Wall clock time and date at job start Sun Mar 29 2020 22:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47303 * 2 1 4 4 O 1.42901 * 109.46955 * 120.00045 * 2 1 3 5 5 C 1.35912 * 116.99888 * 85.30906 * 4 2 1 6 6 C 1.38752 * 120.47232 * 174.65994 * 5 4 2 7 7 N 1.31814 * 120.67969 * 179.97438 * 6 5 4 8 8 C 1.31876 * 121.78114 * 359.70173 * 7 6 5 9 9 C 1.38212 * 120.88806 * 0.58495 * 8 7 6 10 10 C 1.50696 * 120.38579 * 179.70211 * 9 8 7 11 11 O 1.42899 * 109.47424 * 269.72379 * 10 9 8 12 12 C 1.34926 * 117.00267 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99843 * 359.97438 * 12 11 10 14 14 C 1.38634 * 120.00003 * 180.02562 * 12 11 10 15 15 N 1.31585 * 119.99946 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00064 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47520 * 89.99250 * 16 14 12 18 18 H 1.48501 * 109.47448 * 209.99719 * 16 14 12 19 19 H 1.48504 * 109.47037 * 329.99596 * 16 14 12 20 20 C 1.38579 * 119.21963 * 359.42823 * 9 8 7 21 21 H 1.08999 * 109.47321 * 59.99817 * 1 2 3 22 22 H 1.09000 * 109.47429 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46924 * 300.00233 * 1 2 3 24 24 H 1.08998 * 109.46924 * 239.99767 * 2 1 3 25 25 H 1.08995 * 109.47053 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46683 * 300.00092 * 3 2 1 27 27 H 1.08998 * 109.47321 * 60.00010 * 3 2 1 28 28 H 1.07994 * 119.65833 * 359.94787 * 6 5 4 29 29 H 1.07998 * 119.55439 * 180.31138 * 8 7 6 30 30 H 1.08998 * 109.47291 * 29.72605 * 10 9 8 31 31 H 1.09007 * 109.47076 * 149.72317 * 10 9 8 32 32 H 0.96994 * 119.99781 * 179.97438 * 15 14 12 33 33 H 1.08003 * 120.80544 * 180.25004 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1186 -2.0263 1.0957 6 6 2.6766 -2.7421 2.1451 7 7 2.7870 -4.0541 2.0807 8 6 2.3715 -4.7353 1.0308 9 6 1.8104 -4.0917 -0.0560 10 6 1.3454 -4.8808 -1.2527 11 8 2.4171 -5.0002 -2.1903 12 6 2.1642 -5.6831 -3.3261 13 1 1.1864 -6.1103 -3.4929 14 6 3.1597 -5.8373 -4.2785 15 7 4.3512 -5.3173 -4.0750 16 14 2.8097 -6.7834 -5.8507 17 1 2.3056 -5.8490 -6.8890 18 1 4.0591 -7.4279 -6.3292 19 1 1.7860 -7.8256 -5.5838 20 6 1.6752 -2.7128 -0.0298 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.0244 -2.2190 3.0236 29 1 2.4750 -5.8103 1.0182 30 1 1.0301 -5.8740 -0.9328 31 1 0.5067 -4.3673 -1.7229 32 1 5.0478 -5.4255 -4.7412 33 1 1.2367 -2.1841 -0.8633 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224381153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:19 Heat of formation + Delta-G solvation = -43.457781 kcal Electronic energy + Delta-G solvation = -16412.181427 eV Core-core repulsion = 13631.979993 eV Total energy + Delta-G solvation = -2780.201434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47461 -38.36651 -36.30272 -33.35566 -32.64794 -31.40763 -29.97015 -27.42806 -26.17389 -24.17431 -23.72692 -21.56586 -20.97216 -17.88006 -17.55921 -16.63165 -16.44683 -15.54620 -15.23948 -14.40437 -14.20998 -13.94072 -13.51666 -13.33747 -13.23458 -12.83120 -12.52940 -12.35595 -12.07301 -11.90910 -11.59359 -11.17634 -11.01885 -10.91236 -10.77648 -10.28580 -9.71369 -9.57698 -9.25131 -8.99626 -8.09761 -8.04623 -6.00477 -3.66367 1.44743 1.57925 3.18086 3.27567 3.30396 3.34647 4.05079 4.31645 4.66951 4.77065 4.81841 4.95542 5.02945 5.13685 5.29072 5.39113 5.40341 5.43267 5.57884 5.61339 5.68147 5.92033 5.95890 6.03050 6.12085 6.26793 6.27899 6.43211 6.73612 6.76649 7.41078 7.44232 8.27251 8.36371 9.41777 10.06366 11.19931 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.005958 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.449903 B = 4698.738535 C = 5307.660193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.072 3.928 3 C -0.146 4.146 4 O -0.308 6.308 5 C 0.075 3.925 6 C 0.062 3.938 7 N -0.452 5.452 8 C 0.076 3.924 9 C -0.072 4.072 10 C 0.109 3.891 11 O -0.287 6.287 12 C -0.367 4.367 13 H 0.065 0.935 14 C 0.025 3.975 15 N -0.886 5.886 16 Si 0.927 3.073 17 H -0.280 1.280 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.148 4.148 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.040 0.960 31 H 0.034 0.966 32 H 0.259 0.741 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.212 9.844 8.133 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.015 3.985 3 C -0.203 4.203 4 O -0.221 6.221 5 C 0.028 3.972 6 C -0.097 4.097 7 N -0.161 5.161 8 C -0.081 4.081 9 C -0.074 4.074 10 C 0.031 3.969 11 O -0.202 6.202 12 C -0.446 4.446 13 H 0.083 0.917 14 C -0.174 4.174 15 N -0.529 5.529 16 Si 0.754 3.246 17 H -0.207 1.207 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.175 4.175 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.175 0.825 29 H 0.175 0.825 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.459 9.633 8.951 14.650 hybrid contribution -0.830 -0.143 -1.869 2.050 sum -7.288 9.490 7.081 13.904 Atomic orbital electron populations 1.22371 0.95097 1.03178 1.02975 1.22486 0.94334 0.93796 0.87839 1.21833 1.02266 0.93407 1.02830 1.86083 1.81383 1.15915 1.38700 1.20102 0.97792 0.83487 0.95846 1.22072 1.00353 0.89491 0.97786 1.67703 1.15014 1.07175 1.26158 1.22575 0.96001 1.00609 0.88956 1.20780 0.96621 0.93518 0.96469 1.20936 0.91501 0.96306 0.88175 1.85739 1.31679 1.74533 1.28269 1.20823 0.97849 1.31344 0.94596 0.91737 1.24980 0.95071 0.98816 0.98486 1.70034 1.02483 1.45486 1.34853 0.85940 0.77610 0.79260 0.81777 1.20682 1.20808 1.19933 1.21661 1.03101 0.94803 0.97904 0.90920 0.91819 0.91557 0.90404 0.91544 0.90522 0.91618 0.82548 0.82461 0.94231 0.94785 0.93096 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.20 37.16 0.34 -1.51 16 2 C 0.07 0.87 2.85 -26.73 -0.08 0.79 16 3 C -0.15 -1.39 9.56 37.16 0.36 -1.04 16 4 O -0.31 -4.46 9.81 -19.46 -0.19 -4.65 16 5 C 0.08 1.23 6.62 -39.07 -0.26 0.97 16 6 C 0.06 1.00 11.14 -17.37 -0.19 0.81 16 7 N -0.45 -8.16 10.36 -13.13 -0.14 -8.30 16 8 C 0.08 1.41 10.85 -17.54 -0.19 1.22 16 9 C -0.07 -1.41 5.52 -104.51 -0.58 -1.99 16 10 C 0.11 2.37 6.16 36.00 0.22 2.60 16 11 O -0.29 -8.18 9.76 -16.50 -0.16 -8.34 16 12 C -0.37 -10.67 9.89 30.88 0.31 -10.36 16 13 H 0.06 1.74 7.77 -52.49 -0.41 1.33 16 14 C 0.03 0.74 5.49 -17.51 -0.10 0.64 16 15 N -0.89 -27.80 13.68 55.48 0.76 -27.04 16 16 Si 0.93 21.81 29.55 -169.99 -5.02 16.78 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 C -0.15 -2.63 8.04 -39.14 -0.31 -2.94 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.72 6.98 -51.93 -0.36 0.36 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.08 1.03 6.32 -51.93 -0.33 0.71 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.16 2.72 8.06 -52.49 -0.42 2.29 16 30 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 31 H 0.03 0.70 8.10 -51.92 -0.42 0.28 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.14 2.29 5.61 -52.48 -0.29 1.99 16 LS Contribution 287.82 15.07 4.34 4.34 Total: -1.00 -33.54 287.82 -5.23 -38.77 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.33 Total: -0.75 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -0.48 Total: -10.81 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.62 Total: -35.34 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.35 Total: -13.00 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.54 -5.23 -38.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.690 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds