Wall clock time and date at job start Sun Mar 29 2020 22:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99816 * 2 1 4 4 H 1.48494 * 109.46849 * 269.99521 * 3 2 1 5 5 H 1.48503 * 109.46862 * 149.99598 * 3 2 1 6 6 H 1.48496 * 109.47029 * 29.99836 * 3 2 1 7 7 C 1.38803 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00149 * 207.27111 * 7 2 1 9 9 N 1.36933 * 120.00505 * 27.27804 * 7 2 1 10 10 C 1.47429 * 125.64543 * 13.31838 * 9 7 2 11 11 C 1.55122 * 104.72375 * 155.81854 * 10 9 7 12 12 C 1.55159 * 101.48671 * 37.29269 * 11 10 9 13 13 H 1.08997 * 110.87267 * 82.77173 * 12 11 10 14 14 O 1.42902 * 110.71995 * 205.96881 * 12 11 10 15 15 C 1.42900 * 113.99794 * 204.97655 * 14 12 11 16 16 C 1.50701 * 109.46828 * 179.97438 * 15 14 12 17 17 C 1.41386 * 126.57598 * 90.00393 * 16 15 14 18 18 C 1.34516 * 106.83883 * 179.97438 * 17 16 15 19 19 O 1.34305 * 108.42075 * 359.97438 * 18 17 16 20 20 C 1.34301 * 109.47741 * 359.76819 * 19 18 17 21 21 C 1.47019 * 125.65365 * 193.62301 * 9 7 2 22 22 H 0.96994 * 119.99479 * 185.84916 * 1 2 3 23 23 H 1.09001 * 110.36546 * 274.74550 * 10 9 7 24 24 H 1.08995 * 110.36676 * 37.06643 * 10 9 7 25 25 H 1.09002 * 111.19237 * 279.18719 * 11 10 9 26 26 H 1.09004 * 110.93886 * 155.28632 * 11 10 9 27 27 H 1.08999 * 109.47087 * 299.99636 * 15 14 12 28 28 H 1.09000 * 109.47156 * 60.00472 * 15 14 12 29 29 H 1.07992 * 126.58209 * 359.91960 * 17 16 15 30 30 H 1.08005 * 125.79265 * 179.97438 * 18 17 16 31 31 H 1.08003 * 125.78968 * 180.23435 * 20 19 18 32 32 H 1.09000 * 109.88468 * 300.43953 * 21 9 7 33 33 H 1.09004 * 109.88232 * 61.60256 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 3.5478 1.4402 0.7001 6 1 1.4476 2.6527 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0002 -1.2540 0.4291 9 7 1.4398 -2.3223 -0.5424 10 6 0.2379 -2.3469 -1.3959 11 6 0.3683 -3.6528 -2.2229 12 6 0.9848 -4.6200 -1.1779 13 1 0.2113 -5.0449 -0.5383 14 8 1.7287 -5.6549 -1.8241 15 6 1.8474 -6.8529 -1.0541 16 6 2.6457 -7.8703 -1.8278 17 6 4.0484 -8.0440 -1.7930 18 6 4.3365 -9.0572 -2.6296 19 8 3.1891 -9.5042 -3.1657 20 6 2.1599 -8.7916 -2.6790 21 6 1.9207 -3.7003 -0.3658 22 1 -0.4849 -0.8357 0.0856 23 1 -0.6626 -2.3720 -0.7823 24 1 0.2239 -1.4799 -2.0563 25 1 1.0381 -3.5164 -3.0719 26 1 -0.6095 -4.0047 -2.5519 27 1 2.3532 -6.6320 -0.1142 28 1 0.8543 -7.2518 -0.8473 29 1 4.7534 -7.4723 -1.2078 30 1 5.3231 -9.4455 -2.8353 31 1 1.1191 -8.9325 -2.9306 32 1 2.9412 -3.7876 -0.7387 33 1 1.8848 -3.9732 0.6890 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223783328.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:38 Heat of formation + Delta-G solvation = -25.087385 kcal Electronic energy + Delta-G solvation = -16411.005219 eV Core-core repulsion = 13631.600385 eV Total energy + Delta-G solvation = -2779.404834 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.47876 -40.07017 -37.85504 -34.79452 -33.94833 -31.19830 -30.74570 -29.02165 -27.24254 -26.09607 -22.54047 -22.17981 -21.97964 -21.36829 -19.68102 -18.57071 -17.98562 -16.87163 -16.67069 -16.21985 -15.75659 -15.63427 -15.38344 -15.11354 -14.68071 -13.99592 -13.73940 -13.68526 -13.10671 -12.96061 -12.65990 -12.51420 -12.44624 -12.22251 -11.88836 -11.64022 -11.61252 -10.79650 -10.66964 -10.50131 -9.52531 -9.09246 -8.37403 -5.37084 0.80453 1.48690 1.56660 1.64808 1.82810 2.24969 2.59689 2.84644 3.14802 3.52776 3.66981 3.80179 3.92194 3.94639 4.05289 4.15923 4.36999 4.42075 4.51947 4.58441 4.75207 4.82420 4.88992 4.89938 5.02068 5.08636 5.23531 5.25408 5.48746 5.59414 6.14190 6.22861 6.27325 6.85218 7.65493 8.21925 8.96081 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.052831 B = 0.004615 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.869625 B = 6066.279055 C = 6374.686611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.075 4.075 3 Si 1.121 2.879 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.289 1.289 7 C -0.353 4.353 8 H 0.059 0.941 9 N -0.627 5.627 10 C 0.147 3.853 11 C -0.114 4.114 12 C 0.094 3.906 13 H 0.089 0.911 14 O -0.383 6.383 15 C 0.126 3.874 16 C -0.210 4.210 17 C -0.226 4.226 18 C -0.038 4.038 19 O -0.185 6.185 20 C -0.015 4.015 21 C 0.113 3.887 22 H 0.258 0.742 23 H 0.017 0.983 24 H 0.026 0.974 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.149 0.851 30 H 0.239 0.761 31 H 0.232 0.768 32 H 0.023 0.977 33 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.111 -18.721 -5.014 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.271 4.271 3 Si 0.944 3.056 4 H -0.210 1.210 5 H -0.198 1.198 6 H -0.215 1.215 7 C -0.481 4.481 8 H 0.076 0.924 9 N -0.355 5.355 10 C 0.021 3.979 11 C -0.152 4.152 12 C 0.036 3.964 13 H 0.107 0.893 14 O -0.302 6.302 15 C 0.050 3.950 16 C -0.211 4.211 17 C -0.245 4.245 18 C -0.105 4.105 19 O -0.080 6.080 20 C -0.083 4.083 21 C -0.013 4.013 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.167 0.833 30 H 0.255 0.745 31 H 0.248 0.752 32 H 0.042 0.958 33 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 4.078 -17.250 -5.419 18.535 hybrid contribution 0.173 -1.204 0.854 1.486 sum 4.251 -18.454 -4.565 19.479 Atomic orbital electron populations 1.70871 1.07460 1.29689 1.50876 1.27187 0.96617 1.04290 0.99025 0.82783 0.73954 0.71726 0.77087 1.21032 1.19830 1.21536 1.20083 0.99286 0.89308 1.39394 0.92357 1.44750 1.31798 1.02060 1.56908 1.21542 0.89031 0.95785 0.91519 1.22837 1.01736 0.93443 0.97222 1.22938 0.92242 0.87133 0.94127 0.89315 1.87981 1.75006 1.23438 1.43817 1.20783 0.98830 0.82831 0.92571 1.20372 0.94918 1.00802 1.05053 1.22020 0.95657 1.01916 1.04895 1.24657 0.90409 0.97979 0.97412 1.84090 1.15598 1.51984 1.56349 1.24448 0.93689 0.93484 0.96711 1.21884 0.97079 0.85384 0.96936 0.93139 0.96484 0.95517 0.91189 0.87780 0.92841 0.90249 0.83325 0.74499 0.75160 0.95846 0.96213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.18 12.82 21.65 0.28 -58.90 16 2 C -0.08 -4.47 5.09 84.86 0.43 -4.04 16 3 Si 1.12 52.61 30.00 68.60 2.06 54.66 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 7 C -0.35 -21.05 10.05 84.03 0.84 -20.21 16 8 H 0.06 3.48 7.96 -2.91 -0.02 3.46 16 9 N -0.63 -33.96 3.33 -691.58 -2.30 -36.26 16 10 C 0.15 7.14 5.22 86.93 0.45 7.59 16 11 C -0.11 -4.24 6.82 32.06 0.22 -4.03 16 12 C 0.09 3.34 3.40 31.78 0.11 3.45 16 13 H 0.09 2.76 7.88 -2.39 -0.02 2.74 16 14 O -0.38 -12.68 10.05 -148.98 -1.50 -14.18 16 15 C 0.13 3.26 6.32 71.24 0.45 3.71 16 16 C -0.21 -5.12 5.79 -19.94 -0.12 -5.23 16 17 C -0.23 -5.17 10.87 22.19 0.24 -4.92 16 18 C -0.04 -0.68 12.09 66.97 0.81 0.13 16 19 O -0.18 -3.74 10.65 -2.48 -0.03 -3.77 16 20 C -0.02 -0.31 12.01 66.97 0.80 0.50 16 21 C 0.11 5.07 7.01 86.73 0.61 5.68 16 22 H 0.26 16.22 5.83 -92.71 -0.54 15.68 16 23 H 0.02 0.87 6.84 -2.39 -0.02 0.86 16 24 H 0.03 1.43 7.73 -2.39 -0.02 1.42 16 25 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.10 3.11 8.14 -2.38 -0.02 3.10 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.65 8.11 -2.39 -0.02 1.63 16 29 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 30 H 0.24 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.23 2.91 8.06 -2.91 -0.02 2.88 16 32 H 0.02 1.10 8.06 -2.39 -0.02 1.08 16 33 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -73.38 281.99 4.68 -68.70 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.32 Total: 7.12 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: 4.86 Total: -17.38 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -2.02 Total: -95.16 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -1.52 Total: -17.95 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 2.06 Total: 54.66 kcal Total: -73.38 4.68 -68.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223783328.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.614 kcal (2) G-P(sol) polarization free energy of solvation -73.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds