Wall clock time and date at job start Sun Mar 29 2020 22:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47303 * 2 1 4 4 O 1.42901 * 109.46955 * 120.00045 * 2 1 3 5 5 C 1.35912 * 116.99888 * 85.30906 * 4 2 1 6 6 C 1.38752 * 120.47232 * 174.65994 * 5 4 2 7 7 N 1.31814 * 120.67969 * 179.97438 * 6 5 4 8 8 C 1.31876 * 121.78114 * 359.70173 * 7 6 5 9 9 C 1.38212 * 120.88806 * 0.58495 * 8 7 6 10 10 C 1.50696 * 120.38579 * 179.70211 * 9 8 7 11 11 O 1.42899 * 109.47424 * 269.72379 * 10 9 8 12 12 C 1.34926 * 117.00267 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99843 * 359.97438 * 12 11 10 14 14 C 1.38634 * 120.00003 * 180.02562 * 12 11 10 15 15 N 1.31585 * 119.99946 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00064 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47520 * 89.99250 * 16 14 12 18 18 H 1.48501 * 109.47448 * 209.99719 * 16 14 12 19 19 H 1.48504 * 109.47037 * 329.99596 * 16 14 12 20 20 C 1.38579 * 119.21963 * 359.42823 * 9 8 7 21 21 H 1.08999 * 109.47321 * 59.99817 * 1 2 3 22 22 H 1.09000 * 109.47429 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46924 * 300.00233 * 1 2 3 24 24 H 1.08998 * 109.46924 * 239.99767 * 2 1 3 25 25 H 1.08995 * 109.47053 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46683 * 300.00092 * 3 2 1 27 27 H 1.08998 * 109.47321 * 60.00010 * 3 2 1 28 28 H 1.07994 * 119.65833 * 359.94787 * 6 5 4 29 29 H 1.07998 * 119.55439 * 180.31138 * 8 7 6 30 30 H 1.08998 * 109.47291 * 29.72605 * 10 9 8 31 31 H 1.09007 * 109.47076 * 149.72317 * 10 9 8 32 32 H 0.96994 * 119.99781 * 179.97438 * 15 14 12 33 33 H 1.08003 * 120.80544 * 180.25004 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1186 -2.0263 1.0957 6 6 2.6766 -2.7421 2.1451 7 7 2.7870 -4.0541 2.0807 8 6 2.3715 -4.7353 1.0308 9 6 1.8104 -4.0917 -0.0560 10 6 1.3454 -4.8808 -1.2527 11 8 2.4171 -5.0002 -2.1903 12 6 2.1642 -5.6831 -3.3261 13 1 1.1864 -6.1103 -3.4929 14 6 3.1597 -5.8373 -4.2785 15 7 4.3512 -5.3173 -4.0750 16 14 2.8097 -6.7834 -5.8507 17 1 2.3056 -5.8490 -6.8890 18 1 4.0591 -7.4279 -6.3292 19 1 1.7860 -7.8256 -5.5838 20 6 1.6752 -2.7128 -0.0298 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.0244 -2.2190 3.0236 29 1 2.4750 -5.8103 1.0182 30 1 1.0301 -5.8740 -0.9328 31 1 0.5067 -4.3673 -1.7229 32 1 5.0478 -5.4255 -4.7412 33 1 1.2367 -2.1841 -0.8633 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224381153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:19 Heat of formation + Delta-G solvation = -65.994530 kcal Electronic energy + Delta-G solvation = -16413.158694 eV Core-core repulsion = 13631.979993 eV Total energy + Delta-G solvation = -2781.178701 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.77922 -39.61938 -38.26622 -34.54559 -34.20814 -33.32748 -31.31484 -28.27285 -27.86910 -26.19787 -25.04509 -23.02166 -22.04432 -19.77437 -19.05271 -17.95828 -17.77316 -17.40651 -16.53741 -15.91088 -15.67079 -15.39960 -15.17732 -14.94327 -14.49089 -13.94610 -13.84513 -13.45715 -13.36594 -13.12484 -12.94076 -12.86683 -12.69762 -12.09788 -11.99205 -11.77249 -11.60130 -11.51573 -10.70727 -10.55672 -10.20441 -9.42345 -8.19985 -5.91646 0.02545 0.19349 1.40514 1.46838 1.56465 2.05337 2.31327 2.69883 3.13249 3.40002 3.58777 3.71546 3.80329 3.92322 3.96547 4.01860 4.13525 4.31251 4.54686 4.60382 4.61783 4.67984 4.76427 4.82191 4.86390 4.94971 5.17454 5.21188 5.22178 5.26945 5.42507 6.17478 6.21346 6.88396 7.22241 7.98324 9.04440 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.005958 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.449903 B = 4698.738535 C = 5307.660193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.061 3.939 3 C -0.142 4.142 4 O -0.307 6.307 5 C 0.081 3.919 6 C 0.065 3.935 7 N -0.462 5.462 8 C 0.064 3.936 9 C -0.095 4.095 10 C 0.108 3.892 11 O -0.329 6.329 12 C -0.381 4.381 13 H 0.079 0.921 14 C -0.041 4.041 15 N -0.940 5.940 16 Si 1.008 2.992 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.256 1.256 20 C -0.153 4.153 21 H 0.092 0.908 22 H 0.049 0.951 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.189 0.811 29 H 0.163 0.837 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.261 0.739 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 10.595 7.993 15.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.005 3.995 3 C -0.199 4.199 4 O -0.220 6.220 5 C 0.034 3.966 6 C -0.094 4.094 7 N -0.170 5.170 8 C -0.092 4.092 9 C -0.097 4.097 10 C 0.031 3.969 11 O -0.246 6.246 12 C -0.460 4.460 13 H 0.097 0.903 14 C -0.234 4.234 15 N -0.585 5.585 16 Si 0.830 3.170 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.180 1.180 20 C -0.179 4.179 21 H 0.110 0.890 22 H 0.068 0.932 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.096 0.904 28 H 0.206 0.794 29 H 0.180 0.820 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.535 10.389 8.829 15.577 hybrid contribution -0.549 -0.238 -1.704 1.806 sum -8.084 10.151 7.125 14.804 Atomic orbital electron populations 1.22352 0.93599 1.02740 1.04508 1.22799 0.95647 0.94739 0.86281 1.21861 1.01899 0.91691 1.04454 1.86098 1.81250 1.14685 1.39932 1.20118 0.96929 0.84419 0.95185 1.22625 0.99098 0.89098 0.98611 1.67750 1.15309 1.08098 1.25861 1.22676 0.96264 1.01124 0.89139 1.20690 0.98669 0.94284 0.96095 1.21096 0.90464 0.97503 0.87837 1.85662 1.35050 1.74776 1.29101 1.21387 0.98566 1.31037 0.94996 0.90330 1.26278 0.94656 0.99892 1.02566 1.70217 1.03922 1.47698 1.36626 0.84720 0.77847 0.77992 0.76433 1.19453 1.20569 1.18018 1.21781 1.03122 0.94274 0.98761 0.88971 0.93223 0.90459 0.92099 0.92170 0.88458 0.90428 0.79417 0.81958 0.93125 0.93709 0.93038 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 9.20 71.98 0.66 -2.64 16 2 C 0.06 1.39 2.85 30.59 0.09 1.48 16 3 C -0.14 -2.40 9.56 71.98 0.69 -1.71 16 4 O -0.31 -8.43 9.81 -92.56 -0.91 -9.34 16 5 C 0.08 2.59 6.62 22.60 0.15 2.74 16 6 C 0.06 2.02 11.14 84.82 0.95 2.97 16 7 N -0.46 -16.40 10.36 -195.44 -2.02 -18.42 16 8 C 0.06 2.42 10.85 84.68 0.92 3.34 16 9 C -0.10 -3.79 5.52 -19.79 -0.11 -3.90 16 10 C 0.11 4.80 6.16 71.23 0.44 5.24 16 11 O -0.33 -19.26 9.76 -81.95 -0.80 -20.06 16 12 C -0.38 -22.34 9.89 67.91 0.67 -21.67 16 13 H 0.08 4.21 7.77 -2.91 -0.02 4.18 16 14 C -0.04 -2.39 5.49 84.82 0.47 -1.93 16 15 N -0.94 -60.22 13.68 21.61 0.30 -59.92 16 16 Si 1.01 44.57 29.55 68.60 2.03 46.59 16 17 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 20 C -0.15 -5.43 8.04 22.56 0.18 -5.25 16 21 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.05 1.08 6.98 -2.39 -0.02 1.06 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 1.60 6.32 -2.39 -0.02 1.58 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.19 4.56 8.06 -2.91 -0.02 4.54 16 29 H 0.16 5.74 8.06 -2.91 -0.02 5.72 16 30 H 0.05 2.09 8.09 -2.39 -0.02 2.07 16 31 H 0.04 1.85 8.10 -2.38 -0.02 1.83 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.15 4.82 5.61 -2.91 -0.02 4.81 16 Total: -1.00 -72.47 287.82 4.79 -67.68 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.10 Total: 14.81 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 5.10 Total: -21.34 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -1.73 Total: -78.34 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -1.71 Total: -29.40 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -72.47 4.79 -67.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.685 kcal (2) G-P(sol) polarization free energy of solvation -72.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds