Wall clock time and date at job start Sun Mar 29 2020 21:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00120 * 2 1 4 4 H 1.48499 * 109.46996 * 239.99973 * 3 2 1 5 5 H 1.48497 * 109.46870 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46914 * 119.99765 * 3 2 1 7 7 C 1.38807 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00210 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00165 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.64445 * 0.03628 * 9 7 2 11 11 C 1.54331 * 107.26882 * 181.02844 * 10 9 7 12 12 C 1.55162 * 102.94225 * 22.19245 * 11 10 9 13 13 H 1.09000 * 111.03444 * 82.58292 * 12 11 10 14 14 O 1.42899 * 111.00246 * 206.42449 * 12 11 10 15 15 C 1.42903 * 113.99629 * 203.65150 * 14 12 11 16 16 C 1.50701 * 109.46878 * 179.97438 * 15 14 12 17 17 C 1.34518 * 125.78686 * 90.00241 * 16 15 14 18 18 C 1.41377 * 106.84005 * 180.02562 * 17 16 15 19 19 C 1.34516 * 106.84066 * 359.97438 * 18 17 16 20 20 O 1.34297 * 125.79120 * 269.69564 * 16 15 14 21 21 C 1.47418 * 125.65054 * 180.02562 * 9 7 2 22 22 H 0.97005 * 120.00082 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.88199 * 300.44424 * 10 9 7 24 24 H 1.08997 * 109.88327 * 61.46052 * 10 9 7 25 25 H 1.08999 * 110.71700 * 263.82899 * 11 10 9 26 26 H 1.09004 * 110.71895 * 140.55391 * 11 10 9 27 27 H 1.09002 * 109.47382 * 59.99956 * 15 14 12 28 28 H 1.09001 * 109.46938 * 299.99942 * 15 14 12 29 29 H 1.08002 * 126.57866 * 359.95601 * 17 16 15 30 30 H 1.08001 * 126.58576 * 179.97438 * 18 17 16 31 31 H 1.08005 * 125.79342 * 180.02562 * 19 18 17 32 32 H 1.09000 * 110.36954 * 37.06062 * 21 9 7 33 33 H 1.09009 * 110.36393 * 274.73831 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1376 -2.5327 -0.0030 11 6 -0.4486 -4.0441 0.0226 12 6 0.8513 -4.6565 0.6081 13 1 0.8557 -4.5978 1.6965 14 8 1.0244 -6.0056 0.1699 15 6 1.8446 -6.7962 1.0327 16 6 1.9578 -8.1926 0.4775 17 6 2.9004 -8.6243 -0.3797 18 6 2.6289 -9.9882 -0.6341 19 6 1.5370 -10.3086 0.0832 20 8 1.1383 -9.2186 0.7590 21 6 1.9333 -3.7311 -0.0017 22 1 -0.4850 0.8401 0.0004 23 1 -0.5585 -2.0526 0.8805 24 1 -0.5539 -2.0815 -0.9037 25 1 -0.6309 -4.4174 -0.9851 26 1 -1.2992 -4.2519 0.6718 27 1 1.3957 -6.8355 2.0253 28 1 2.8368 -6.3500 1.1001 29 1 3.7087 -8.0406 -0.7948 30 1 3.1903 -10.6466 -1.2804 31 1 1.0639 -11.2790 0.1142 32 1 2.8322 -3.7408 0.6148 33 1 2.1674 -4.0415 -1.0202 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223053996.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:13 Heat of formation + Delta-G solvation = 1.364759 kcal Electronic energy + Delta-G solvation = -16390.093488 eV Core-core repulsion = 13611.835705 eV Total energy + Delta-G solvation = -2778.257783 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.57821 -38.39048 -35.97658 -33.07728 -32.28887 -30.73365 -29.11460 -27.14061 -25.71754 -24.20695 -21.80252 -20.64623 -20.32841 -20.02864 -17.57876 -17.02713 -16.61911 -15.75268 -15.17682 -14.74488 -14.55456 -14.11571 -13.43188 -13.13923 -12.87255 -12.72105 -12.30843 -12.03163 -11.80782 -11.61793 -10.96545 -10.92133 -10.71058 -10.23588 -10.12517 -9.98105 -9.80743 -9.71481 -9.16323 -8.60389 -8.59157 -6.84028 -5.70962 -3.05261 1.59658 2.52193 2.90092 3.41358 3.45259 3.46823 4.07801 4.51675 4.74101 4.95631 4.96758 5.25694 5.30412 5.42892 5.47628 5.57831 5.73143 5.75407 5.82064 5.88804 6.01259 6.26173 6.42696 6.45277 6.53860 6.66713 6.70005 7.08777 7.53174 7.55322 7.61811 7.82386 8.25541 9.21465 9.81621 10.47233 11.40682 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.062194 B = 0.004502 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.096193 B = 6217.594375 C = 6514.305365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.137 4.137 12 C 0.071 3.929 13 H 0.070 0.930 14 O -0.374 6.374 15 C 0.141 3.859 16 C -0.008 4.008 17 C -0.191 4.191 18 C -0.218 4.218 19 C -0.040 4.040 20 O -0.172 6.172 21 C 0.117 3.883 22 H 0.253 0.747 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.202 0.798 32 H 0.038 0.962 33 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.915 -17.267 1.692 17.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.175 4.175 12 C 0.013 3.987 13 H 0.088 0.912 14 O -0.293 6.293 15 C 0.065 3.935 16 C -0.058 4.058 17 C -0.210 4.210 18 C -0.237 4.237 19 C -0.108 4.108 20 O -0.068 6.068 21 C -0.009 4.009 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.168 0.832 30 H 0.166 0.834 31 H 0.219 0.781 32 H 0.056 0.944 33 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.521 -17.073 1.723 17.344 hybrid contribution 0.735 0.794 -0.028 1.082 sum 3.256 -16.279 1.695 16.688 Atomic orbital electron populations 1.69946 1.04904 1.25221 1.56923 1.24812 0.95740 0.97691 1.02138 0.86172 0.78435 0.83076 0.77906 1.21132 1.21557 1.21153 1.19023 0.90446 0.82293 1.44089 0.90420 1.44347 1.01749 0.99685 1.87403 1.21187 0.84377 0.87621 1.01483 1.22986 0.95110 0.98702 1.00697 1.23498 0.97846 0.79529 0.97818 0.91242 1.87971 1.69491 1.22666 1.49128 1.20633 0.96660 0.83260 0.92993 1.22134 0.92261 0.89400 1.01997 1.21674 1.02427 0.95695 1.01208 1.21849 1.00103 0.96654 1.05068 1.24044 0.98459 0.91091 0.97215 1.84020 1.48286 1.18026 1.56503 1.21941 0.94474 0.86662 0.97869 0.93639 0.93288 0.93468 0.91419 0.91722 0.91755 0.89966 0.83199 0.83420 0.78132 0.94382 0.95388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 10.31 55.49 0.57 -26.69 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.23 -6.51 10.28 -15.06 -0.15 -6.66 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.82 3.39 -170.08 -0.58 -16.40 16 10 C 0.18 4.42 5.38 -3.06 -0.02 4.40 16 11 C -0.14 -2.72 6.69 -24.89 -0.17 -2.88 16 12 C 0.07 1.33 3.49 -24.59 -0.09 1.24 16 13 H 0.07 1.22 7.90 -51.93 -0.41 0.81 16 14 O -0.37 -6.51 10.14 -35.23 -0.36 -6.87 16 15 C 0.14 1.96 6.35 36.01 0.23 2.19 16 16 C -0.01 -0.11 6.95 -35.62 -0.25 -0.36 16 17 C -0.19 -2.42 10.81 -39.70 -0.43 -2.85 16 18 C -0.22 -2.36 10.91 -39.70 -0.43 -2.79 16 19 C -0.04 -0.42 12.09 29.42 0.36 -0.06 16 20 O -0.17 -2.34 10.65 5.72 0.06 -2.28 16 21 C 0.12 2.52 6.97 -2.54 -0.02 2.51 16 22 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.05 1.32 7.38 -51.93 -0.38 0.93 16 24 H 0.05 1.29 7.50 -51.93 -0.39 0.90 16 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.20 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 282.67 15.07 4.26 4.26 Total: -1.00 -31.92 282.67 -6.66 -38.58 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.53 Total: -2.16 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -1.06 Total: -5.57 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.01 Total: -43.09 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.30 Total: -9.16 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.92 -6.66 -38.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223053996.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.947 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds