Wall clock time and date at job start Sun Mar 29 2020 21:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00120 * 2 1 4 4 H 1.48499 * 109.46996 * 239.99973 * 3 2 1 5 5 H 1.48497 * 109.46870 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46914 * 119.99765 * 3 2 1 7 7 C 1.38807 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00210 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00165 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.64445 * 0.03628 * 9 7 2 11 11 C 1.54331 * 107.26882 * 181.02844 * 10 9 7 12 12 C 1.55162 * 102.94225 * 22.19245 * 11 10 9 13 13 H 1.09000 * 111.03444 * 82.58292 * 12 11 10 14 14 O 1.42899 * 111.00246 * 206.42449 * 12 11 10 15 15 C 1.42903 * 113.99629 * 203.65150 * 14 12 11 16 16 C 1.50701 * 109.46878 * 179.97438 * 15 14 12 17 17 C 1.34518 * 125.78686 * 90.00241 * 16 15 14 18 18 C 1.41377 * 106.84005 * 180.02562 * 17 16 15 19 19 C 1.34516 * 106.84066 * 359.97438 * 18 17 16 20 20 O 1.34297 * 125.79120 * 269.69564 * 16 15 14 21 21 C 1.47418 * 125.65054 * 180.02562 * 9 7 2 22 22 H 0.97005 * 120.00082 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.88199 * 300.44424 * 10 9 7 24 24 H 1.08997 * 109.88327 * 61.46052 * 10 9 7 25 25 H 1.08999 * 110.71700 * 263.82899 * 11 10 9 26 26 H 1.09004 * 110.71895 * 140.55391 * 11 10 9 27 27 H 1.09002 * 109.47382 * 59.99956 * 15 14 12 28 28 H 1.09001 * 109.46938 * 299.99942 * 15 14 12 29 29 H 1.08002 * 126.57866 * 359.95601 * 17 16 15 30 30 H 1.08001 * 126.58576 * 179.97438 * 18 17 16 31 31 H 1.08005 * 125.79342 * 180.02562 * 19 18 17 32 32 H 1.09000 * 110.36954 * 37.06062 * 21 9 7 33 33 H 1.09009 * 110.36393 * 274.73831 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1376 -2.5327 -0.0030 11 6 -0.4486 -4.0441 0.0226 12 6 0.8513 -4.6565 0.6081 13 1 0.8557 -4.5978 1.6965 14 8 1.0244 -6.0056 0.1699 15 6 1.8446 -6.7962 1.0327 16 6 1.9578 -8.1926 0.4775 17 6 2.9004 -8.6243 -0.3797 18 6 2.6289 -9.9882 -0.6341 19 6 1.5370 -10.3086 0.0832 20 8 1.1383 -9.2186 0.7590 21 6 1.9333 -3.7311 -0.0017 22 1 -0.4850 0.8401 0.0004 23 1 -0.5585 -2.0526 0.8805 24 1 -0.5539 -2.0815 -0.9037 25 1 -0.6309 -4.4174 -0.9851 26 1 -1.2992 -4.2519 0.6718 27 1 1.3957 -6.8355 2.0253 28 1 2.8368 -6.3500 1.1001 29 1 3.7087 -8.0406 -0.7948 30 1 3.1903 -10.6466 -1.2804 31 1 1.0639 -11.2790 0.1142 32 1 2.8322 -3.7408 0.6148 33 1 2.1674 -4.0415 -1.0202 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223053996.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:12 Heat of formation + Delta-G solvation = -18.963208 kcal Electronic energy + Delta-G solvation = -16390.974974 eV Core-core repulsion = 13611.835705 eV Total energy + Delta-G solvation = -2779.139270 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.47620 -39.91773 -37.62416 -34.31576 -33.91252 -31.91535 -30.90832 -28.86331 -26.94012 -26.04337 -22.69245 -22.08217 -21.92501 -21.44173 -19.00226 -18.53189 -17.92292 -16.88156 -16.64439 -16.39487 -15.87848 -15.70261 -15.04271 -14.62934 -14.02632 -13.87464 -13.75042 -13.57034 -13.24987 -13.09462 -12.83322 -12.69368 -12.27202 -12.07352 -12.04197 -11.76301 -11.48018 -10.87051 -10.71504 -10.57084 -9.50328 -8.93422 -7.85668 -5.22947 0.66551 1.47183 1.50933 1.57242 1.65073 2.02191 2.48638 2.86410 3.33263 3.68975 3.77787 3.89364 4.03001 4.12659 4.14888 4.16787 4.34744 4.39923 4.60888 4.74372 4.90079 4.93534 5.00522 5.02325 5.05283 5.16872 5.43370 5.59530 5.61318 5.71800 6.12379 6.19419 6.24130 7.07880 7.74082 8.38624 9.24682 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.062194 B = 0.004502 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.096193 B = 6217.594375 C = 6514.305365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.983 3.017 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.249 4.249 8 H 0.085 0.915 9 N -0.626 5.626 10 C 0.186 3.814 11 C -0.126 4.126 12 C 0.091 3.909 13 H 0.085 0.915 14 O -0.385 6.385 15 C 0.137 3.863 16 C -0.040 4.040 17 C -0.197 4.197 18 C -0.231 4.231 19 C -0.033 4.033 20 O -0.191 6.191 21 C 0.114 3.886 22 H 0.248 0.752 23 H 0.021 0.979 24 H 0.010 0.990 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.157 0.843 30 H 0.173 0.827 31 H 0.242 0.758 32 H 0.052 0.948 33 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.850 -18.916 2.012 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.810 3.190 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.377 4.377 8 H 0.103 0.897 9 N -0.354 5.354 10 C 0.061 3.939 11 C -0.164 4.164 12 C 0.032 3.968 13 H 0.103 0.897 14 O -0.304 6.304 15 C 0.061 3.939 16 C -0.090 4.090 17 C -0.216 4.216 18 C -0.249 4.249 19 C -0.100 4.100 20 O -0.088 6.088 21 C -0.012 4.012 22 H 0.058 0.942 23 H 0.040 0.960 24 H 0.029 0.971 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.175 0.825 30 H 0.191 0.809 31 H 0.258 0.742 32 H 0.070 0.930 33 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.483 -18.761 2.044 19.190 hybrid contribution 0.485 1.169 -0.172 1.277 sum 3.968 -17.592 1.873 18.131 Atomic orbital electron populations 1.70171 1.06376 1.25544 1.57938 1.25700 0.96662 1.01147 1.02247 0.85095 0.77113 0.78454 0.78304 1.20358 1.21955 1.19985 1.19458 0.91126 0.83514 1.43634 0.89749 1.44653 1.02492 1.00943 1.87290 1.20927 0.83880 0.90715 0.98383 1.22818 0.96851 0.95045 1.01672 1.23150 0.95472 0.79940 0.98189 0.89668 1.87945 1.70346 1.21791 1.50334 1.20831 0.96884 0.83150 0.93050 1.22163 0.93452 0.89637 1.03742 1.21999 1.02204 0.96885 1.00504 1.22222 1.00713 0.96231 1.05775 1.24933 0.98025 0.91541 0.95471 1.84006 1.48734 1.18759 1.57310 1.22089 0.95847 0.85251 0.98021 0.94244 0.96041 0.97131 0.91260 0.89248 0.90368 0.88636 0.82514 0.80921 0.74151 0.93018 0.96005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.76 10.31 21.65 0.22 -57.53 16 2 C -0.06 -3.70 5.49 84.86 0.47 -3.24 16 3 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.25 -14.16 10.28 84.03 0.86 -13.29 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 9 N -0.63 -33.13 3.39 -692.01 -2.35 -35.48 16 10 C 0.19 9.47 5.38 86.73 0.47 9.93 16 11 C -0.13 -4.92 6.69 31.79 0.21 -4.70 16 12 C 0.09 3.26 3.49 31.98 0.11 3.38 16 13 H 0.09 2.82 7.90 -2.39 -0.02 2.80 16 14 O -0.38 -12.79 10.14 -148.98 -1.51 -14.30 16 15 C 0.14 3.57 6.35 71.24 0.45 4.02 16 16 C -0.04 -1.07 6.95 24.83 0.17 -0.89 16 17 C -0.20 -4.66 10.81 22.19 0.24 -4.42 16 18 C -0.23 -4.41 10.91 22.19 0.24 -4.16 16 19 C -0.03 -0.59 12.09 66.97 0.81 0.22 16 20 O -0.19 -4.85 10.65 -2.43 -0.03 -4.87 16 21 C 0.11 4.81 6.97 86.85 0.61 5.42 16 22 H 0.25 14.64 8.31 -92.70 -0.77 13.86 16 23 H 0.02 1.19 7.38 -2.39 -0.02 1.17 16 24 H 0.01 0.60 7.50 -2.39 -0.02 0.58 16 25 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 27 H 0.08 1.80 8.11 -2.39 -0.02 1.78 16 28 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.24 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -69.44 282.67 4.09 -65.35 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.09 Total: 6.71 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 4.64 Total: -7.75 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -2.13 Total: -93.01 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -1.54 Total: -19.17 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -69.44 4.09 -65.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223053996.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.387 kcal (2) G-P(sol) polarization free energy of solvation -69.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds