Wall clock time and date at job start Sun Mar 29 2020 22:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99816 * 2 1 4 4 H 1.48494 * 109.46849 * 269.99521 * 3 2 1 5 5 H 1.48503 * 109.46862 * 149.99598 * 3 2 1 6 6 H 1.48496 * 109.47029 * 29.99836 * 3 2 1 7 7 C 1.38803 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00149 * 207.27111 * 7 2 1 9 9 N 1.36933 * 120.00505 * 27.27804 * 7 2 1 10 10 C 1.47429 * 125.64543 * 13.31838 * 9 7 2 11 11 C 1.55122 * 104.72375 * 155.81854 * 10 9 7 12 12 C 1.55159 * 101.48671 * 37.29269 * 11 10 9 13 13 H 1.08997 * 110.87267 * 82.77173 * 12 11 10 14 14 O 1.42902 * 110.71995 * 205.96881 * 12 11 10 15 15 C 1.42900 * 113.99794 * 204.97655 * 14 12 11 16 16 C 1.50701 * 109.46828 * 179.97438 * 15 14 12 17 17 C 1.41386 * 126.57598 * 90.00393 * 16 15 14 18 18 C 1.34516 * 106.83883 * 179.97438 * 17 16 15 19 19 O 1.34305 * 108.42075 * 359.97438 * 18 17 16 20 20 C 1.34301 * 109.47741 * 359.76819 * 19 18 17 21 21 C 1.47019 * 125.65365 * 193.62301 * 9 7 2 22 22 H 0.96994 * 119.99479 * 185.84916 * 1 2 3 23 23 H 1.09001 * 110.36546 * 274.74550 * 10 9 7 24 24 H 1.08995 * 110.36676 * 37.06643 * 10 9 7 25 25 H 1.09002 * 111.19237 * 279.18719 * 11 10 9 26 26 H 1.09004 * 110.93886 * 155.28632 * 11 10 9 27 27 H 1.08999 * 109.47087 * 299.99636 * 15 14 12 28 28 H 1.09000 * 109.47156 * 60.00472 * 15 14 12 29 29 H 1.07992 * 126.58209 * 359.91960 * 17 16 15 30 30 H 1.08005 * 125.79265 * 179.97438 * 18 17 16 31 31 H 1.08003 * 125.78968 * 180.23435 * 20 19 18 32 32 H 1.09000 * 109.88468 * 300.43953 * 21 9 7 33 33 H 1.09004 * 109.88232 * 61.60256 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 3.5478 1.4402 0.7001 6 1 1.4476 2.6527 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0002 -1.2540 0.4291 9 7 1.4398 -2.3223 -0.5424 10 6 0.2379 -2.3469 -1.3959 11 6 0.3683 -3.6528 -2.2229 12 6 0.9848 -4.6200 -1.1779 13 1 0.2113 -5.0449 -0.5383 14 8 1.7287 -5.6549 -1.8241 15 6 1.8474 -6.8529 -1.0541 16 6 2.6457 -7.8703 -1.8278 17 6 4.0484 -8.0440 -1.7930 18 6 4.3365 -9.0572 -2.6296 19 8 3.1891 -9.5042 -3.1657 20 6 2.1599 -8.7916 -2.6790 21 6 1.9207 -3.7003 -0.3658 22 1 -0.4849 -0.8357 0.0856 23 1 -0.6626 -2.3720 -0.7823 24 1 0.2239 -1.4799 -2.0563 25 1 1.0381 -3.5164 -3.0719 26 1 -0.6095 -4.0047 -2.5519 27 1 2.3532 -6.6320 -0.1142 28 1 0.8543 -7.2518 -0.8473 29 1 4.7534 -7.4723 -1.2078 30 1 5.3231 -9.4455 -2.8353 31 1 1.1191 -8.9325 -2.9306 32 1 2.9412 -3.7876 -0.7387 33 1 1.8848 -3.9732 0.6890 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223783328.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:39 Heat of formation + Delta-G solvation = -3.018290 kcal Electronic energy + Delta-G solvation = -16410.048231 eV Core-core repulsion = 13631.600385 eV Total energy + Delta-G solvation = -2778.447846 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.63691 -38.51592 -36.22841 -33.52626 -32.20701 -30.00771 -29.13166 -27.33671 -26.01041 -24.11742 -21.69747 -20.66886 -20.30581 -20.12745 -17.70614 -17.51089 -16.64576 -15.92073 -15.21411 -14.87671 -14.48132 -14.02753 -13.70252 -13.28117 -13.03702 -12.89161 -12.53257 -12.21479 -11.73983 -11.47802 -11.07606 -10.73409 -10.58584 -10.44359 -10.07016 -10.00305 -9.81847 -9.52970 -9.18460 -8.69534 -8.40047 -6.93468 -6.07396 -3.10051 1.63594 2.40851 3.01455 3.53665 3.56581 3.72604 4.08727 4.62584 4.67591 4.82084 4.98592 5.19253 5.28401 5.33911 5.44648 5.50325 5.56528 5.64495 5.73437 5.94185 6.05323 6.09481 6.28712 6.35744 6.39902 6.55037 6.65198 6.97933 6.98480 7.05163 7.56691 7.80281 8.50191 9.04529 9.84210 10.38081 11.26101 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.052831 B = 0.004615 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.869625 B = 6066.279055 C = 6374.686611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.027 4.027 3 Si 1.069 2.931 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.335 4.335 8 H 0.067 0.933 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.129 4.129 12 C 0.076 3.924 13 H 0.065 0.935 14 O -0.372 6.372 15 C 0.130 3.870 16 C -0.178 4.178 17 C -0.194 4.194 18 C -0.050 4.050 19 O -0.179 6.179 20 C -0.022 4.022 21 C 0.117 3.883 22 H 0.269 0.731 23 H 0.027 0.973 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.149 0.851 30 H 0.202 0.798 31 H 0.203 0.797 32 H 0.035 0.965 33 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 -17.283 -4.254 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.228 4.228 3 Si 0.899 3.101 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.462 4.462 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.019 3.981 11 C -0.167 4.167 12 C 0.018 3.982 13 H 0.083 0.917 14 O -0.291 6.291 15 C 0.053 3.947 16 C -0.180 4.180 17 C -0.214 4.214 18 C -0.117 4.117 19 O -0.075 6.075 20 C -0.090 4.090 21 C -0.009 4.009 22 H 0.080 0.920 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.167 0.833 30 H 0.219 0.781 31 H 0.220 0.780 32 H 0.053 0.947 33 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 3.800 -15.766 -4.655 16.872 hybrid contribution 0.203 -1.550 0.606 1.676 sum 4.004 -17.316 -4.048 18.228 Atomic orbital electron populations 1.70762 1.06593 1.30245 1.48801 1.25737 0.96485 1.00926 0.99633 0.83459 0.74412 0.75733 0.76530 1.22048 1.21919 1.21618 1.19825 0.99383 0.87714 1.39292 0.91526 1.44467 1.31097 1.00981 1.56532 1.21607 0.90235 0.94317 0.91934 1.22962 0.99705 0.95917 0.98137 1.23205 0.92853 0.87310 0.94845 0.91718 1.87997 1.75151 1.22650 1.43317 1.20598 0.97229 0.83920 0.92958 1.20248 0.94328 0.99916 1.03493 1.21795 0.95609 1.00504 1.03451 1.23989 0.89484 0.99154 0.99040 1.84062 1.15138 1.51923 1.56332 1.23920 0.92556 0.94580 0.97971 1.21742 0.96689 0.86245 0.96220 0.91959 0.95500 0.92389 0.90682 0.91494 0.92352 0.92758 0.83305 0.78102 0.78016 0.94668 0.96106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.34 12.82 55.49 0.71 -27.62 16 2 C -0.03 -0.79 5.09 -17.43 -0.09 -0.88 16 3 Si 1.07 25.97 30.00 -169.99 -5.10 20.87 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.33 -9.80 10.05 -15.06 -0.15 -9.96 16 8 H 0.07 1.95 7.96 -52.48 -0.42 1.53 16 9 N -0.60 -16.06 3.33 -169.94 -0.57 -16.62 16 10 C 0.14 3.48 5.22 -2.41 -0.01 3.47 16 11 C -0.13 -2.49 6.82 -24.47 -0.17 -2.66 16 12 C 0.08 1.41 3.40 -24.90 -0.08 1.33 16 13 H 0.06 1.10 7.88 -51.93 -0.41 0.69 16 14 O -0.37 -6.49 10.05 -35.23 -0.35 -6.85 16 15 C 0.13 1.80 6.32 36.01 0.23 2.03 16 16 C -0.18 -2.32 5.79 -104.74 -0.61 -2.93 16 17 C -0.19 -2.34 10.87 -39.70 -0.43 -2.77 16 18 C -0.05 -0.50 12.09 29.42 0.36 -0.15 16 19 O -0.18 -2.04 10.65 5.71 0.06 -1.98 16 20 C -0.02 -0.25 12.01 29.42 0.35 0.10 16 21 C 0.12 2.63 7.01 -3.07 -0.02 2.60 16 22 H 0.27 8.22 5.83 -40.82 -0.24 7.98 16 23 H 0.03 0.67 6.84 -51.93 -0.36 0.32 16 24 H 0.06 1.52 7.73 -51.93 -0.40 1.12 16 25 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 29 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.20 1.24 8.06 -52.48 -0.42 0.81 16 31 H 0.20 1.62 8.06 -52.48 -0.42 1.20 16 32 H 0.04 0.81 8.06 -51.93 -0.42 0.40 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 281.99 15.07 4.25 4.25 Total: -1.00 -33.63 281.99 -6.04 -39.67 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -4.42 Total: -1.91 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -0.63 Total: -9.81 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.15 Total: -44.25 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.29 Total: -8.83 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.10 Total: 20.87 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.63 -6.04 -39.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223783328.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.656 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds