Wall clock time and date at job start Sun Mar 29 2020 22:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42903 * 114.16593 * 272.37549 * 12 11 10 14 14 C 1.42906 * 113.99676 * 243.84096 * 13 12 11 15 15 C 1.50709 * 109.46935 * 180.02562 * 14 13 12 16 16 C 1.41387 * 126.57732 * 90.00016 * 15 14 13 17 17 C 1.34511 * 106.83978 * 179.97438 * 16 15 14 18 18 O 1.34299 * 108.41896 * 0.02562 * 17 16 15 19 19 C 1.34310 * 109.48001 * 359.76715 * 18 17 16 20 20 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 25 25 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 26 26 H 1.08997 * 114.34366 * 139.68828 * 12 11 10 27 27 H 1.09000 * 109.47344 * 300.00425 * 14 13 12 28 28 H 1.08994 * 109.46979 * 60.00477 * 14 13 12 29 29 H 1.08007 * 126.57793 * 359.93294 * 16 15 14 30 30 H 1.07999 * 125.78645 * 179.97438 * 17 16 15 31 31 H 1.07999 * 125.78745 * 180.23318 * 19 18 17 32 32 H 1.09000 * 113.47556 * 253.46531 * 20 10 9 33 33 H 1.08997 * 113.47949 * 23.93922 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 3.6677 -6.0089 -0.3471 14 6 4.1872 -7.1179 -1.0835 15 6 5.4986 -7.5513 -0.4805 16 6 5.6792 -8.5089 0.5440 17 6 7.0020 -8.5872 0.7752 18 8 7.6284 -7.7325 -0.0497 19 6 6.7220 -7.1049 -0.8169 20 6 1.5184 -4.8986 0.2386 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 1.6756 -3.8466 -2.0765 25 1 3.4598 -3.7930 -1.7440 26 1 1.9088 -6.2223 -1.4965 27 1 3.4782 -7.9449 -1.0434 28 1 4.3437 -6.8236 -2.1213 29 1 4.9038 -9.0693 1.0452 30 1 7.4792 -9.2282 1.5018 31 1 6.9386 -6.3657 -1.5739 32 1 1.6915 -5.3047 1.2352 33 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223786198.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:36 Heat of formation + Delta-G solvation = 15.776075 kcal Electronic energy + Delta-G solvation = -16084.565217 eV Core-core repulsion = 13306.932356 eV Total energy + Delta-G solvation = -2777.632861 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.61428 -39.51308 -36.61251 -33.41257 -32.71166 -30.03941 -29.02418 -26.23477 -25.37002 -24.88459 -21.69473 -21.64723 -20.52066 -19.37957 -17.68809 -16.53240 -16.24389 -15.83568 -15.35642 -15.19137 -14.71649 -14.28980 -13.79356 -13.36102 -13.21781 -12.89051 -12.55135 -12.03010 -11.91532 -11.59233 -11.09279 -11.01187 -10.68946 -10.50186 -10.18560 -9.89118 -9.58526 -9.22079 -9.11694 -8.66554 -8.38915 -7.74582 -5.99816 -4.00441 1.66728 2.40459 3.04820 3.36907 3.39818 3.44238 3.97493 4.46544 4.67589 4.75309 4.91375 4.96143 5.14492 5.30869 5.35325 5.36688 5.40746 5.63047 5.90867 5.94659 6.01254 6.06099 6.20519 6.29507 6.36620 6.44401 6.73058 7.00952 7.20849 7.51859 7.71717 7.92326 8.17022 8.52623 9.07298 9.63396 11.11386 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036456 B = 0.004476 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.861200 B = 6253.693953 C = 6746.991828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.053 3.947 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.156 3.844 10 N -0.455 5.455 11 C -0.008 4.008 12 C 0.054 3.946 13 O -0.344 6.344 14 C 0.129 3.871 15 C -0.182 4.182 16 C -0.196 4.196 17 C -0.050 4.050 18 O -0.178 6.178 19 C -0.016 4.016 20 C -0.007 4.007 21 H 0.261 0.739 22 H 0.028 0.972 23 H 0.002 0.998 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.148 0.852 30 H 0.202 0.798 31 H 0.204 0.796 32 H 0.080 0.920 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.129 -17.687 -2.911 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.728 3.272 4 H -0.214 1.214 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.030 3.970 10 N -0.178 5.178 11 C -0.137 4.137 12 C -0.005 4.005 13 O -0.263 6.263 14 C 0.052 3.948 15 C -0.183 4.183 16 C -0.215 4.215 17 C -0.117 4.117 18 O -0.074 6.074 19 C -0.084 4.084 20 C -0.136 4.136 21 H 0.071 0.929 22 H 0.046 0.954 23 H 0.020 0.980 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.166 0.834 30 H 0.218 0.782 31 H 0.221 0.779 32 H 0.098 0.902 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.903 -17.170 -2.307 19.955 hybrid contribution -0.792 0.725 -0.618 1.238 sum 9.112 -16.446 -2.924 19.027 Atomic orbital electron populations 1.69950 1.06072 1.26853 1.51348 1.25009 0.94891 0.99367 0.95488 0.86528 0.79408 0.82584 0.78709 1.21359 1.20131 1.20273 1.21084 0.93607 0.89787 1.49630 0.91911 1.20297 0.90774 0.89445 0.96528 1.69038 1.33168 1.01338 1.14292 1.24220 1.02247 0.93121 0.94156 1.23324 0.85562 0.94666 0.96935 1.88084 1.36154 1.47591 1.54456 1.20642 0.90823 0.89203 0.94087 1.20182 0.94930 1.01507 1.01702 1.21742 0.96619 1.02406 1.00734 1.23974 0.92297 0.97300 0.98093 1.84074 1.37488 1.44602 1.41186 1.23977 0.86847 0.99334 0.98216 1.24031 0.96232 0.93660 0.99708 0.92914 0.95360 0.97983 0.91250 0.90349 0.91072 0.92621 0.92596 0.83432 0.78170 0.77896 0.90158 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.50 -14.86 9.39 -34.44 -0.32 -15.18 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.16 4.22 4.57 -4.98 -0.02 4.20 16 10 N -0.46 -10.59 6.32 -246.08 -1.55 -12.15 16 11 C -0.01 -0.15 7.55 -7.54 -0.06 -0.21 16 12 C 0.05 0.87 4.66 -26.20 -0.12 0.75 16 13 O -0.34 -5.79 10.38 -35.23 -0.37 -6.16 16 14 C 0.13 1.63 6.29 36.01 0.23 1.85 16 15 C -0.18 -2.29 5.79 -104.74 -0.61 -2.90 16 16 C -0.20 -2.21 10.87 -39.70 -0.43 -2.64 16 17 C -0.05 -0.49 12.09 29.41 0.36 -0.14 16 18 O -0.18 -2.08 10.65 5.70 0.06 -2.02 16 19 C -0.02 -0.18 12.01 29.41 0.35 0.17 16 20 C -0.01 -0.13 7.52 -7.53 -0.06 -0.18 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.03 0.81 8.08 -51.92 -0.42 0.40 16 23 H 0.00 0.07 7.30 -51.93 -0.38 -0.31 16 24 H 0.07 1.32 7.42 -51.93 -0.39 0.93 16 25 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 26 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.20 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.20 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.07 1.23 7.91 -51.93 -0.41 0.82 16 LS Contribution 289.14 15.07 4.36 4.36 Total: -1.00 -33.73 289.14 -7.08 -40.81 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -4.51 Total: -2.67 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -0.78 Total: -12.81 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.82 Total: -38.81 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.30 Total: -8.17 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.73 -7.08 -40.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223786198.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.584 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds