -0.02 0.41 16 24 H 0.03 1.40 7.29 -2.39 -0.02 1.38 16 25 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 26 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.11 2.17 8.11 -2.38 -0.02 2.15 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 31 H 0.24 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -70.16 282.75 4.09 -66.06 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.09 Total: 5.92 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 4.64 Total: -7.38 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -2.12 Total: -93.10 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -1.54 Total: -19.54 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -70.16 4.09 -66.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223053994.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.756 kcal (2) G-P(sol) polarization free energy of solvation -70.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds