Wall clock time and date at job start Sun Mar 29 2020 22:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 O 1.42905 * 109.46802 * 120.00062 * 2 1 3 5 5 C 1.35677 * 116.99668 * 150.00060 * 4 2 1 6 6 C 1.38919 * 119.68049 * 179.97438 * 5 4 2 7 7 C 1.38383 * 119.11063 * 179.97438 * 6 5 4 8 8 C 1.50701 * 120.75454 * 179.97438 * 7 6 5 9 9 O 1.42906 * 109.46803 * 90.00396 * 8 7 6 10 10 C 1.34930 * 116.99562 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00108 * 0.02562 * 10 9 8 12 12 C 1.38636 * 119.99656 * 179.97438 * 10 9 8 13 13 N 1.31581 * 120.00342 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99855 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46989 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46947 * 120.00052 * 14 12 10 17 17 H 1.48494 * 109.47508 * 240.00322 * 14 12 10 18 18 C 1.38824 * 118.48242 * 0.02562 * 7 6 5 19 19 C 1.38041 * 119.29224 * 359.97438 * 18 7 6 20 20 N 1.31968 * 120.83299 * 359.74540 * 19 18 7 21 21 H 1.09001 * 109.47101 * 300.00440 * 1 2 3 22 22 H 1.09002 * 109.46859 * 60.00069 * 1 2 3 23 23 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47101 * 239.99560 * 2 1 3 25 25 H 1.08997 * 109.46785 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47171 * 299.99740 * 3 2 1 27 27 H 1.09004 * 109.47223 * 60.00243 * 3 2 1 28 28 H 1.08000 * 120.44774 * 359.97438 * 6 5 4 29 29 H 1.09004 * 109.46826 * 209.99472 * 8 7 6 30 30 H 1.08995 * 109.47411 * 329.99930 * 8 7 6 31 31 H 0.96994 * 120.00224 * 179.97438 * 13 12 10 32 32 H 1.08002 * 120.35185 * 179.97438 * 18 7 6 33 33 H 1.08001 * 119.58442 * 179.97438 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1987 -1.3130 1.0653 6 6 3.7146 -1.9855 2.1660 7 6 4.9314 -2.6341 2.0491 8 6 5.5256 -3.3744 3.2196 9 8 5.0778 -4.7313 3.2019 10 6 5.5223 -5.5359 4.1897 11 1 6.1857 -5.1452 4.9470 12 6 5.1264 -6.8638 4.2329 13 7 4.3177 -7.3397 3.3105 14 14 5.7423 -7.9779 5.6000 15 1 6.6331 -7.2065 6.5037 16 1 4.5860 -8.4994 6.3723 17 1 6.4968 -9.1133 5.0113 18 6 5.5927 -2.5862 0.8294 19 6 5.0209 -1.8989 -0.2223 20 7 3.8561 -1.2947 -0.0820 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1300 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1732 -2.0020 3.1004 29 1 6.6132 -3.3498 3.1507 30 1 5.2095 -2.8994 4.1483 31 1 4.0410 -8.2689 3.3406 32 1 6.5444 -3.0814 0.7048 33 1 5.5314 -1.8583 -1.1732 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224386371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:17 Heat of formation + Delta-G solvation = -42.795427 kcal Electronic energy + Delta-G solvation = -16199.739809 eV Core-core repulsion = 13419.567097 eV Total energy + Delta-G solvation = -2780.172712 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.37113 -38.14445 -36.26548 -33.22061 -32.82275 -31.40609 -29.79961 -27.32334 -26.49548 -24.19095 -23.05231 -22.45681 -20.42582 -17.90340 -17.52122 -16.55809 -15.68596 -15.48339 -15.15764 -14.59359 -14.36619 -13.97655 -13.63773 -13.26844 -13.06750 -12.92486 -12.37714 -12.31322 -11.94145 -11.67938 -11.54423 -11.11304 -10.97780 -10.87441 -10.69884 -10.24730 -9.66947 -9.62182 -9.30521 -8.99799 -8.16398 -8.03147 -5.98865 -3.64748 1.51716 1.61843 3.20060 3.29062 3.32243 3.36840 4.06683 4.33010 4.54176 4.84914 4.95894 5.13473 5.20624 5.27472 5.36035 5.45839 5.48843 5.58523 5.66250 5.77534 5.82912 5.97126 6.04978 6.12967 6.16396 6.26175 6.30176 6.45980 6.78137 6.91355 7.43386 7.54876 8.13953 8.37835 9.43381 10.07404 11.21651 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040917 B = 0.004826 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.146822 B = 5800.666776 C = 6111.565770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 C -0.166 4.166 4 O -0.304 6.304 5 C 0.315 3.685 6 C -0.171 4.171 7 C 0.013 3.987 8 C 0.105 3.895 9 O -0.286 6.286 10 C -0.367 4.367 11 H 0.066 0.934 12 C 0.025 3.975 13 N -0.886 5.886 14 Si 0.927 3.073 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.190 4.190 19 C 0.128 3.872 20 N -0.547 5.547 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.139 0.861 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.259 0.741 32 H 0.136 0.864 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.261 14.500 -6.371 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.024 3.976 3 C -0.224 4.224 4 O -0.212 6.212 5 C 0.136 3.864 6 C -0.191 4.191 7 C 0.005 3.995 8 C 0.028 3.972 9 O -0.201 6.201 10 C -0.446 4.446 11 H 0.084 0.916 12 C -0.173 4.173 13 N -0.528 5.528 14 Si 0.754 3.246 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.210 4.210 19 C -0.027 4.027 20 N -0.271 5.271 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.157 0.843 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.154 0.846 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.022 14.757 -7.033 16.625 hybrid contribution 0.836 -0.919 1.307 1.803 sum -2.186 13.839 -5.726 15.136 Atomic orbital electron populations 1.21902 0.93215 1.03058 1.02606 1.22264 0.94225 0.92551 0.88522 1.22202 1.02121 0.95889 1.02185 1.86292 1.32069 1.64664 1.38147 1.19677 0.86029 0.90773 0.89890 1.20975 0.97119 1.01771 0.99285 1.20146 0.92230 0.91627 0.95474 1.21008 0.96345 0.87326 0.92553 1.85741 1.70020 1.14564 1.49791 1.20879 1.27861 0.91360 1.04489 0.91629 1.24982 0.97738 0.96326 0.98298 1.70044 1.34498 1.14570 1.33715 0.85864 0.78232 0.80198 0.80268 1.19829 1.20803 1.20802 1.21913 1.03003 1.02654 0.93458 1.22249 0.89789 0.92148 0.98472 1.67141 1.10736 1.24773 1.24492 0.91774 0.90789 0.91733 0.89367 0.92039 0.91427 0.92184 0.84283 0.94196 0.94333 0.93142 0.84574 0.82691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.56 37.16 0.36 -1.19 16 2 C 0.08 1.03 3.11 -26.73 -0.08 0.95 16 3 C -0.17 -1.80 9.53 37.16 0.35 -1.45 16 4 O -0.30 -4.95 9.76 -18.73 -0.18 -5.13 16 5 C 0.31 5.59 7.45 -17.13 -0.13 5.46 16 6 C -0.17 -3.24 9.75 -39.28 -0.38 -3.62 16 7 C 0.01 0.25 5.54 -104.35 -0.58 -0.32 16 8 C 0.11 2.32 6.19 36.01 0.22 2.54 16 9 O -0.29 -8.24 9.76 -16.51 -0.16 -8.41 16 10 C -0.37 -10.76 9.89 30.88 0.31 -10.45 16 11 H 0.07 1.79 7.77 -52.49 -0.41 1.38 16 12 C 0.03 0.74 5.49 -17.51 -0.10 0.65 16 13 N -0.89 -27.97 13.67 55.48 0.76 -27.21 16 14 Si 0.93 21.95 29.55 -169.99 -5.02 16.93 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.19 -3.26 9.81 -39.44 -0.39 -3.64 16 19 C 0.13 1.97 11.18 -17.57 -0.20 1.78 16 20 N -0.55 -9.14 8.64 -13.33 -0.12 -9.26 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 1.20 6.98 -51.93 -0.36 0.84 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.14 2.54 8.06 -52.49 -0.42 2.12 16 29 H 0.04 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.04 0.80 8.10 -51.93 -0.42 0.38 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 33 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 292.51 15.07 4.41 4.41 Total: -1.00 -33.85 292.51 -5.48 -39.33 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.55 Total: -1.37 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -0.61 Total: -9.30 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.64 Total: -36.46 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.34 Total: -13.53 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.85 -5.48 -39.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224386371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.462 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds