Wall clock time and date at job start Sun Mar 29 2020 22:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42903 * 114.16593 * 272.37549 * 12 11 10 14 14 C 1.42906 * 113.99676 * 243.84096 * 13 12 11 15 15 C 1.50709 * 109.46935 * 180.02562 * 14 13 12 16 16 C 1.41387 * 126.57732 * 90.00016 * 15 14 13 17 17 C 1.34511 * 106.83978 * 179.97438 * 16 15 14 18 18 O 1.34299 * 108.41896 * 0.02562 * 17 16 15 19 19 C 1.34310 * 109.48001 * 359.76715 * 18 17 16 20 20 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 25 25 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 26 26 H 1.08997 * 114.34366 * 139.68828 * 12 11 10 27 27 H 1.09000 * 109.47344 * 300.00425 * 14 13 12 28 28 H 1.08994 * 109.46979 * 60.00477 * 14 13 12 29 29 H 1.08007 * 126.57793 * 359.93294 * 16 15 14 30 30 H 1.07999 * 125.78645 * 179.97438 * 17 16 15 31 31 H 1.07999 * 125.78745 * 180.23318 * 19 18 17 32 32 H 1.09000 * 113.47556 * 253.46531 * 20 10 9 33 33 H 1.08997 * 113.47949 * 23.93922 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 3.6677 -6.0089 -0.3471 14 6 4.1872 -7.1179 -1.0835 15 6 5.4986 -7.5513 -0.4805 16 6 5.6792 -8.5089 0.5440 17 6 7.0020 -8.5872 0.7752 18 8 7.6284 -7.7325 -0.0497 19 6 6.7220 -7.1049 -0.8169 20 6 1.5184 -4.8986 0.2386 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 1.6756 -3.8466 -2.0765 25 1 3.4598 -3.7930 -1.7440 26 1 1.9088 -6.2223 -1.4965 27 1 3.4782 -7.9449 -1.0434 28 1 4.3437 -6.8236 -2.1213 29 1 4.9038 -9.0693 1.0452 30 1 7.4792 -9.2282 1.5018 31 1 6.9386 -6.3657 -1.5739 32 1 1.6915 -5.3047 1.2352 33 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223786198.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:36 Heat of formation + Delta-G solvation = -9.357643 kcal Electronic energy + Delta-G solvation = -16085.655097 eV Core-core repulsion = 13306.932356 eV Total energy + Delta-G solvation = -2778.722741 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.43930 -41.02856 -37.90786 -35.05474 -34.20147 -31.23068 -30.57273 -27.48987 -26.94056 -26.54055 -23.59973 -22.48246 -21.38711 -20.84724 -18.68632 -18.44933 -17.62502 -17.03361 -16.75594 -16.36317 -16.21029 -15.57659 -15.33403 -15.04219 -14.52105 -13.96333 -13.75103 -13.65857 -13.34584 -13.10170 -12.85027 -12.56841 -12.34119 -12.23645 -11.91360 -11.49690 -11.28250 -10.71980 -10.62787 -10.39840 -9.53948 -9.48711 -8.23929 -6.34306 0.83629 1.38305 1.42147 1.50468 1.53677 2.29103 2.38724 2.81387 3.07743 3.46086 3.51288 3.93680 4.00370 4.01563 4.16577 4.38441 4.50990 4.56571 4.59829 4.67839 4.70790 4.81699 4.89246 5.00025 5.04846 5.13007 5.28311 5.55571 5.57944 5.80570 6.09266 6.18506 6.35217 6.50800 6.79747 7.35229 8.86999 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036456 B = 0.004476 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.861200 B = 6253.693953 C = 6746.991828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.053 0.947 9 C 0.171 3.829 10 N -0.488 5.488 11 C -0.013 4.013 12 C 0.083 3.917 13 O -0.372 6.372 14 C 0.125 3.875 15 C -0.207 4.207 16 C -0.219 4.219 17 C -0.044 4.044 18 O -0.189 6.189 19 C -0.026 4.026 20 C -0.011 4.011 21 H 0.266 0.734 22 H -0.001 1.001 23 H -0.014 1.014 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.160 0.840 30 H 0.238 0.762 31 H 0.223 0.777 32 H 0.079 0.921 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.136 -18.457 -3.356 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.795 3.205 4 H -0.202 1.202 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.071 0.929 9 C 0.044 3.956 10 N -0.211 5.211 11 C -0.142 4.142 12 C 0.025 3.975 13 O -0.291 6.291 14 C 0.050 3.950 15 C -0.209 4.209 16 C -0.238 4.238 17 C -0.110 4.110 18 O -0.085 6.085 19 C -0.093 4.093 20 C -0.140 4.140 21 H 0.075 0.925 22 H 0.017 0.983 23 H 0.003 0.997 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.134 0.866 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.177 0.823 30 H 0.254 0.746 31 H 0.239 0.761 32 H 0.098 0.902 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.920 -17.967 -2.757 21.205 hybrid contribution -1.073 0.874 -0.452 1.456 sum 9.847 -17.093 -3.209 19.985 Atomic orbital electron populations 1.70061 1.07605 1.28109 1.51573 1.25925 0.95839 1.03187 0.94572 0.85420 0.78220 0.77807 0.79077 1.20238 1.19614 1.19181 1.21389 0.93386 0.91485 1.50488 0.92860 1.19967 0.90730 0.90652 0.94205 1.68954 1.32900 1.01980 1.17256 1.24285 1.01947 0.95564 0.92417 1.23075 0.85306 0.93769 0.95375 1.88050 1.36275 1.49144 1.55646 1.20873 0.91192 0.88512 0.94457 1.20436 0.95263 1.02447 1.02715 1.22040 0.97707 1.02907 1.01111 1.24716 0.92181 0.96529 0.97619 1.84084 1.37912 1.44973 1.41514 1.24413 0.86777 0.99573 0.98576 1.24118 0.97258 0.91705 1.00932 0.92498 0.98293 0.99652 0.90958 0.90858 0.86616 0.90728 0.90938 0.82283 0.74583 0.76106 0.90222 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.53 -31.95 9.39 25.60 0.24 -31.71 16 8 H 0.05 3.23 7.81 -2.91 -0.02 3.21 16 9 C 0.17 9.59 4.57 85.55 0.39 9.98 16 10 N -0.49 -22.99 6.32 -932.85 -5.89 -28.88 16 11 C -0.01 -0.48 7.55 83.58 0.63 0.15 16 12 C 0.08 2.55 4.66 30.94 0.14 2.69 16 13 O -0.37 -11.88 10.38 -148.98 -1.55 -13.43 16 14 C 0.13 2.88 6.29 71.24 0.45 3.33 16 15 C -0.21 -4.90 5.79 -19.94 -0.12 -5.02 16 16 C -0.22 -4.58 10.87 22.19 0.24 -4.34 16 17 C -0.04 -0.79 12.09 66.97 0.81 0.02 16 18 O -0.19 -4.13 10.65 -2.51 -0.03 -4.16 16 19 C -0.03 -0.56 12.01 66.96 0.80 0.25 16 20 C -0.01 -0.40 7.52 83.58 0.63 0.23 16 21 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 22 H 0.00 -0.06 8.08 -2.38 -0.02 -0.08 16 23 H -0.01 -0.82 7.30 -2.39 -0.02 -0.84 16 24 H 0.07 2.72 7.42 -2.39 -0.02 2.70 16 25 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 26 H 0.12 2.57 7.88 -2.39 -0.02 2.55 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 30 H 0.24 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.22 3.63 8.06 -2.91 -0.02 3.60 16 32 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.08 2.78 7.91 -2.39 -0.02 2.76 16 Total: -1.00 -73.34 289.14 0.62 -72.72 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.09 Total: 6.76 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 4.69 Total: -23.80 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -5.61 Total: -85.93 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.57 Total: -17.59 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -73.34 0.62 -72.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223786198.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.366 kcal (2) G-P(sol) polarization free energy of solvation -73.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds